>RPTN_MOUSE (P97347) Repetin|
          Length = 1130

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = +3

Query: 144 RQPASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTND 260
           RQ  S  Q   GRQ  SS     GRQ  SS Q   G  D
Sbjct: 432 RQDQSSHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQD 470



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = +3

Query: 144 RQPASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTND 260
           RQ  S  Q   GRQ  SS     GRQ  SS Q   G  D
Sbjct: 420 RQDQSPHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQD 458

>MSX1_CHICK (P28361) Homeobox protein MSX-1 (Msh homeobox 1-like protein)|
           (CHOX-7)
          Length = 249

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 144 RQPASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTND 260
           R   S P    GRQ  S   RAP R+P+   +   G  D
Sbjct: 21  RWKGSWPTAERGRQRRSRGFRAPSRRPSQPRRSDDGGTD 59

>TOP2_PEA (O24308) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
            (PsTopII)
          Length = 1462

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 147  QPASCPQRSSGRQPASSSHR-----APGRQPASSAQRSSGT 254
            Q  + P +  GR+PA+ + +     AP + PA+  +RS GT
Sbjct: 1302 QQKAAPVKKGGRKPAAQNAKKAPAKAPAKAPAAPKKRSVGT 1342

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 147 QPASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGT 254
           +P   P+ + G +P SSS   PGR   SSA R+S T
Sbjct: 90  KPGPGPKPTPGPRPGSSSGPKPGR---SSAARTSAT 122

>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF|
           hands-containing Rab-interacting protein) (Eferin)
          Length = 756

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 150 PASCPQRSSGR-QPASSSHRAPG 215
           PASCP+ +  R Q +SSSHRA G
Sbjct: 134 PASCPESAPFRLQGSSSSHRARG 156

>CARP7_CANAL (P43096) Candidapepsin-7 precursor (EC 3.4.23.24) (Aspartate|
           protease 7) (ACP 7) (Secreted aspartic protease 7)
          Length = 588

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 153 ASCPQRSSGRQPASSSHRAPGRQPASSAQRSSG 251
           AS    SS  + ASSS  +   QP+SSA + +G
Sbjct: 181 ASSASSSSSSEAASSSQPSEDSQPSSSANKKTG 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,285,351
Number of Sequences: 219361
Number of extensions: 207037
Number of successful extensions: 1141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)