ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07a09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475522.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1020 Score = 129 bits (65), Expect = 6e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 181 tgctgggggtggtgaacttcataacgttcctggcgtcgatcccggtgctggggggcggaa 240 |||||||| | || |||||| | ||||||||| ||||||||| | |||||||| |||| Sbjct: 23 tgctggggatcgtcaacttcgtgacgttcctgatctcgatcccgatcctggggggaggaa 82 Query: 241 tctggctggcgtcgcgggcgaacaccacggactgcatccggttcctgcagtggccaatca 300 |||||||||||||| |||| ||| |||| ||||||||||| |||||||||||||| |||| Sbjct: 83 tctggctggcgtcgagggccaactccaccgactgcatccgcttcctgcagtggccgatca 142 Query: 301 tcatcatcgggctcgccgtca 321 || ||||||||||||||||| Sbjct: 143 tcgccatcgggctcgccgtca 163
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 129 bits (65), Expect = 6e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 181 tgctgggggtggtgaacttcataacgttcctggcgtcgatcccggtgctggggggcggaa 240 |||||||| | || |||||| | ||||||||| ||||||||| | |||||||| |||| Sbjct: 1194423 tgctggggatcgtcaacttcgtgacgttcctgatctcgatcccgatcctggggggaggaa 1194482 Query: 241 tctggctggcgtcgcgggcgaacaccacggactgcatccggttcctgcagtggccaatca 300 |||||||||||||| |||| ||| |||| ||||||||||| |||||||||||||| |||| Sbjct: 1194483 tctggctggcgtcgagggccaactccaccgactgcatccgcttcctgcagtggccgatca 1194542 Query: 301 tcatcatcgggctcgccgtca 321 || ||||||||||||||||| Sbjct: 1194543 tcgccatcgggctcgccgtca 1194563
>dbj|AK101005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147M12, full insert sequence Length = 2183 Score = 129 bits (65), Expect = 6e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 181 tgctgggggtggtgaacttcataacgttcctggcgtcgatcccggtgctggggggcggaa 240 |||||||| | || |||||| | ||||||||| ||||||||| | |||||||| |||| Sbjct: 172 tgctggggatcgtcaacttcgtgacgttcctgatctcgatcccgatcctggggggaggaa 231 Query: 241 tctggctggcgtcgcgggcgaacaccacggactgcatccggttcctgcagtggccaatca 300 |||||||||||||| |||| ||| |||| ||||||||||| |||||||||||||| |||| Sbjct: 232 tctggctggcgtcgagggccaactccaccgactgcatccgcttcctgcagtggccgatca 291 Query: 301 tcatcatcgggctcgccgtca 321 || ||||||||||||||||| Sbjct: 292 tcgccatcgggctcgccgtca 312
>dbj|AK068516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151M14, full insert sequence Length = 1458 Score = 129 bits (65), Expect = 6e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 181 tgctgggggtggtgaacttcataacgttcctggcgtcgatcccggtgctggggggcggaa 240 |||||||| | || |||||| | ||||||||| ||||||||| | |||||||| |||| Sbjct: 222 tgctggggatcgtcaacttcgtgacgttcctgatctcgatcccgatcctggggggaggaa 281 Query: 241 tctggctggcgtcgcgggcgaacaccacggactgcatccggttcctgcagtggccaatca 300 |||||||||||||| |||| ||| |||| ||||||||||| |||||||||||||| |||| Sbjct: 282 tctggctggcgtcgagggccaactccaccgactgcatccgcttcctgcagtggccgatca 341 Query: 301 tcatcatcgggctcgccgtca 321 || ||||||||||||||||| Sbjct: 342 tcgccatcgggctcgccgtca 362
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 129 bits (65), Expect = 6e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 181 tgctgggggtggtgaacttcataacgttcctggcgtcgatcccggtgctggggggcggaa 240 |||||||| | || |||||| | ||||||||| ||||||||| | |||||||| |||| Sbjct: 44709 tgctggggatcgtcaacttcgtgacgttcctgatctcgatcccgatcctggggggaggaa 44768 Query: 241 tctggctggcgtcgcgggcgaacaccacggactgcatccggttcctgcagtggccaatca 300 |||||||||||||| |||| ||| |||| ||||||||||| |||||||||||||| |||| Sbjct: 44769 tctggctggcgtcgagggccaactccaccgactgcatccgcttcctgcagtggccgatca 44828 Query: 301 tcatcatcgggctcgccgtca 321 || ||||||||||||||||| Sbjct: 44829 tcgccatcgggctcgccgtca 44849
>gb|AY107497.1| Zea mays PCO100488 mRNA sequence Length = 836 Score = 125 bits (63), Expect = 9e-26 Identities = 108/123 (87%) Strand = Plus / Plus Query: 180 atgctgggggtggtgaacttcataacgttcctggcgtcgatcccggtgctggggggcgga 239 ||||||||||| || ||||||||||| |||||| ||||||||| | ||||| ||||| Sbjct: 183 atgctgggggttgtcaacttcataaccttcctgatctcgatcccgatcctgggcggcggc 242 Query: 240 atctggctggcgtcgcgggcgaacaccacggactgcatccggttcctgcagtggccaatc 299 |||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||| ||| Sbjct: 243 atctggctggcgtcgcgggccaactccaccgactgcatccgcttcctgcagtggcccatc 302 Query: 300 atc 302 ||| Sbjct: 303 atc 305
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 tggtgaacttcataacgttcct 211 |||||||||||||||||||||| Sbjct: 1951551 tggtgaacttcataacgttcct 1951530
>ref|XM_716033.1| Candida albicans SC5314 hypothetical protein (CaO19_8501), mRNA Length = 1329 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 tggtgaacttcataacgttcct 211 |||||||||||||||||||||| Sbjct: 863 tggtgaacttcataacgttcct 842
>ref|XM_715912.1| Candida albicans SC5314 hypothetical protein (CaO19_882), mRNA Length = 1329 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 tggtgaacttcataacgttcct 211 |||||||||||||||||||||| Sbjct: 863 tggtgaacttcataacgttcct 842
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 tggtgaacttcataacgttcct 211 |||||||||||||||||||||| Sbjct: 1912206 tggtgaacttcataacgttcct 1912185
>gb|AF399713.1| Candida albicans heat shock protein 78 (HSP78) gene, complete cds Length = 2439 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 tggtgaacttcataacgttcct 211 |||||||||||||||||||||| Sbjct: 863 tggtgaacttcataacgttcct 842
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 atcatcatcatcgggctcgccgtca 321 |||||| |||||||||||||||||| Sbjct: 702815 atcatcgtcatcgggctcgccgtca 702839
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 207 ttcctggcgtcgatcccggtgctgg 231 |||||||||||||||||| |||||| Sbjct: 8968948 ttcctggcgtcgatcccgatgctgg 8968924
>gb|AY224518.1| Oryza sativa (japonica cultivar-group) isolate 20462 senescence-associated protein-like protein mRNA, complete cds Length = 831 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 225 gtgctggggggcggaatctggctggcgtcgcg 256 |||||||| ||||| |||||||||||| |||| Sbjct: 70 gtgctgggcggcggcatctggctggcgacgcg 101
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tggtgaacttcataacgttc 209 |||||||||||||||||||| Sbjct: 1929552 tggtgaacttcataacgttc 1929533
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 225 gtgctggggggcggaatctggctggcgtcgcg 256 |||||||| ||||| |||||||||||| |||| Sbjct: 15389760 gtgctgggcggcggcatctggctggcgacgcg 15389791
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 225 gtgctggggggcggaatctggctggcgtcgcg 256 |||||||| ||||| |||||||||||| |||| Sbjct: 39052 gtgctgggcggcggcatctggctggcgacgcg 39083
>dbj|AK106158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A07, full insert sequence Length = 1201 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 225 gtgctggggggcggaatctggctggcgtcgcg 256 |||||||| ||||| |||||||||||| |||| Sbjct: 170 gtgctgggcggcggcatctggctggcgacgcg 201
>dbj|AK065366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020D06, full insert sequence Length = 2276 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 225 gtgctggggggcggaatctggctggcgtcgcg 256 |||||||| ||||| |||||||||||| |||| Sbjct: 177 gtgctgggcggcggcatctggctggcgacgcg 208
>dbj|AK061801.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H10, full insert sequence Length = 1216 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 225 gtgctggggggcggaatctggctggcgtcgcg 256 |||||||| ||||| |||||||||||| |||| Sbjct: 172 gtgctgggcggcggcatctggctggcgacgcg 203 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,569,165 Number of Sequences: 3902068 Number of extensions: 1569165 Number of successful extensions: 24466 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24381 Number of HSP's gapped (non-prelim): 85 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
