ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_465905.1| Oryza sativa (japonica cultivar-group), mRNA 272 1e-69
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
3dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
4dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
5gb|BT017912.1| Zea mays clone EL01N0518C06.c mRNA sequence 232 9e-58
6ref|NM_191704.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
7ref|XM_656123.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.8
8emb|Z98049.1|HS427A4 Human DNA sequence from clone RP3-427A4 on ... 42 1.8
9gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.8
10gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.8
11gb|AY096022.1| Tutcheria sophiae internal transcribed spacer 1, ... 42 1.8
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
14gb|AF456279.1| Tutcheria sophiae internal transcribed spacer 1, ... 42 1.8
15gb|AF456278.1| Tutcheria pingpienensis internal transcribed spac... 42 1.8
16gb|AF456275.1| Tutcheria kweichowensis internal transcribed spac... 42 1.8
17dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
18dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.8
20dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21dbj|AK107001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
22gb|BT018860.1| Zea mays clone EL01N0557E02.d mRNA sequence 40 7.0
23ref|XM_585733.2| PREDICTED: Bos taurus similar to solute carrier... 40 7.0
24gb|AE007245.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 7.0
25emb|CR450795.8| Zebrafish DNA sequence from clone CH211-203J19 i... 40 7.0
26gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
27emb|BX321900.10| Zebrafish DNA sequence from clone DKEYP-27C2 in... 40 7.0
28gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 7.0
29gb|AC092553.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
30dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
32gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 7.0
33gb|AC010096.10| Homo sapiens BAC clone RP11-364A16 from 2, compl... 40 7.0
34dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
35dbj|AK099871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
36gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0

>ref|XM_465905.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 777

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/252 (88%), Gaps = 1/252 (0%)
 Strand = Plus / Plus

                                                                       
Query: 266 gccgcggcggcnggtgcggatcgggtgcggtgggattaccgcgggcagcggcagctagta 325
           ||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| || 
Sbjct: 136 gccgccgcggcgggcgcggatcgggtgcggtgggactaccgcgggcagcgccagctggtg 195

                                                                       
Query: 326 ccactcgggcagtggcttcccaaggtggccgtcgacgcgtacgttgctcccgaagccgtg 385
           || |||||||||||| | |||||||||||||||||||| ||||| || ||||| ||||||
Sbjct: 196 ccgctcgggcagtggatgcccaaggtggccgtcgacgcctacgtcgcccccgaggccgtg 255

                                                                       
Query: 386 ctcgccgggcaggtcaccgtccatgacggtgcctccgtctggagcggctccgtgctgcgg 445
           || |||||||||||||||||| | ||||| |||||||| ||||||||| |||||||||| 
Sbjct: 256 ctggccgggcaggtcaccgtctacgacggcgcctccgtgtggagcggcgccgtgctgcgc 315

                                                                       
Query: 446 ggcgacctc-acaagatcactcttgggttctgcgcccacgtccaggagcggtccgtcctc 504
           ||||||||| |||||||||| || || ||||||||| ||||||||||||| | |||||||
Sbjct: 316 ggcgacctcaacaagatcaccctcggcttctgcgccaacgtccaggagcgatgcgtcctc 375

                       
Query: 505 cacgccgcctgg 516
           ||||||||||||
Sbjct: 376 cacgccgcctgg 387



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 173 gccgcggcgccttccctccgccggatcctctcctccaccgc 213
           ||||||||||| |||||||||||  |||||||| |||||||
Sbjct: 37  gccgcggcgccctccctccgccgcctcctctccgccaccgc 77



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/252 (88%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                            
Query: 266      gccgcggcggcnggtgcggatcgggtgcggtgggattaccgcgggcagcggcagctagta 325
                ||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| || 
Sbjct: 18242310 gccgccgcggcgggcgcggatcgggtgcggtgggactaccgcgggcagcgccagctggtg 18242251

                                                                            
Query: 326      ccactcgggcagtggcttcccaaggtggccgtcgacgcgtacgttgctcccgaagccgtg 385
                || |||||||||||| | |||||||||||||||||||| ||||| || ||||| ||||||
Sbjct: 18242250 ccgctcgggcagtggatgcccaaggtggccgtcgacgcctacgtcgcccccgaggccgtg 18242191

                                                                            
Query: 386      ctcgccgggcaggtcaccgtccatgacggtgcctccgtctggagcggctccgtgctgcgg 445
                || |||||||||||||||||| | ||||| |||||||| ||||||||| |||||||||| 
Sbjct: 18242190 ctggccgggcaggtcaccgtctacgacggcgcctccgtgtggagcggcgccgtgctgcgc 18242131

                                                                            
Query: 446      ggcgacctc-acaagatcactcttgggttctgcgcccacgtccaggagcggtccgtcctc 504
                ||||||||| |||||||||| || || ||||||||| ||||||||||||| | |||||||
Sbjct: 18242130 ggcgacctcaacaagatcaccctcggcttctgcgccaacgtccaggagcgatgcgtcctc 18242071

                            
Query: 505      cacgccgcctgg 516
                ||||||||||||
Sbjct: 18242070 cacgccgcctgg 18242059



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 173      gccgcggcgccttccctccgccggatcctctcctccaccgc 213
                ||||||||||| |||||||||||  |||||||| |||||||
Sbjct: 18242409 gccgcggcgccctccctccgccgcctcctctccgccaccgc 18242369



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>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0052M16
          Length = 145423

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/252 (88%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                         
Query: 266   gccgcggcggcnggtgcggatcgggtgcggtgggattaccgcgggcagcggcagctagta 325
             ||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| || 
Sbjct: 43523 gccgccgcggcgggcgcggatcgggtgcggtgggactaccgcgggcagcgccagctggtg 43464

                                                                         
Query: 326   ccactcgggcagtggcttcccaaggtggccgtcgacgcgtacgttgctcccgaagccgtg 385
             || |||||||||||| | |||||||||||||||||||| ||||| || ||||| ||||||
Sbjct: 43463 ccgctcgggcagtggatgcccaaggtggccgtcgacgcctacgtcgcccccgaggccgtg 43404

                                                                         
Query: 386   ctcgccgggcaggtcaccgtccatgacggtgcctccgtctggagcggctccgtgctgcgg 445
             || |||||||||||||||||| | ||||| |||||||| ||||||||| |||||||||| 
Sbjct: 43403 ctggccgggcaggtcaccgtctacgacggcgcctccgtgtggagcggcgccgtgctgcgc 43344

                                                                         
Query: 446   ggcgacctc-acaagatcactcttgggttctgcgcccacgtccaggagcggtccgtcctc 504
             ||||||||| |||||||||| || || ||||||||| ||||||||||||| | |||||||
Sbjct: 43343 ggcgacctcaacaagatcaccctcggcttctgcgccaacgtccaggagcgatgcgtcctc 43284

                         
Query: 505   cacgccgcctgg 516
             ||||||||||||
Sbjct: 43283 cacgccgcctgg 43272



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 173   gccgcggcgccttccctccgccggatcctctcctccaccgc 213
             ||||||||||| |||||||||||  |||||||| |||||||
Sbjct: 43622 gccgcggcgccctccctccgccgcctcctctccgccaccgc 43582



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>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0047E05
          Length = 184323

 Score =  272 bits (137), Expect = 1e-69
 Identities = 224/252 (88%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                          
Query: 266    gccgcggcggcnggtgcggatcgggtgcggtgggattaccgcgggcagcggcagctagta 325
              ||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| || 
Sbjct: 165711 gccgccgcggcgggcgcggatcgggtgcggtgggactaccgcgggcagcgccagctggtg 165652

                                                                          
Query: 326    ccactcgggcagtggcttcccaaggtggccgtcgacgcgtacgttgctcccgaagccgtg 385
              || |||||||||||| | |||||||||||||||||||| ||||| || ||||| ||||||
Sbjct: 165651 ccgctcgggcagtggatgcccaaggtggccgtcgacgcctacgtcgcccccgaggccgtg 165592

                                                                          
Query: 386    ctcgccgggcaggtcaccgtccatgacggtgcctccgtctggagcggctccgtgctgcgg 445
              || |||||||||||||||||| | ||||| |||||||| ||||||||| |||||||||| 
Sbjct: 165591 ctggccgggcaggtcaccgtctacgacggcgcctccgtgtggagcggcgccgtgctgcgc 165532

                                                                          
Query: 446    ggcgacctc-acaagatcactcttgggttctgcgcccacgtccaggagcggtccgtcctc 504
              ||||||||| |||||||||| || || ||||||||| ||||||||||||| | |||||||
Sbjct: 165531 ggcgacctcaacaagatcaccctcggcttctgcgccaacgtccaggagcgatgcgtcctc 165472

                          
Query: 505    cacgccgcctgg 516
              ||||||||||||
Sbjct: 165471 cacgccgcctgg 165460



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 173    gccgcggcgccttccctccgccggatcctctcctccaccgc 213
              ||||||||||| |||||||||||  |||||||| |||||||
Sbjct: 165810 gccgcggcgccctccctccgccgcctcctctccgccaccgc 165770



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>gb|BT017912.1| Zea mays clone EL01N0518C06.c mRNA sequence
          Length = 886

 Score =  232 bits (117), Expect = 9e-58
 Identities = 205/233 (87%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 281 gcggatcgggtgcggtgggattaccgcgggcagcggcagctagtaccactcgggcagtgg 340
           |||||||| ||||||||||| ||||| || ||||||||||| || || || || ||||||
Sbjct: 176 gcggatcgagtgcggtgggactaccggggccagcggcagctcgtccctctgggacagtgg 235

                                                                       
Query: 341 cttcccaaggtggccgtcgacgcgtacgttgctcccgaagccgtgctcgccgggcaggtc 400
            | |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 236 atgcccaaggtggccgttgacgcgtacgttgctcccgaggccgtgctcgccggccaggtc 295

                                                                       
Query: 401 accgtccatgacggtgcctccgtctggagcggctccgtgctgcggggcgacctc-acaag 459
           ||||| || ||||| |||||||||||||||||| |||| |||||||| |||||| |||||
Sbjct: 296 accgtgcacgacggcgcctccgtctggagcggcgccgtcctgcggggggacctcaacaag 355

                                                                
Query: 460 atcactcttgggttctgcgcccacgtccaggagcggtccgtcctccacgccgc 512
           ||||| || || ||||||||| ||||||||||||| | ||||||||| |||||
Sbjct: 356 atcacgctcggcttctgcgccaacgtccaggagcgatgcgtcctccatgccgc 408



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>ref|NM_191704.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1971

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 179  gcgccttccctccgccggatcctct 203
            ||||||||||||||||| |||||||
Sbjct: 1187 gcgccttccctccgccgcatcctct 1163



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>ref|XM_656123.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3611.2), mRNA
          Length = 1029

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 167 tccgccgccgcggcgccttccctcc 191
           ||||||||||||||| |||||||||
Sbjct: 695 tccgccgccgcggcgtcttccctcc 671



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>emb|Z98049.1|HS427A4 Human DNA sequence from clone RP3-427A4 on chromosome 6q26-27 Contains
             the 5' end of the RPS6KA2 gene for ribosomal protein S6
             kinase, 90kD, polypeptide 2 (RSK3), the gene for a novel
             protein and a CpG island, complete sequence
          Length = 149466

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   cggcgccttccctccgccgga 197
             |||||||||||||||||||||
Sbjct: 24792 cggcgccttccctccgccgga 24772



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 164     gcttccgccgccgcggcgcct 184
               |||||||||||||||||||||
Sbjct: 1929721 gcttccgccgccgcggcgcct 1929701



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 164     gcttccgccgccgcggcgcct 184
               |||||||||||||||||||||
Sbjct: 2659466 gcttccgccgccgcggcgcct 2659446



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>gb|AY096022.1| Tutcheria sophiae internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene and internal transcribed spacer
           2, complete sequence; and 28S ribosomal RNA gene,
           partial sequence
          Length = 670

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 142 cctgtctcgcctctctcgccg 162
           |||||||||||||||||||||
Sbjct: 97  cctgtctcgcctctctcgccg 117



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 185     tccctccgccggatcctctcctccaccgc 213
               |||||||||||| |||||||| |||||||
Sbjct: 6475925 tccctccgccggctcctctccaccaccgc 6475897



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 179      gcgccttccctccgccggatcctct 203
                ||||||||||||||||| |||||||
Sbjct: 29546216 gcgccttccctccgccgcatcctct 29546192



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>gb|AF456279.1| Tutcheria sophiae internal transcribed spacer 1, partial sequence;
           5.8S ribosomal RNA gene, complete sequence; and internal
           transcribed spacer 2, partial sequence
          Length = 653

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 142 cctgtctcgcctctctcgccg 162
           |||||||||||||||||||||
Sbjct: 86  cctgtctcgcctctctcgccg 106



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>gb|AF456278.1| Tutcheria pingpienensis internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 655

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 142 cctgtctcgcctctctcgccg 162
           |||||||||||||||||||||
Sbjct: 88  cctgtctcgcctctctcgccg 108



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>gb|AF456275.1| Tutcheria kweichowensis internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 661

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 142 cctgtctcgcctctctcgccg 162
           |||||||||||||||||||||
Sbjct: 94  cctgtctcgcctctctcgccg 114



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>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1142C05
          Length = 151457

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 179   gcgccttccctccgccggatcctct 203
             ||||||||||||||||| |||||||
Sbjct: 16036 gcgccttccctccgccgcatcctct 16012



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>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456F08
          Length = 156850

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 179    gcgccttccctccgccggatcctct 203
              ||||||||||||||||| |||||||
Sbjct: 112490 gcgccttccctccgccgcatcctct 112466



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 164     gcttccgccgccgcggcgcct 184
               |||||||||||||||||||||
Sbjct: 5349552 gcttccgccgccgcggcgcct 5349572



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>dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0638H11
          Length = 162746

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 185    tccctccgccggatcctctcctccaccgc 213
              |||||||||||| |||||||| |||||||
Sbjct: 142869 tccctccgccggctcctctccaccaccgc 142841



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>dbj|AK107001.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C06, full
            insert sequence
          Length = 2270

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 179  gcgccttccctccgccggatcctct 203
            ||||||||||||||||| |||||||
Sbjct: 1294 gcgccttccctccgccgcatcctct 1270



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>gb|BT018860.1| Zea mays clone EL01N0557E02.d mRNA sequence
          Length = 1390

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 cggatcctctcctccaccgc 213
           ||||||||||||||||||||
Sbjct: 29  cggatcctctcctccaccgc 48



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>ref|XM_585733.2| PREDICTED: Bos taurus similar to solute carrier family 24 member 6
           (LOC508887), mRNA
          Length = 4888

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 231 ccgctgcgccttcgtcctcaccaccccc 258
           ||||||||||||||||| ||||| ||||
Sbjct: 495 ccgctgcgccttcgtccgcaccaacccc 522



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>gb|AE007245.1| Sinorhizobium meliloti 1021 plasmid pSymA section 51 of 121 of the
            complete plasmid sequence
          Length = 10095

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 394  gcaggtcaccgtccatgacggtgcctcc 421
            |||||| ||||||||||||| |||||||
Sbjct: 9599 gcaggtgaccgtccatgacgatgcctcc 9626



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>emb|CR450795.8| Zebrafish DNA sequence from clone CH211-203J19 in linkage group 23,
              complete sequence
          Length = 162230

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    gagcggctccgtgctgcggg 446
              ||||||||||||||||||||
Sbjct: 139215 gagcggctccgtgctgcggg 139196



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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 168     ccgccgccgcggcgccttccctccgccggatc 199
               ||||||||| ||| ||| ||||||||||||||
Sbjct: 1775095 ccgccgccgaggcccctcccctccgccggatc 1775126



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>emb|BX321900.10| Zebrafish DNA sequence from clone DKEYP-27C2 in linkage group 23,
             complete sequence
          Length = 73352

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   gagcggctccgtgctgcggg 446
             ||||||||||||||||||||
Sbjct: 67404 gagcggctccgtgctgcggg 67423



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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    agcttccgccgccgcggcgccttc 186
              ||||| ||||||||||||||||||
Sbjct: 648727 agcttgcgccgccgcggcgccttc 648750



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>gb|AC092553.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0072F04, complete sequence
          Length = 133121

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 168   ccgccgccgcggcgccttccctccgccggatc 199
             ||||||||| ||| ||| ||||||||||||||
Sbjct: 26669 ccgccgccgaggcccctcccctccgccggatc 26700



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 168     ccgccgccgcggcgccttccctccgccggatc 199
               ||||||||| ||| ||| ||||||||||||||
Sbjct: 1775095 ccgccgccgaggcccctcccctccgccggatc 1775126



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 155      tctcgccgagcttccgccgccgcg 178
                |||||||| |||||||||||||||
Sbjct: 16731447 tctcgccgcgcttccgccgccgcg 16731424



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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   cgtccaggagcggtccgtcc 502
             ||||||||||||||||||||
Sbjct: 89399 cgtccaggagcggtccgtcc 89380



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>gb|AC010096.10| Homo sapiens BAC clone RP11-364A16 from 2, complete sequence
          Length = 163198

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ttccctgtctcgcctctctc 158
             ||||||||||||||||||||
Sbjct: 44379 ttccctgtctcgcctctctc 44398



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>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0047B10
          Length = 158798

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 155   tctcgccgagcttccgccgccgcg 178
             |||||||| |||||||||||||||
Sbjct: 80141 tctcgccgcgcttccgccgccgcg 80118



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>dbj|AK099871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111F09, full
           insert sequence
          Length = 4339

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 cccgctgcgccttcgtcctc 249
           ||||||||||||||||||||
Sbjct: 221 cccgctgcgccttcgtcctc 240



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 168     ccgccgccgcggcgccttccctccgccggatc 199
               ||||||||| ||| ||| ||||||||||||||
Sbjct: 1775046 ccgccgccgaggcccctcccctccgccggatc 1775077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,176,883
Number of Sequences: 3902068
Number of extensions: 3176883
Number of successful extensions: 64252
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63388
Number of HSP's gapped (non-prelim): 859
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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