ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL032637.1|CEY43F8C Caenorhabditis elegans YAC Y43F8C, compl... 40 1.0
2ref|XM_953865.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.1
3ref|XM_330368.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.1
4gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, co... 38 4.1
5gb|AC115357.5| Mus musculus BAC clone RP23-81J4 from chromosome ... 38 4.1
6gb|AC098745.4| Mus musculus BAC clone RP23-122P16 from 18, compl... 38 4.1
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.1
8emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 38 4.1
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.1
10emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 38 4.1

>emb|AL032637.1|CEY43F8C Caenorhabditis elegans YAC Y43F8C, complete sequence
          Length = 120492

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ctctgcgtctctctctctat 84
             ||||||||||||||||||||
Sbjct: 75766 ctctgcgtctctctctctat 75785



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>ref|XM_953865.1| Neurospora crassa OR74A hypothetical protein (NCU09719.1) partial
           mRNA
          Length = 846

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  acctctgcgtctctctctc 81
           |||||||||||||||||||
Sbjct: 242 acctctgcgtctctctctc 260



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>ref|XM_330368.1| Neurospora crassa OR74A hypothetical protein (NCU09719.1) partial
           mRNA
          Length = 846

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  acctctgcgtctctctctc 81
           |||||||||||||||||||
Sbjct: 242 acctctgcgtctctctctc 260



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>gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, complete sequence
          Length = 187065

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    cctctgcgtctctctctct 82
             |||||||||||||||||||
Sbjct: 66224 cctctgcgtctctctctct 66206



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>gb|AC115357.5| Mus musculus BAC clone RP23-81J4 from chromosome 14, complete sequence
          Length = 233685

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     cctctgcgtctctctctct 82
              |||||||||||||||||||
Sbjct: 159762 cctctgcgtctctctctct 159744



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>gb|AC098745.4| Mus musculus BAC clone RP23-122P16 from 18, complete sequence
          Length = 213331

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    cctctgcgtctctctctct 82
             |||||||||||||||||||
Sbjct: 92542 cctctgcgtctctctctct 92560



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      cctctgcgtctctctctct 82
               |||||||||||||||||||
Sbjct: 4924543 cctctgcgtctctctctct 4924561



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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    cctctgcgtctctctctct 82
             |||||||||||||||||||
Sbjct: 13879 cctctgcgtctctctctct 13861



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      cctctgcgtctctctctct 82
               |||||||||||||||||||
Sbjct: 4924525 cctctgcgtctctctctct 4924543



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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 64    cctctgcgtctctctctct 82
             |||||||||||||||||||
Sbjct: 35416 cctctgcgtctctctctct 35398


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,059,883
Number of Sequences: 3902068
Number of extensions: 5059883
Number of successful extensions: 76031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75930
Number of HSP's gapped (non-prelim): 101
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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