ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLYA2_PSEF5 (Q4K4P6) Serine hydroxymethyltransferase 2 (EC 2.1.2... 27 9.1

>GLYA2_PSEF5 (Q4K4P6) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 417

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 84  LTHDPRVSRSTKMSSALAVDVDARTG 161
           LTH  +VS S K+ +A+   +D RTG
Sbjct: 127 LTHGAKVSSSGKLYNAVQYGIDTRTG 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,162,841
Number of Sequences: 219361
Number of extensions: 255010
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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