ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06h03 |
|---|---|
| Clone Library Name | barley_pub |
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 32.7 bits (73), Expect = 0.61 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +1 Query: 1 PPPLPVPRDHR--LALPTAPPSFPVLSVRPSLPSIFV 105 PPP PR HR LA A PS P + V PS P FV Sbjct: 2843 PPPATPPRKHRGLLATQQAEPSPPSIVVTPSEPRSFV 2879
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 32.7 bits (73), Expect = 0.61 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 95 DGRDGRTERTGKDGGAVGSARRWSRGTGRGG 3 +GR G +R G GG +G RW G G GG Sbjct: 236 NGRGGGGDRWGGGGGGMGGGDRWGGGGGMGG 266
>SYE_PYRFU (Q8U064) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 572 Score = 30.8 bits (68), Expect = 2.3 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +2 Query: 125 GGQIRARSMGKYVELLDMGVRIAARFHSHCPQTAR 229 GG IR + + VE+L++G I ARFHSH + AR Sbjct: 469 GGFIRLKDLFN-VEILEVGDTIKARFHSHEYEVAR 502
>DNBI_HHV11 (P04296) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 30.8 bits (68), Expect = 2.3 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -2 Query: 137 ESGLLPLSLCSTKIDGRDGRTERTGKDGGAVGSA 36 E LP + T + G+T R G+DGG G+A Sbjct: 274 EGAALPADITFTAFEASQGKTPRGGRDGGGKGAA 307
>BSP1_YEAST (Q06604) Protein BSP1 (Binding of synaptojanin polyphosphoinositide| phosphatase domain protein 1) Length = 576 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +1 Query: 1 PPPLPVPRDHRLALPTAPPSFPVLSVRPSLPSIFVEQRERGRRPDS 138 PPPLP RDH + + P+L RP+ + R +PD+ Sbjct: 186 PPPLPTRRDH-IKITDGNEEKPLLPTRPNKAEVTESPSSRSIKPDA 230
>DNBI_HHV1K (P17470) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 Query: 137 ESGLLPLSLCSTKIDGRDGRTERTGKDGGAVGSA 36 E LP + T + G+T R G+DGG G A Sbjct: 274 EGAALPADITFTAFEASQGKTPRGGRDGGGKGPA 307
>VP61_NPVOP (O10270) 61 kDa protein homolog| Length = 474 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 1 PPPLPVPR-DHRLALPTAPPSFPVLSVRPSLP 93 PPP P P D ++P PP FP V S+P Sbjct: 267 PPPPPFPSADVTTSMPPPPPPFPSADVTTSMP 298
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = +1 Query: 1 PPPLPVPRDHR--LALPTAPPSFPVLSVRPSLPSIFV 105 PPP PR HR LA A PS P + V PS FV Sbjct: 2840 PPPATPPRKHRGLLATQQAEPSPPSILVTPSEHKSFV 2876
>VP6_AHSV6 (Q64913) VP6 protein (Minor inner core protein VP6)| Length = 369 Score = 29.3 bits (64), Expect = 6.8 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -2 Query: 110 CSTKIDGRDGRT-ERTGKDGGAVGSARRWSRGTGRGG 3 C+T G DG RTG GG VG R SR GRGG Sbjct: 88 CATSTGGGDGSAGARTGIGGGGVG--RVDSRSGGRGG 122
>VP6_AHSV3 (Q64909) VP6 protein (Minor inner core protein VP6)| Length = 369 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -2 Query: 110 CSTKIDGRDGRT-ERTGKDGGAVGSARRWSRGTGRGG 3 C+T G DG RTG GG VG R SR GRGG Sbjct: 88 CATSTGGGDGGAGARTGIGGGGVG--RVDSRSGGRGG 122
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +1 Query: 1 PPPLPVPRDHRLALPTAPPSF---PVLSVRPSLPSIFVEQRERGRRPDSS 141 PP P R ++ P + P P P+LP IFV Q + G P +S Sbjct: 748 PPSRPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPAS 797
>LBD13_ARATH (Q9AT61) LOB domain protein 13| Length = 268 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = +1 Query: 1 PPPLPVPRDHRL--ALPTAPPSFPVLSVRPSL 90 PPP P PR RL + P PP+ PV PS+ Sbjct: 196 PPPPPTPRPPRLLSSQPAPPPTPPVSLPSPSM 227
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 28.9 bits (63), Expect = 8.9 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 220 LRAVGVEPRGDAHPHVQQLHVLPHGSRSNLASFLSLSARRRLMAG 86 L+A+ R ++++LHVLP G R L S L + R L G Sbjct: 441 LKALSTASRSLHGCYLEELHVLPPGRREPLRSLRILHSARALFVG 485
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 28.9 bits (63), Expect = 8.9 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = -2 Query: 86 DGRTERTGKDGGAVGSARRWSRGTGRGG 3 D T + GGAVG RR RG RGG Sbjct: 201 DNSQRFTQRGGGAVGKNRRGGRGGNRGG 228 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,532,450 Number of Sequences: 219361 Number of extensions: 846117 Number of successful extensions: 3875 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3847 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
