ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06h10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1298 Score = 216 bits (109), Expect = 5e-53 Identities = 291/352 (82%) Strand = Plus / Plus Query: 114 ccggactgcttcgtcttcccgcccgatcagcgcccgccggcctcctctcaggctgtctcc 173 |||||||||||||| |||||| |||| | |||||| ||||||||| | ||| || || Sbjct: 121 ccggactgcttcgtgttcccggccgaccggcgcccaccggcctccaccgcggccgtgtcg 180 Query: 174 ctcccggtcatcgacctctctcgcggccgcgacgaggtccgccgcgccgtactcgacgcc 233 ||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||| Sbjct: 181 ctccccgtcatcgacctctccggcccccgcgacgccgtccgccgcgccgtcctcgacgcc 240 Query: 234 ggcngggagctcgggttcttccaggtggtcaaccacggcgtctccgcggaggcgatacga 293 ||| ||||||||| |||||||||||||| ||||||||||| | ||||| |||| || Sbjct: 241 ggcaaggagctcggcttcttccaggtggtgaaccacggcgtgccgccggagacgatgcgg 300 Query: 294 gacatggaagcggcgtgcgaggagttcttccggctccctgcggaggagaaggcggccttc 353 || |||| |||| ||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct: 301 gagatggcggcggtgtgcgaggagttcttccggctgccggcggaggacaaggcggcgttc 360 Query: 354 tactcggaggacacgggcaagcccaaccggctcttctccagcaccacgtacgagctcggc 413 ||||| || | || || |||||||| |||||||||||||||| |||||| ||||| Sbjct: 361 tactccgacgcggaggagaaccccaaccgcctcttctccagcaccatctacgaggtcggc 420 Query: 414 ggcgagaagtactggcgggactgcctccgcctcgcttgcggctcgcccgtcg 465 | | || |||||||| ||||||||||||||||| ||||||| ||||||| Sbjct: 421 gaccagcgctactggcgcgactgcctccgcctcgcctgcggcttccccgtcg 472
>dbj|AK060318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F03, full insert sequence Length = 1298 Score = 216 bits (109), Expect = 5e-53 Identities = 291/352 (82%) Strand = Plus / Plus Query: 114 ccggactgcttcgtcttcccgcccgatcagcgcccgccggcctcctctcaggctgtctcc 173 |||||||||||||| |||||| |||| | |||||| ||||||||| | ||| || || Sbjct: 121 ccggactgcttcgtgttcccggccgaccggcgcccaccggcctccaccgcggccgtgtcg 180 Query: 174 ctcccggtcatcgacctctctcgcggccgcgacgaggtccgccgcgccgtactcgacgcc 233 ||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||| Sbjct: 181 ctccccgtcatcgacctctccggcccccgcgacgccgtccgccgcgccgtcctcgacgcc 240 Query: 234 ggcngggagctcgggttcttccaggtggtcaaccacggcgtctccgcggaggcgatacga 293 ||| ||||||||| |||||||||||||| ||||||||||| | ||||| |||| || Sbjct: 241 ggcaaggagctcggcttcttccaggtggtgaaccacggcgtgccgccggagacgatgcgg 300 Query: 294 gacatggaagcggcgtgcgaggagttcttccggctccctgcggaggagaaggcggccttc 353 || |||| |||| ||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct: 301 gagatggcggcggtgtgcgaggagttcttccggctgccggcggaggacaaggcggcgttc 360 Query: 354 tactcggaggacacgggcaagcccaaccggctcttctccagcaccacgtacgagctcggc 413 ||||| || | || || |||||||| |||||||||||||||| |||||| ||||| Sbjct: 361 tactccgacgcggaggagaaccccaaccgcctcttctccagcaccatctacgaggtcggc 420 Query: 414 ggcgagaagtactggcgggactgcctccgcctcgcttgcggctcgcccgtcg 465 | | || |||||||| ||||||||||||||||| ||||||| ||||||| Sbjct: 421 gaccagcgctactggcgcgactgcctccgcctcgcctgcggcttccccgtcg 472
>dbj|AK121818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099A15, full insert sequence Length = 1301 Score = 210 bits (106), Expect = 3e-51 Identities = 293/354 (82%), Gaps = 5/354 (1%) Strand = Plus / Plus Query: 114 ccggactgcttcgtcttcccgcccgatcagcgcccgccggcctcctctcaggctgtctcc 173 |||||||||||||| |||||| |||| | |||||| ||||||||| | ||| || || Sbjct: 125 ccggactgcttcgtgttcccggccgaccggcgcccaccggcctccaccgcggccgtgtcg 184 Query: 174 ctcccggtcatcgacctctctcgcggccgcgacgaggtccgccgcgccgtactcgacgcc 233 ||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||| Sbjct: 185 ctccccgtcatcgacctctccggcccccgcgacgccgtccgccgcgccgtcctcgacgcc 244 Query: 234 ggcngggagctcgggttcttccaggtggtcaaccacggcgtctccgcggaggcgatacga 293 ||| ||||||||| |||||||||||||| ||||||||||| | ||||| |||| || Sbjct: 245 ggcaaggagctcggcttcttccaggtggtgaaccacggcgtgccgccggagacgatgcgg 304 Query: 294 gacatggaagcggcgtgcgaggagttcttccggctccctgcggaggagaaggcggccttc 353 || |||| |||| ||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct: 305 gagatggcggcggtgtgcgaggagttcttccggctgccggcggaggacaaggcggcgttc 364 Query: 354 tactcg--gaggacacgggcaagcccaaccggctcttctccagcaccacgtacgagctcg 411 |||||| | ||| || || |||||||| |||||||||||||||| |||||| ||| Sbjct: 365 tactcgacgcgga---ggagaaccccaaccgcctcttctccagcaccatctacgaggtcg 421 Query: 412 gcggcgagaagtactggcgggactgcctccgcctcgcttgcggctcgcccgtcg 465 ||| | || |||||||| ||||||||||||||||| ||||||| ||||||| Sbjct: 422 gcgaccagcgctactggcgcgactgcctccgcctcgcctgcggcttccccgtcg 475
>gb|AY104706.1| Zea mays PCO076122 mRNA sequence Length = 1382 Score = 168 bits (85), Expect = 1e-38 Identities = 216/260 (83%) Strand = Plus / Plus Query: 186 gacctctctcgcggccgcgacgaggtccgccgcgccgtactcgacgccggcngggagctc 245 |||||||| | ||||||||||||||| || |||||| | ||||| |||||| |||| || Sbjct: 231 gacctctccctcggccgcgacgaggtgcggcgcgccatcctcgaggccggcaaggagatc 290 Query: 246 gggttcttccaggtggtcaaccacggcgtctccgcggaggcgatacgagacatggaagcg 305 || |||||||||||||| ||||||||||||||| ||||||||| | |||||||| || Sbjct: 291 ggcttcttccaggtggtgaaccacggcgtctccctggaggcgatgcaggacatggagacg 350 Query: 306 gcgtgcgaggagttcttccggctccctgcggaggagaaggcggccttctactcggaggac 365 | |||| |||||||||||||||| || |||||||| ||||| | | |||||||||||| Sbjct: 351 gtgtgccaggagttcttccggctgccggcggaggacaaggccgggctgtactcggaggac 410 Query: 366 acgggcaagcccaaccggctcttctccagcaccacgtacgagctcggcggcgagaagtac 425 ||||| | | | | |||| ||| ||||||||||| || ||| |||| |||||||||| Sbjct: 411 acggggagggcgacccggatctactccagcaccatgttcgacacgggcgccgagaagtac 470 Query: 426 tggcgggactgcctccgcct 445 ||||| |||||||||||||| Sbjct: 471 tggcgcgactgcctccgcct 490
>gb|BT016779.1| Zea mays clone Contig612 mRNA sequence Length = 1486 Score = 119 bits (60), Expect = 9e-24 Identities = 224/279 (80%) Strand = Plus / Plus Query: 170 ctccctcccggtcatcgacctctctcgcggccgcgacgaggtccgccgcgccgtactcga 229 |||||| || || |||||| | |||||| |||||||||||||||||||||| | ||||| Sbjct: 287 ctccctgccagttatcgacatgtctcgcagccgcgacgaggtccgccgcgctatcctcga 346 Query: 230 cgccggcngggagctcgggttcttccaggtggtcaaccacggcgtctccgcggaggcgat 289 ||||||| |||| |||| ||||||| |||||| | |||||| || | | ||||| ||| Sbjct: 347 cgccggcatggagttcggcttcttcctggtggtggagcacggcatcccagaggaggtgat 406 Query: 290 acgagacatggaagcggcgtgcgaggagttcttccggctccctgcggaggagaaggcggc 349 || |||||| | || ||||||||||||||||| ||| || |||| | |||||| Sbjct: 407 gcgcgacatgctggaggtgtgcgaggagttcttccagctgccggcggcgagcaaggcgta 466 Query: 350 cttctactcggaggacacgggcaagcccaaccggctcttctccagcaccacgtacgagct 409 | | ||||||||||||| | |||||||||| |||||||| |||| || ||||| Sbjct: 467 catgtactcggaggacagtcagaggcccaaccggatcttctccggcacaacctacgacac 526 Query: 410 cggcggcgagaagtactggcgggactgcctccgcctcgc 448 |||||||| ||||||||||||||||||||||||||||| Sbjct: 527 gggcggcgacaagtactggcgggactgcctccgcctcgc 565
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 115 bits (58), Expect = 1e-22 Identities = 172/210 (81%) Strand = Plus / Plus Query: 256 aggtggtcaaccacggcgtctccgcggaggcgatacgagacatggaagcggcgtgcgagg 315 ||||||| ||||||||||| | ||||| |||| || || |||| |||| |||||||| Sbjct: 3732131 aggtggtgaaccacggcgtgccgccggagacgatgcgggagatggcggcggtgtgcgagg 3732190 Query: 316 agttcttccggctccctgcggaggagaaggcggccttctactcggaggacacgggcaagc 375 ||||||||||||| || |||||||| |||||||| |||||||| || | || || | Sbjct: 3732191 agttcttccggctgccggcggaggacaaggcggcgttctactccgacgcggaggagaacc 3732250 Query: 376 ccaaccggctcttctccagcaccacgtacgagctcggcggcgagaagtactggcgggact 435 ||||||| |||||||||||||||| |||||| |||||| | || |||||||| |||| Sbjct: 3732251 ccaaccgcctcttctccagcaccatctacgaggtcggcgaccagcgctactggcgcgact 3732310 Query: 436 gcctccgcctcgcttgcggctcgcccgtcg 465 ||||||||||||| ||||||| ||||||| Sbjct: 3732311 gcctccgcctcgcctgcggcttccccgtcg 3732340 Score = 109 bits (55), Expect = 8e-21 Identities = 123/146 (84%) Strand = Plus / Plus Query: 114 ccggactgcttcgtcttcccgcccgatcagcgcccgccggcctcctctcaggctgtctcc 173 |||||||||||||| |||||| |||| | |||||| ||||||||| | ||| || || Sbjct: 3731902 ccggactgcttcgtgttcccggccgaccggcgcccaccggcctccaccgcggccgtgtcg 3731961 Query: 174 ctcccggtcatcgacctctctcgcggccgcgacgaggtccgccgcgccgtactcgacgcc 233 ||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||| Sbjct: 3731962 ctccccgtcatcgacctctccggcccccgcgacgccgtccgccgcgccgtcctcgacgcc 3732021 Query: 234 ggcngggagctcgggttcttccaggt 259 ||| ||||||||| ||||||||||| Sbjct: 3732022 ggcaaggagctcggcttcttccaggt 3732047 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgtc 275 |||||||||||||||||| |||||||||||| Sbjct: 3734695 cgggttcttccaggtggtgaaccacggcgtc 3734725
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 115 bits (58), Expect = 1e-22 Identities = 172/210 (81%) Strand = Plus / Plus Query: 256 aggtggtcaaccacggcgtctccgcggaggcgatacgagacatggaagcggcgtgcgagg 315 ||||||| ||||||||||| | ||||| |||| || || |||| |||| |||||||| Sbjct: 76482 aggtggtgaaccacggcgtgccgccggagacgatgcgggagatggcggcggtgtgcgagg 76541 Query: 316 agttcttccggctccctgcggaggagaaggcggccttctactcggaggacacgggcaagc 375 ||||||||||||| || |||||||| |||||||| |||||||| || | || || | Sbjct: 76542 agttcttccggctgccggcggaggacaaggcggcgttctactccgacgcggaggagaacc 76601 Query: 376 ccaaccggctcttctccagcaccacgtacgagctcggcggcgagaagtactggcgggact 435 ||||||| |||||||||||||||| |||||| |||||| | || |||||||| |||| Sbjct: 76602 ccaaccgcctcttctccagcaccatctacgaggtcggcgaccagcgctactggcgcgact 76661 Query: 436 gcctccgcctcgcttgcggctcgcccgtcg 465 ||||||||||||| ||||||| ||||||| Sbjct: 76662 gcctccgcctcgcctgcggcttccccgtcg 76691 Score = 109 bits (55), Expect = 8e-21 Identities = 123/146 (84%) Strand = Plus / Plus Query: 114 ccggactgcttcgtcttcccgcccgatcagcgcccgccggcctcctctcaggctgtctcc 173 |||||||||||||| |||||| |||| | |||||| ||||||||| | ||| || || Sbjct: 76253 ccggactgcttcgtgttcccggccgaccggcgcccaccggcctccaccgcggccgtgtcg 76312 Query: 174 ctcccggtcatcgacctctctcgcggccgcgacgaggtccgccgcgccgtactcgacgcc 233 ||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||| Sbjct: 76313 ctccccgtcatcgacctctccggcccccgcgacgccgtccgccgcgccgtcctcgacgcc 76372 Query: 234 ggcngggagctcgggttcttccaggt 259 ||| ||||||||| ||||||||||| Sbjct: 76373 ggcaaggagctcggcttcttccaggt 76398 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgtc 275 |||||||||||||||||| |||||||||||| Sbjct: 79046 cgggttcttccaggtggtgaaccacggcgtc 79076
>dbj|AB024058.1| Hordeum vulgare Ids3 mRNA, complete cds Length = 1241 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 414 ggcgagaagtactggcgggactgcctccgcctcgc 448 |||||||| |||||||||||||||||||||||||| Sbjct: 356 ggcgagaaatactggcgggactgcctccgcctcgc 390 Score = 61.9 bits (31), Expect = 2e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 225 ctcgacgccggcngggagctcgggttcttccaggtggtcaaccacggcgtctcc 278 ||||| |||||| ||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 167 ctcgaggccggcaaggagctcggattcttccaggtcgtcaaccatggcgtctcc 220
>dbj|D37796.1|BLYIDS3NK Barley gene for Ids3, complete cds Length = 3043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 414 ggcgagaagtactggcgggactgcctccgcct 445 |||||||| ||||||||||||||||||||||| Sbjct: 985 ggcgagaaatactggcgggactgcctccgcct 1016
>ref|XM_476745.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1104 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgtc 275 |||||||||||||||||| |||||||||||| Sbjct: 198 cgggttcttccaggtggtgaaccacggcgtc 228
>dbj|AB024007.1| Hordeum vulgare gene for IDS3, complete cds Length = 4904 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 414 ggcgagaagtactggcgggactgcctccgcctcgc 448 ||||||| |||||||||||||||||||||||||| Sbjct: 2675 ggcgagagatactggcgggactgcctccgcctcgc 2709
>ref|XM_507337.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.31 mRNA Length = 1988 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||| ||||||||||| Sbjct: 478 cgggttcttccaggtggtgaaccacggcgt 507
>ref|XM_483774.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1422 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||| ||||||||||| Sbjct: 482 cgggttcttccaggtggtgaaccacggcgt 511
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||||||||||| Sbjct: 13876 ttcttccaggtggtcaaccacggcgt 13901
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 249 ttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||||||||||| Sbjct: 27290519 ttcttccaggtggtcaaccacggcgt 27290494 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacggc 272 ||||||||||||||||| ||||||||| Sbjct: 36014770 gggttcttccaggtggtgaaccacggc 36014796 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 318 ttcttccggctccctgcggaggagaaggc 346 ||||||||||| || |||||||||||||| Sbjct: 1224216 ttcttccggctgccggcggaggagaaggc 1224188 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtctccctcccggtcatcga 187 |||||||||||||||||||| Sbjct: 20369188 gtctccctcccggtcatcga 20369169
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||| ||||||||||| Sbjct: 28036448 cgggttcttccaggtggtgaaccacggcgt 28036477 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 18562795 tcggcttcttccaggtggtcaaccatggcgtcgccggggag 18562755 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 18536117 tcggcttcttccaggtggtcaaccatggcgtcgccggggag 18536077 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgtc 275 |||| |||||||||||||||||||||| |||| Sbjct: 18575761 tcggcttcttccaggtggtcaaccacgacgtc 18575792 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 256 aggtggtcaaccacggcgtctccgcggag 284 |||||||||||||||||||| ||| |||| Sbjct: 18540331 aggtggtcaaccacggcgtcgccggggag 18540303 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| ||||||||||| |||||||| |||||| ||| |||| Sbjct: 18502641 tcggcttcttccaggttgtcaaccatggcgtcgccggggag 18502601 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 252 ttccaggtggtcaaccacggcgtctccgcggag 284 ||||||||||| |||||||||||| ||| |||| Sbjct: 18485696 ttccaggtggtgaaccacggcgtcgccggggag 18485664
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 249 ttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||||||||||| Sbjct: 27381842 ttcttccaggtggtcaaccacggcgt 27381817 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacggc 272 ||||||||||||||||| ||||||||| Sbjct: 36104844 gggttcttccaggtggtgaaccacggc 36104870 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 318 ttcttccggctccctgcggaggagaaggc 346 ||||||||||| || |||||||||||||| Sbjct: 1224214 ttcttccggctgccggcggaggagaaggc 1224186 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtctccctcccggtcatcga 187 |||||||||||||||||||| Sbjct: 20362217 gtctccctcccggtcatcga 20362198
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 246 gggttcttccaggtggtcaaccacggcgtc 275 ||||||||||||||||| |||||||||||| Sbjct: 25221865 gggttcttccaggtggtgaaccacggcgtc 25221836 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 250 tcttccaggtggtcaaccacggcgt 274 ||||||||||||| ||||||||||| Sbjct: 32330397 tcttccaggtggtgaaccacggcgt 32330373
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||| ||||||||||| Sbjct: 113940 cgggttcttccaggtggtgaaccacggcgt 113969
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 246 gggttcttccaggtggtcaaccacggcgtc 275 ||||||||||||||||| |||||||||||| Sbjct: 122258 gggttcttccaggtggtgaaccacggcgtc 122229
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||| ||||||||||| Sbjct: 33943 cgggttcttccaggtggtgaaccacggcgt 33972
>dbj|AK108598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E04, full insert sequence Length = 1660 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacggcgtc 275 ||||||||||||||||| |||||||||||| Sbjct: 371 gggttcttccaggtggtgaaccacggcgtc 400
>dbj|AK107230.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E03, full insert sequence Length = 1988 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||| ||||||||||| Sbjct: 478 cgggttcttccaggtggtgaaccacggcgt 507
>dbj|AK107117.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A12, full insert sequence Length = 1422 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||||||||||| ||||||||||| Sbjct: 482 cgggttcttccaggtggtgaaccacggcgt 511
>dbj|AK059045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D08, full insert sequence Length = 1741 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacggcgtc 275 ||||||||||||||||| |||||||||||| Sbjct: 369 gggttcttccaggtggtgaaccacggcgtc 398
>dbj|D15051.1|BLYIDS2NK Hordeum vulgare gene for ids2, complete cds Length = 3411 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 167 tgtctccctcccggtcatcgacctctctcgcggccgcgacgaggtccgcc 216 ||||||||| || |||||||| | || |||||||||||||||||||||| Sbjct: 1798 tgtctccctgcccatcatcgacatgtcccgcggccgcgacgaggtccgcc 1847
>ref|XM_482200.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 248 tcggcttcttccaggtggtcaaccatggcgtcgccggggag 288
>ref|XM_482196.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1146 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 248 tcggcttcttccaggtggtcaaccatggcgtcgccggggag 288
>ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0040D23.1), mRNA Length = 1494 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 315 gagttcttccggctccctgcggaggagaaggcg 347 |||||||||||||| || ||||||||||||||| Sbjct: 271 gagttcttccggctgccggcggaggagaaggcg 303
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 315 gagttcttccggctccctgcggaggagaaggcg 347 |||||||||||||| || ||||||||||||||| Sbjct: 83216 gagttcttccggctgccggcggaggagaaggcg 83248
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 315 gagttcttccggctccctgcggaggagaaggcg 347 |||||||||||||| || ||||||||||||||| Sbjct: 7862 gagttcttccggctgccggcggaggagaaggcg 7894
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 315 gagttcttccggctccctgcggaggagaaggcg 347 |||||||||||||| || ||||||||||||||| Sbjct: 20367714 gagttcttccggctgccggcggaggagaaggcg 20367746 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgcgccgtactcgacgccgg 235 |||||||||||||||||||| Sbjct: 7298910 cgcgccgtactcgacgccgg 7298929
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 144818 tcggcttcttccaggtggtcaaccatggcgtcgccggggag 144778 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| |||||||||||||||||||| |||||| ||| |||| Sbjct: 118140 tcggcttcttccaggtggtcaaccatggcgtcgccggggag 118100 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgtc 275 |||| |||||||||||||||||||||| |||| Sbjct: 157784 tcggcttcttccaggtggtcaaccacgacgtc 157815 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 256 aggtggtcaaccacggcgtctccgcggag 284 |||||||||||||||||||| ||| |||| Sbjct: 122354 aggtggtcaaccacggcgtcgccggggag 122326 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| ||||||||||| |||||||| |||||| ||| |||| Sbjct: 84664 tcggcttcttccaggttgtcaaccatggcgtcgccggggag 84624 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 252 ttccaggtggtcaaccacggcgtctccgcggag 284 ||||||||||| |||||||||||| ||| |||| Sbjct: 67719 ttccaggtggtgaaccacggcgtcgccggggag 67687
>dbj|AK061357.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B08, full insert sequence Length = 1004 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 315 gagttcttccggctccctgcggaggagaaggcg 347 |||||||||||||| || ||||||||||||||| Sbjct: 386 gagttcttccggctgccggcggaggagaaggcg 418
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 315 gagttcttccggctccctgcggaggagaaggcg 347 |||||||||||||| || ||||||||||||||| Sbjct: 20378986 gagttcttccggctgccggcggaggagaaggcg 20379018 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgcgccgtactcgacgccgg 235 |||||||||||||||||||| Sbjct: 7302209 cgcgccgtactcgacgccgg 7302228
>ref|XM_482202.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgtc 275 |||| |||||||||||||||||||||| |||| Sbjct: 497 tcggcttcttccaggtggtcaaccacgacgtc 528
>dbj|AP004193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1756_G07 Length = 149457 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgtc 275 |||| |||||||||||||||||||||| |||| Sbjct: 3031 tcggcttcttccaggtggtcaaccacgacgtc 3062
>ref|XM_470509.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacggc 272 ||||||||||||||||| ||||||||| Sbjct: 241 gggttcttccaggtggtgaaccacggc 267
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacggc 272 ||||||||||||||||| ||||||||| Sbjct: 76281 gggttcttccaggtggtgaaccacggc 76307
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 197 cggccgcgacgaggtccgccgcgccgt 223 |||| |||||||||||||||||||||| Sbjct: 190335 cggcagcgacgaggtccgccgcgccgt 190361
>dbj|AK071828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118E08, full insert sequence Length = 1252 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacggc 272 ||||||||||||||||| ||||||||| Sbjct: 260 gggttcttccaggtggtgaaccacggc 286
>gb|AY104425.1| Zea mays PCO148306 mRNA sequence Length = 1554 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgt 274 ||||||||||| |||| |||||||||||||| Sbjct: 263 tcgggttcttcaaggtcgtcaaccacggcgt 293
>ref|NM_120642.2| Arabidopsis thaliana iron ion binding / isopenicillin-N synthase AT5G05600 mRNA, complete cds Length = 1399 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacgg 271 ||||||||||||||||| |||||||| Sbjct: 423 gggttcttccaggtggtgaaccacgg 448
>ref|NM_191296.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 984 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 147 cgggttcttcaaggtcgtcaaccacggcgt 176
>gb|AY551429.1| Hordeum vulgare subsp. vulgare GA 20-oxidase 3 (GA20ox3) mRNA, complete cds Length = 1443 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 ||||||||||||||| || ||||||||||| Sbjct: 294 cgggttcttccaggtcgtgaaccacggcgt 323
>gb|AC124345.4| Mus musculus BAC clone RP24-459N19 from chromosome 15, complete sequence Length = 184532 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 30 atctcgccttcccaaaatttcc 51 |||||||||||||||||||||| Sbjct: 80281 atctcgccttcccaaaatttcc 80260
>gb|AY133665.1| Arabidopsis thaliana AT5g05600/MOP10_14 mRNA, complete cds Length = 1116 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacgg 271 ||||||||||||||||| |||||||| Sbjct: 277 gggttcttccaggtggtgaaccacgg 302
>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence Length = 165658 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 30 atctcgccttcccaaaatttcc 51 |||||||||||||||||||||| Sbjct: 79255 atctcgccttcccaaaatttcc 79276
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 253 tccaggtggtcaaccacggcgt 274 |||||||||||||||||||||| Sbjct: 220388 tccaggtggtcaaccacggcgt 220409
>gb|AY039893.1| Arabidopsis thaliana AT5g05600/MOP10_14 mRNA, complete cds Length = 1256 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacgg 271 ||||||||||||||||| |||||||| Sbjct: 294 gggttcttccaggtggtgaaccacgg 319
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 31788659 cgggttcttcaaggtcgtcaaccacggcgt 31788688
>emb|BX831186.1|CNS09ZHB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS66ZH11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1202 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacgg 271 ||||||||||||||||| |||||||| Sbjct: 281 gggttcttccaggtggtgaaccacgg 306
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence Length = 203106 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 30 atctcgccttcccaaaatttcc 51 |||||||||||||||||||||| Sbjct: 57274 atctcgccttcccaaaatttcc 57295
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1414_E05 Length = 105222 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 66697 cgggttcttcaaggtcgtcaaccacggcgt 66726
>gb|AY085111.1| Arabidopsis thaliana clone 13012 mRNA, complete sequence Length = 1307 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacgg 271 ||||||||||||||||| |||||||| Sbjct: 423 gggttcttccaggtggtgaaccacgg 448
>ref|XM_345881.2| PREDICTED: Rattus norvegicus similar to Homeobox protein Hox-C11 (predicted) (LOC366996), mRNA Length = 2010 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 30 atctcgccttcccaaaatttcc 51 |||||||||||||||||||||| Sbjct: 20 atctcgccttcccaaaatttcc 41
>dbj|AB005241.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP10 Length = 57892 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 gggttcttccaggtggtcaaccacgg 271 ||||||||||||||||| |||||||| Sbjct: 51157 gggttcttccaggtggtgaaccacgg 51182
>dbj|AK101713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060N07, full insert sequence Length = 1749 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 298 cgggttcttcaaggtcgtcaaccacggcgt 327
>dbj|AK099350.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030O19, full insert sequence Length = 1639 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 298 cgggttcttcaaggtcgtcaaccacggcgt 327
>dbj|AK060714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D01, full insert sequence Length = 1271 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 297 cgggttcttcaaggtcgtcaaccacggcgt 326
>dbj|AK060666.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-C12, full insert sequence Length = 1651 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 297 cgggttcttcaaggtcgtcaaccacggcgt 326
>dbj|AB092485.1| Oryza sativa (japonica cultivar-group) OsGA2ox3 mRNA for gibberellin 2-oxidase, complete cds Length = 984 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 245 cgggttcttccaggtggtcaaccacggcgt 274 |||||||||| |||| |||||||||||||| Sbjct: 147 cgggttcttcaaggtcgtcaaccacggcgt 176
>emb|AL672263.13| Mouse DNA sequence from clone RP23-479M21 on chromosome X, complete sequence Length = 147014 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 gccttcccaaaatttccagatc 56 |||||||||||||||||||||| Sbjct: 30570 gccttcccaaaatttccagatc 30591
>gb|AC160979.2| Mus musculus BAC clone RP23-437B11 from chromosome 15, complete sequence Length = 216014 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 30 atctcgccttcccaaaatttcc 51 |||||||||||||||||||||| Sbjct: 207538 atctcgccttcccaaaatttcc 207559
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 244 tcgggttcttccaggtggtcaaccacggcgtctccgcggag 284 |||| ||||||||||| |||||||| |||||| ||| |||| Sbjct: 248 tcggcttcttccaggttgtcaaccatggcgtcgccggggag 288
>ref|XM_482188.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1478 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 252 ttccaggtggtcaaccacggcgtctccgcggag 284 ||||||||||| |||||||||||| ||| |||| Sbjct: 329 ttccaggtggtgaaccacggcgtcgccggggag 361
>ref|XM_468579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 591 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 318 ttcttccggctccctgcggaggagaaggc 346 ||||||||||| || |||||||||||||| Sbjct: 256 ttcttccggctgccggcggaggagaaggc 284
>ref|XM_467968.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1222 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 250 tcttccaggtggtcaaccacggcgt 274 ||||||||||||| ||||||||||| Sbjct: 282 tcttccaggtggtgaaccacggcgt 306
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tccgccgcgccgtactcgacg 231 ||||||||||||||||||||| Sbjct: 2807572 tccgccgcgccgtactcgacg 2807592
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tccgccgcgccgtactcgacg 231 ||||||||||||||||||||| Sbjct: 4035082 tccgccgcgccgtactcgacg 4035102
>emb|AL157409.16| Human DNA sequence from clone RP5-823D19 on chromosome 1q42.11-43 Contains the 5' end of the SIPA1L2 gene for signal-induced proliferation-associated 1 like 2, complete sequence Length = 143798 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 agcttctcttctcccctgctcacct 25 |||||||||||||| |||||||||| Sbjct: 39796 agcttctcttctccactgctcacct 39772
>ref|NM_001031168.1| Gallus gallus similar to hypothetical protein BC009331 (LOC422900), mRNA Length = 3245 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ctgcttcgtcttcccgcccga 139 ||||||||||||||||||||| Sbjct: 117 ctgcttcgtcttcccgcccga 137
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 cgcgacgaggtccgccgcgcc 221 ||||||||||||||||||||| Sbjct: 76525 cgcgacgaggtccgccgcgcc 76505
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tccgccgcgccgtactcgacg 231 ||||||||||||||||||||| Sbjct: 3741686 tccgccgcgccgtactcgacg 3741706
>emb|AJ720959.1| Gallus gallus mRNA for hypothetical protein, clone 31c10 Length = 3245 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ctgcttcgtcttcccgcccga 139 ||||||||||||||||||||| Sbjct: 117 ctgcttcgtcttcccgcccga 137
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 201 cgcgacgaggtccgccgcgccgtactcga 229 |||||||||| |||||||||||| ||||| Sbjct: 25485060 cgcgacgaggcccgccgcgccgtcctcga 25485088
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 318 ttcttccggctccctgcggaggagaaggc 346 ||||||||||| || |||||||||||||| Sbjct: 29118 ttcttccggctgccggcggaggagaaggc 29090
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 201 cgcgacgaggtccgccgcgccgtactcga 229 |||||||||| |||||||||||| ||||| Sbjct: 3377 cgcgacgaggcccgccgcgccgtcctcga 3405
>dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19 Length = 164483 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 201 cgcgacgaggtccgccgcgccgtactcga 229 |||||||||| |||||||||||| ||||| Sbjct: 159069 cgcgacgaggcccgccgcgccgtcctcga 159097
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 250 tcttccaggtggtcaaccacggcgt 274 ||||||||||||| ||||||||||| Sbjct: 106229 tcttccaggtggtgaaccacggcgt 106205
>dbj|AK119586.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C10, full insert sequence Length = 1949 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 201 cgcgacgaggtccgccgcgccgtactcga 229 |||||||||| |||||||||||| ||||| Sbjct: 966 cgcgacgaggcccgccgcgccgtcctcga 994
>dbj|AK104414.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B12, full insert sequence Length = 1268 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 318 ttcttccggctccctgcggaggagaaggc 346 ||||||||||| || |||||||||||||| Sbjct: 284 ttcttccggctgccggcggaggagaaggc 312
>dbj|AK072697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136E04, full insert sequence Length = 1222 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 250 tcttccaggtggtcaaccacggcgt 274 ||||||||||||| ||||||||||| Sbjct: 282 tcttccaggtggtgaaccacggcgt 306
>dbj|AK071416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093A18, full insert sequence Length = 875 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 318 ttcttccggctccctgcggaggagaaggc 346 ||||||||||| || |||||||||||||| Sbjct: 287 ttcttccggctgccggcggaggagaaggc 315
>dbj|AK068438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154K17, full insert sequence Length = 1285 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 318 ttcttccggctccctgcggaggagaaggc 346 ||||||||||| || |||||||||||||| Sbjct: 287 ttcttccggctgccggcggaggagaaggc 315
>dbj|AK068286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K15, full insert sequence Length = 1478 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 252 ttccaggtggtcaaccacggcgtctccgcggag 284 ||||||||||| |||||||||||| ||| |||| Sbjct: 329 ttccaggtggtgaaccacggcgtcgccggggag 361
>emb|AL132902.4|CEY71A12B Caenorhabditis elegans YAC Y71A12B, complete sequence Length = 137184 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 ttcccaaaatttccagatcaa 58 ||||||||||||||||||||| Sbjct: 11203 ttcccaaaatttccagatcaa 11223
>gb|AC145078.2| Mus musculus chromosome 1, clone RP24-439O10, complete sequence Length = 162864 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tcaaggcaagcagagccatg 74 |||||||||||||||||||| Sbjct: 32712 tcaaggcaagcagagccatg 32693
>ref|NM_195491.1| Oryza sativa (japonica cultivar-group) putative small GTP binding protein Rab2 (OSJNBa0014J14.25), mRNA Length = 591 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgcgccgtactcgacgccgg 235 |||||||||||||||||||| Sbjct: 141 cgcgccgtactcgacgccgg 122
>gb|AY551428.1| Hordeum vulgare subsp. vulgare GA 20-oxidase 1 (GA20ox1) mRNA, complete cds Length = 1459 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 372 ttcttccaggtcgtcaaccacggc 395
>ref|XM_606098.2| PREDICTED: Bos taurus similar to AHNAK nucleoprotein isoform 1 (LOC527701), mRNA Length = 10069 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 ccggctccctgcggaggagaaggc 346 ||||||||||||||||||| |||| Sbjct: 1314 ccggctccctgcggaggagcaggc 1337
>gb|AC111044.9| Mus musculus chromosome 10, clone RP23-299H4, complete sequence Length = 165614 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tcccaaaatttccagatcaa 58 |||||||||||||||||||| Sbjct: 128774 tcccaaaatttccagatcaa 128793
>gb|AY014277.1| Lolium perenne gibberellin 20-oxidase gene, complete cds Length = 2128 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 1070 ttcttccaggtcgtcaaccacggc 1093
>gb|AY136627.1| Hordeum vulgare subsp. vulgare plasma membrane P-type proton pump ATPase (Ha1) mRNA, complete cds Length = 3446 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatttccagatcaaggcaa 63 |||||||||||||||||||| Sbjct: 2203 aaatttccagatcaaggcaa 2184
>emb|Y14008.1|TAY14008 Triticum aestivum mRNA for gibberellin 20-oxidase, clone S39A Length = 1446 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 386 ttcttccaggtcgtcaaccacggc 409
>emb|AJ344078.1|HVU344078 Hordeum vulgare partial mRNA for plasma membrane H+-ATPase (ha1 gene) Length = 2280 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatttccagatcaaggcaa 63 |||||||||||||||||||| Sbjct: 1060 aaatttccagatcaaggcaa 1041
>emb|AJ310644.1|HVU310644 Hordeum vulgare partial ppa1 gene for putative plasma membrane proton ATPase Length = 808 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatttccagatcaaggcaa 63 |||||||||||||||||||| Sbjct: 135 aaatttccagatcaaggcaa 116
>emb|AJ295612.1|HVU295612 Hordeum vulgare partial mRNA for plasma membrane proton ATPase (PPA1 gene) Length = 1049 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatttccagatcaaggcaa 63 |||||||||||||||||||| Sbjct: 268 aaatttccagatcaaggcaa 249
>gb|DQ071620.1| Lolium perenne gibberellin 20-oxidase 1 mRNA, complete cds Length = 1399 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 375 ttcttccaggtcgtcaaccacggc 398
>gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0014J14, complete sequence Length = 191397 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgcgccgtactcgacgccgg 235 |||||||||||||||||||| Sbjct: 124271 cgcgccgtactcgacgccgg 124290
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aagcggcgtgcgaggagttc 320 |||||||||||||||||||| Sbjct: 1535653 aagcggcgtgcgaggagttc 1535672
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tctcctctgctccgtcccgc 104 |||||||||||||||||||| Sbjct: 29760001 tctcctctgctccgtcccgc 29760020
>gb|AY014281.1| Lolium perenne clone 8 gibberellin 20-oxidase mRNA, complete cds Length = 1167 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 211 ttcttccaggtcgtcaaccacggc 234
>gb|AY014280.1| Lolium perenne clone 1 gibberellin 20-oxidase mRNA, complete cds Length = 1171 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 211 ttcttccaggtcgtcaaccacggc 234
>gb|AY014276.1| Lolium perenne clone 4 gibberellin 20-oxidase mRNA, complete cds Length = 1175 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 211 ttcttccaggtcgtcaaccacggc 234
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtctccctcccggtcatcga 187 |||||||||||||||||||| Sbjct: 13488 gtctccctcccggtcatcga 13469
>emb|Y14009.1|TAY14009 Triticum aestivum mRNA for gibberellin 20-oxidase, clone S37E Length = 1451 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ttcttccaggtggtcaaccacggc 272 ||||||||||| |||||||||||| Sbjct: 320 ttcttccaggtcgtcaaccacggc 343
>ref|XM_315535.2| Anopheles gambiae str. PEST ENSANGP00000021760 (ENSANGG00000019271), partial mRNA Length = 915 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 gtgcgaggagttcttccggc 327 |||||||||||||||||||| Sbjct: 699 gtgcgaggagttcttccggc 718
>ref|XM_312916.2| Anopheles gambiae str. PEST ENSANGP00000014706 (ENSANGG00000012217), partial mRNA Length = 783 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 230 cgccggcngggagctcgggttct 252 ||||||| ||||||||||||||| Sbjct: 327 cgccggctgggagctcgggttct 349
>ref|XM_312724.2| Anopheles gambiae str. PEST ENSANGP00000017084 (ENSANGG00000014595), partial mRNA Length = 783 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 230 cgccggcngggagctcgggttct 252 ||||||| ||||||||||||||| Sbjct: 327 cgccggctgggagctcgggttct 349
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 cttcccgcccgatcagcgcccgcc 151 |||||||| ||||||||||||||| Sbjct: 5733521 cttcccgctcgatcagcgcccgcc 5733544
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gccgcgacgaggtccgccgc 218 |||||||||||||||||||| Sbjct: 2387631 gccgcgacgaggtccgccgc 2387612
>gb|AF059726.1|AF059726 Nelson Bay virus segment S3 nonstructural protein sigma NS gene, complete cds Length = 1192 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acgagctcggcggcgagaag 422 |||||||||||||||||||| Sbjct: 546 acgagctcggcggcgagaag 527
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 cgcggccgcgacgaggtccgccgcgccg 222 |||||||||||||||| |||||||||| Sbjct: 411247 cgcggccgcgacgaggctcgccgcgccg 411274
>gb|AC114588.9| Mus musculus chromosome 1, clone RP23-363M8, complete sequence Length = 167497 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tcaaggcaagcagagccatg 74 |||||||||||||||||||| Sbjct: 11278 tcaaggcaagcagagccatg 11297
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tctcctctgctccgtcccgc 104 |||||||||||||||||||| Sbjct: 40927 tctcctctgctccgtcccgc 40946 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,312,906 Number of Sequences: 3902068 Number of extensions: 3312906 Number of successful extensions: 73681 Number of sequences better than 10.0: 117 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71897 Number of HSP's gapped (non-prelim): 1766 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
