ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06g05 |
|---|---|
| Clone Library Name | barley_pub |
>NECP2_MOUSE (Q9D1J1) Adaptin ear-binding coat-associated protein 2 (NECAP-2)| Length = 266 Score = 69.7 bits (169), Expect = 4e-12 Identities = 35/86 (40%), Positives = 53/86 (61%) Frame = +2 Query: 236 EPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIXLED 415 E E VL E +VY IPPR T YRA EW +++ +W G L++ ++G+ I LED Sbjct: 2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61 Query: 416 KSTGELYARAFLREGEPHPVEAVIDS 493 +++GEL+A+A + + VE+V DS Sbjct: 62 RTSGELFAQAPVDQFPGTAVESVTDS 87
>NECP2_RAT (Q6P756) Adaptin ear-binding coat-associated protein 2 (NECAP-2)| Length = 263 Score = 69.7 bits (169), Expect = 4e-12 Identities = 35/86 (40%), Positives = 53/86 (61%) Frame = +2 Query: 236 EPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIXLED 415 E E VL E +VY IPPR T YRA EW +++ +W G L++ ++G+ I LED Sbjct: 2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61 Query: 416 KSTGELYARAFLREGEPHPVEAVIDS 493 +++GEL+A+A + + VE+V DS Sbjct: 62 RTSGELFAQAPVDQFPGTAVESVTDS 87
>NECP2_HUMAN (Q9NVZ3) Adaptin ear-binding coat-associated protein 2 (NECAP-2)| Length = 263 Score = 68.6 bits (166), Expect = 9e-12 Identities = 34/86 (39%), Positives = 53/86 (61%) Frame = +2 Query: 236 EPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIXLED 415 E E VL + +VY IPPR T YRA EW +++ +W G L++ ++G+ I LED Sbjct: 2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61 Query: 416 KSTGELYARAFLREGEPHPVEAVIDS 493 +++GEL+A+A + + VE+V DS Sbjct: 62 RTSGELFAQAPVDQFPGTAVESVTDS 87
>NECP1_PONPY (Q5R630) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 275 Score = 64.3 bits (155), Expect = 2e-10 Identities = 37/89 (41%), Positives = 53/89 (59%) Frame = +2 Query: 227 AETEPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIX 406 AE E E+V V V+ VY IPPR + YRA +W +++ W G L++ S+G+ I Sbjct: 3 AELEYESVLCVKPDVS---VYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIK 59 Query: 407 LEDKSTGELYARAFLREGEPHPVEAVIDS 493 LEDK +GEL+A+A + + VE V DS Sbjct: 60 LEDKVSGELFAQAPVEQYPGIAVETVTDS 88
>NECAP_DROME (Q9VXB0) NECAP-like protein CG9132| Length = 246 Score = 64.3 bits (155), Expect = 2e-10 Identities = 31/81 (38%), Positives = 48/81 (59%) Frame = +2 Query: 251 ELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIXLEDKSTGE 430 E VL E ++Y IPPR + YRA +WN+ + W G +++V++G V+ LEDK++G Sbjct: 4 ESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGA 63 Query: 431 LYARAFLREGEPHPVEAVIDS 493 L+A + +EAV DS Sbjct: 64 LFANCPIDTYPGVAIEAVSDS 84
>NECP1_MOUSE (Q9CR95) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 275 Score = 63.5 bits (153), Expect = 3e-10 Identities = 37/89 (41%), Positives = 53/89 (59%) Frame = +2 Query: 227 AETEPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIX 406 AE E E+V V V+ VY IPPR + YRA +W +++ W G L++ S+G+ I Sbjct: 3 AELEYESVLCVKPDVS---VYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIK 59 Query: 407 LEDKSTGELYARAFLREGEPHPVEAVIDS 493 LEDK +GEL+A+A + + VE V DS Sbjct: 60 LEDKVSGELFAQAPVEQYPGIAVETVTDS 88
>NECP1_HUMAN (Q8NC96) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 275 Score = 63.5 bits (153), Expect = 3e-10 Identities = 33/81 (40%), Positives = 48/81 (59%) Frame = +2 Query: 251 ELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIXLEDKSTGE 430 E VL + VY IPPR + YRA +W +++ W G L++ S+G+ I LEDK +GE Sbjct: 8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGE 67 Query: 431 LYARAFLREGEPHPVEAVIDS 493 L+A+A + + VE V DS Sbjct: 68 LFAQAPVEQYPGIAVETVTDS 88
>NECP1_RAT (P69682) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 277 Score = 63.5 bits (153), Expect = 3e-10 Identities = 37/89 (41%), Positives = 53/89 (59%) Frame = +2 Query: 227 AETEPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEECVIX 406 AE E E+V V V+ VY IPPR + YRA +W +++ W G L++ S+G+ I Sbjct: 3 AELEYESVLCVKPDVS---VYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIK 59 Query: 407 LEDKSTGELYARAFLREGEPHPVEAVIDS 493 LEDK +GEL+A+A + + VE V DS Sbjct: 60 LEDKVSGELFAQAPVEQYPGIAVETVADS 88
>KMS2_SCHPO (O43087) Karyogamy meiotic segregation protein 2| Length = 457 Score = 31.2 bits (69), Expect = 1.6 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = -2 Query: 385 PADNLKCPFPSPFVHIPLI 329 P NLK FPSPF HIP I Sbjct: 327 PYQNLKITFPSPFFHIPYI 345
>LCF4_YEAST (P47912) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (Fatty acid activator 4) Length = 694 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = +2 Query: 251 ELVLFQVAECYVYLIPPRKTAASYRADEW----NVNKWAWEGALKVVSRGEECVIXL 409 EL+ C Y P +TAA++ D W ++ +W +G +K++ R + V L Sbjct: 501 ELLFKGAPICSEYYKNPEETAAAFTDDGWFRTGDIAEWTPKGQVKIIDRKKNLVKTL 557
>ATPF2_MOUSE (Q91YY4) ATP synthase mitochondrial F1 complex assembly factor 2,| mitochondrial precursor Length = 289 Score = 29.6 bits (65), Expect = 4.6 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 78 RSSDPTTAYPTGPLPNHPRTRFAPPLQRE 164 R SDPT + GP P P + PP +R+ Sbjct: 19 RLSDPTVSVWPGPAPQPPARAYVPPTERK 47
>LPPW_MYCTU (P65304) Putative lipoprotein lppW precursor| Length = 314 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/72 (26%), Positives = 33/72 (45%) Frame = +2 Query: 218 QPQAETEPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEEC 397 +PQA +P+ VEL+L + PPR AAS + + + + G Sbjct: 41 RPQARPQPQPVELLLRAIT-------PPRAPAASPNVGFGELPTRVRQATDEAAAMGATL 93 Query: 398 VIXLEDKSTGEL 433 + + D++TG+L Sbjct: 94 SVAVLDRATGQL 105
>LPPW_MYCBO (P65305) Putative lipoprotein lppW precursor| Length = 314 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/72 (26%), Positives = 33/72 (45%) Frame = +2 Query: 218 QPQAETEPEAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGALKVVSRGEEC 397 +PQA +P+ VEL+L + PPR AAS + + + + G Sbjct: 41 RPQARPQPQPVELLLRAIT-------PPRAPAASPNVGFGELPTRVRQATDEAAAMGATL 93 Query: 398 VIXLEDKSTGEL 433 + + D++TG+L Sbjct: 94 SVAVLDRATGQL 105
>ACSL1_HUMAN (P33121) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 1) (LACS 1) (Palmitoyl-CoA ligase 1) (Long-chain fatty acid CoA ligase 2) (Long-chain acyl-CoA synthetase 2) (LACS 2) (Acyl-CoA synthetase 1) (ACS1) (Pa Length = 698 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Frame = +2 Query: 287 YLIPPRKTAASYRADEW----NVNKWAWEGALKVVSR 385 YL P KTA + D W ++ KW G LK++ R Sbjct: 519 YLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDR 555
>ACSL1_CAVPO (Q9JID6) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 1) (LACS 1) (Palmitoyl-CoA ligase) Length = 698 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Frame = +2 Query: 287 YLIPPRKTAASYRADEW----NVNKWAWEGALKVVSR 385 YL P KTA + D W ++ KW G LK++ R Sbjct: 519 YLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDR 555
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 66 SRHIRSSDPTTAYPTGPLPNHPRTRFAPPLQREVYTPTS 182 S+ + SS A TGP P+ PR AP R +P S Sbjct: 34 SKKVNSSFQLPAKNTGPTPSEPRLALAPVGPRAAVSPPS 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,966,206 Number of Sequences: 219361 Number of extensions: 939198 Number of successful extensions: 3142 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3002 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3141 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
