ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06g06 |
|---|---|
| Clone Library Name | barley_pub |
>UMP8_ARATH (Q9SMN1) Unknown mitochondrial protein At3g48680| Length = 256 Score = 108 bits (270), Expect(2) = 3e-29 Identities = 48/59 (81%), Positives = 55/59 (93%) Frame = +2 Query: 284 DRVRWDYRGQRQLVPLGQWLPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTR 460 DRV+WDYRGQRQ++PLGQWLPKVAVDAYVAP VLAGQVTV DG+SVW+G+VLRGDL + Sbjct: 50 DRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNK 108 Score = 39.3 bits (90), Expect(2) = 3e-29 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = +1 Query: 445 GRPHKITLGFCAHVQERSVLHAAW 516 G +KIT+GFC++VQER V+HAAW Sbjct: 104 GDLNKITVGFCSNVQERCVVHAAW 127
>UMP7_ARATH (Q9FMV1) Unknown mitochondrial protein At5g63510| Length = 252 Score = 108 bits (270), Expect(2) = 3e-29 Identities = 48/59 (81%), Positives = 55/59 (93%) Frame = +2 Query: 284 DRVRWDYRGQRQLVPLGQWLPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTR 460 DRV+WDYRGQRQ++PLGQWLPKVAVDAYVAP VLAGQVTV DG+SVW+G+VLRGDL + Sbjct: 46 DRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNK 104 Score = 39.3 bits (90), Expect(2) = 3e-29 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = +1 Query: 445 GRPHKITLGFCAHVQERSVLHAAW 516 G +KIT+GFC++VQER V+HAAW Sbjct: 100 GDLNKITVGFCSNVQERCVVHAAW 123
>Y3753_PSEAE (P40882) Hypothetical protein PA3753| Length = 174 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = +2 Query: 359 DAYVAPEAVLAGQVTVHDGASVWSGSVLRGD 451 D+++AP A + G+V + GASVW G+VLRGD Sbjct: 15 DSWIAPSAAVIGKVRLDAGASVWFGAVLRGD 45
>Y304_METJA (Q57752) Hypothetical protein MJ0304| Length = 159 Score = 35.4 bits (80), Expect = 0.093 Identities = 14/40 (35%), Positives = 27/40 (67%) Frame = +2 Query: 350 VAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 ++ + +A AV+ G VT+ D +SVW +V+RGD+ + ++ Sbjct: 2 ISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIII 41
>CAIE_SALCH (Q57TJ2) Carnitine operon protein caiE| Length = 198 Score = 34.3 bits (77), Expect = 0.21 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V DA+V P AVL G V V G + + LRGD R +L Sbjct: 10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRQIL 52
>CAIE_SALTY (Q8ZRX6) Carnitine operon protein caiE| Length = 198 Score = 33.5 bits (75), Expect = 0.35 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V DA+V P AVL G V V G + + LRGD R +L Sbjct: 10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIL 52
>CAIE_SALTI (Q8Z9L6) Carnitine operon protein caiE| Length = 198 Score = 33.5 bits (75), Expect = 0.35 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V DA+V P AVL G V V G + + LRGD R +L Sbjct: 10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIL 52
>CAIE_SALPA (Q5PIL2) Carnitine operon protein caiE| Length = 198 Score = 33.5 bits (75), Expect = 0.35 Identities = 19/43 (44%), Positives = 24/43 (55%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V DA+V P AVL G V V G + + LRGD R +L Sbjct: 10 IPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIL 52
>HEPA_BHV1C (P52374) DNA helicase/primase complex-associated protein| Length = 748 Score = 31.2 bits (69), Expect = 1.8 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -3 Query: 433 AAPDGGTVMDGDLPGEHGFGSNVRVDGHLGKPLP-EWY*LPLPAVIP 296 +A GG ++D D HG V V GH P P W LPLP ++P Sbjct: 654 SALSGGDLLDAD----HGPRPYVLVAGHEAAPFPLPWGSLPLPVLLP 696
>CAIE_PROSL (Q8GB16) Carnitine operon protein caiE| Length = 197 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V AY+ P AVL G V + G + + LRGD R ++ Sbjct: 10 IPVVHPTAYIHPSAVLIGDVIIGAGVYIGPLASLRGDYGRLIV 52
>DPYL2_RAT (P47942) Dihydropyrimidinase-related protein 2 (DRP-2) (Turned on| after division, 64 kDa protein) (TOAD-64) (Collapsin response mediator protein 2) (CRMP-2) Length = 572 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 516 PGGVEDGPLLDVGAEPKSDLVRSPRSTEPLQTEAP 412 P G+ DGP+ +V PK+ S T P + +AP Sbjct: 495 PRGLYDGPVCEVSVTPKTVTPASSAKTSPAKQQAP 529
>DPYL2_MOUSE (O08553) Dihydropyrimidinase-related protein 2 (DRP-2) (ULIP 2| protein) Length = 572 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 516 PGGVEDGPLLDVGAEPKSDLVRSPRSTEPLQTEAP 412 P G+ DGP+ +V PK+ S T P + +AP Sbjct: 495 PRGLYDGPVCEVSVTPKTVTPASSAKTSPAKQQAP 529
>DPYL2_HUMAN (Q16555) Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin| response mediator protein 2) (CRMP-2) (N2A3) Length = 572 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 516 PGGVEDGPLLDVGAEPKSDLVRSPRSTEPLQTEAP 412 P G+ DGP+ +V PK+ S T P + +AP Sbjct: 495 PRGLYDGPVCEVSVTPKTVTPASSAKTSPAKQQAP 529
>DPYL2_CHICK (Q90635) Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin| response mediator protein CRMP-62) Length = 572 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 516 PGGVEDGPLLDVGAEPKSDLVRSPRSTEPLQTEAP 412 P G+ DGP+ +V PK+ S T P + +AP Sbjct: 495 PRGLYDGPVCEVSVTPKTVTPASSAKTSPAKQQAP 529
>DPYL2_BOVIN (O02675) Dihydropyrimidinase-related protein 2 (DRP-2)| (Neural-specific protein NSP60) Length = 572 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 516 PGGVEDGPLLDVGAEPKSDLVRSPRSTEPLQTEAP 412 P G+ DGP+ +V PK+ S T P + +AP Sbjct: 495 PRGLYDGPVCEVSVTPKTVTPASSAKTSPAKQQAP 529
>PAAY_ECOLI (P77181) Phenylacetic acid degradation protein paaY| Length = 196 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 344 PKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTR 460 P V +++V P AVL G V + G V + LRGD R Sbjct: 11 PVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGR 49
>NU4M_PELSU (O79677) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 459 Score = 30.0 bits (66), Expect = 3.9 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +2 Query: 320 LVPLGQWLPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSL 466 L L WLPK V+A +A +LAG + G + +++ LT+SL Sbjct: 210 LYGLHLWLPKAHVEAPIAGSMILAGVLLKLGGYGIIRVTLMLNPLTKSL 258
>CYSE_BACSU (Q06750) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 217 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +2 Query: 332 GQWLPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDL 454 G+ P + DA +A A + G +TV +G+ + +GSV+ D+ Sbjct: 115 GKRHPTIKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDV 155
>CAIE_SHIFL (Q83SQ8) Carnitine operon protein caiE| Length = 196 Score = 29.6 bits (65), Expect = 5.1 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V A+V P AVL G V V G + + LRGD R ++ Sbjct: 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIV 52
>CAIE_ECOLI (P39206) Carnitine operon protein caiE| Length = 196 Score = 29.6 bits (65), Expect = 5.1 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V A+V P AVL G V V G + + LRGD R ++ Sbjct: 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIV 52
>CAIE_ECOL6 (Q8FLA7) Carnitine operon protein caiE| Length = 196 Score = 29.6 bits (65), Expect = 5.1 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V A+V P AVL G V V G + + LRGD R ++ Sbjct: 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIV 52
>CAIE_ECO57 (Q8XA36) Carnitine operon protein caiE| Length = 196 Score = 29.6 bits (65), Expect = 5.1 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +2 Query: 341 LPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRSLL 469 +P V A+V P AVL G V V G + + LRGD R ++ Sbjct: 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIV 52
>GLMU_RHIME (Q92PS3) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 456 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +2 Query: 347 KVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDL 454 ++ +A+V + L V++ DGA V SGSV+ D+ Sbjct: 381 RIGANAFVGSNSSLVAPVSIGDGALVASGSVITEDV 416
>GSA_SYNP6 (P24630) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 432 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/62 (27%), Positives = 27/62 (43%) Frame = +2 Query: 284 DRVRWDYRGQRQLVPLGQWLPKVAVDAYVAPEAVLAGQVTVHDGASVWSGSVLRGDLTRS 463 D WD G R + +G W P A+ + PE + A +V + G S + L L Sbjct: 48 DAYAWDVDGNRYIDYVGTWGP--AICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEM 105 Query: 464 LL 469 ++ Sbjct: 106 VI 107
>VL96_IRV1 (P22856) L96 protein| Length = 867 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +3 Query: 345 PRWPSTRTLLPKPCSPGRSPSMTVPPSGAAP 437 P+ PS R P P P SPS+TV PS P Sbjct: 547 PKSPSVR---PPPPDPSNSPSITVDPSVTPP 574
>ODP2_LEIXX (Q6ABX9) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 452 Score = 28.9 bits (63), Expect = 8.7 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +3 Query: 390 PGRSPSMTVPPSGAAP 437 PGR+PS VPPSG P Sbjct: 153 PGRAPSTPVPPSGGGP 168
>CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antigen 5 homolog| (cTAGE-5 protein) (Meningioma-expressed antigen 6) Length = 779 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +1 Query: 139 FPVSPLSPSFRRRGAFPPPDP 201 FPV P S RR +FPPP P Sbjct: 680 FPVDPRSQFMRRGPSFPPPPP 700 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,026,968 Number of Sequences: 219361 Number of extensions: 927700 Number of successful extensions: 4385 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4378 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
