ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192779.1| Oryza sativa (japonica cultivar-group), predic... 266 6e-68
2dbj|AK106098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
3dbj|AK103190.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
5dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
6ref|NM_115722.2| Arabidopsis thaliana unknown protein AT3G58600 ... 54 4e-04
7gb|AY086716.1| Arabidopsis thaliana clone 27 mRNA, complete sequ... 54 4e-04
8gb|BT001934.1| Arabidopsis thaliana clone C105396 unknown protei... 54 4e-04
9gb|AY045986.1| Arabidopsis thaliana At3g58600 mRNA sequence 46 0.11
10emb|AL137082.1|ATF14P22 Arabidopsis thaliana DNA chromosome 3, B... 46 0.11
11gb|AC074327.6| Homo sapiens chromosome 10 clone RP11-556E13, com... 44 0.43
12gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from... 44 0.43
13gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Ca... 44 0.43
14gb|AC091842.3| Homo sapiens chromosome 5 clone CTD-2155B8, compl... 44 0.43
15gb|AC096721.2| Homo sapiens BAC clone RP11-19C24 from 4, complet... 44 0.43
16gb|AC068919.4| Homo sapiens BAC clone RP11-340I19 from 2, comple... 44 0.43
17gb|AF265141.1|AF265141 Synthetic construct Hepatitis C virus typ... 44 0.43
18gb|AF265140.1|AF265140 Synthetic construct Hepatitis C virus typ... 44 0.43
19gb|AF265139.1|AF265139 Synthetic construct Hepatitis C virus typ... 44 0.43
20gb|AY105364.1| Zea mays PCO091249 mRNA sequence 44 0.43
21gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.7
22gb|AY714242.1| Homo sapiens interleukin 8 receptor, beta (IL8RB)... 42 1.7
23gb|AC093928.2| Homo sapiens chromosome 3 clone RP11-241K3, compl... 42 1.7
24gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 1.7
25gb|AC079141.7| Homo sapiens BAC clone RP11-502A23 from 4, comple... 42 1.7
26ref|NM_174834.1| Bos taurus myosin, heavy polypeptide 10, non-mu... 42 1.7
27gb|AC124768.4| Homo sapiens BAC clone RP11-1188G23 from 2, compl... 42 1.7
28gb|AC008050.6|AC008050 Homo sapiens chromosome 14 clone RP11-141... 42 1.7
29ref|XM_233477.3| PREDICTED: Rattus norvegicus similar to potassi... 42 1.7
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.7
31gb|M99412.1|HUMIL8R Human interleukin-8 receptor (IL8RB) gene, c... 42 1.7
32dbj|AB022023.1| Bos taurus mRNA for nonmuscle myosin heavy chain... 42 1.7
33gb|DQ213360.1| Taeniopygia guttata clone 0063P0025F03 mRNA sequence 40 6.7
34ref|NM_002821.3| Homo sapiens PTK7 protein tyrosine kinase 7 (PT... 40 6.7
35ref|NM_152882.2| Homo sapiens PTK7 protein tyrosine kinase 7 (PT... 40 6.7
36ref|NM_152881.2| Homo sapiens PTK7 protein tyrosine kinase 7 (PT... 40 6.7
37ref|NM_152883.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PT... 40 6.7
38ref|NM_152880.2| Homo sapiens PTK7 protein tyrosine kinase 7 (PT... 40 6.7
39gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 6.7
40gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.7
41ref|NM_001032578.1| Ciona intestinalis suppressor of hairless ho... 40 6.7
42gb|BC002377.2| Homo sapiens PTK7 protein tyrosine kinase 7, mRNA... 40 6.7
43gb|BC014626.2| Homo sapiens PTK7 protein tyrosine kinase 7, mRNA... 40 6.7
44emb|AL355385.15| Human DNA sequence from clone RP11-387M24 on ch... 40 6.7
45gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.7
46gb|AC016252.21| Homo sapiens 3 BAC RP11-461M2 (Roswell Park Canc... 40 6.7
47gb|BC071557.1| Homo sapiens PTK7 protein tyrosine kinase 7, tran... 40 6.7
48gb|AF531872.1| Homo sapiens transmembrane receptor precursor PTK... 40 6.7
49gb|AF531871.1| Homo sapiens transmembrane receptor precursor PTK... 40 6.7
50gb|AF531870.1| Homo sapiens transmembrane receptor precursor PTK... 40 6.7
51gb|AF531869.1| Homo sapiens transmembrane receptor precursor PTK... 40 6.7
52gb|AF531868.1| Homo sapiens transmembrane receptor precursor PTK... 40 6.7
53gb|AF085173.1| Ciona intestinalis suppressor of hairless homolog... 40 6.7
54gb|AC079904.31| Homo sapiens 12 BAC RP11-84J24 (Roswell Park Can... 40 6.7
55gb|AF447157.1|F447157S01 Homo sapiens protein tyrosine kinase-7 ... 40 6.7
56gb|U72144.2|U72144 Streptomyces collinus 1-cyclohexenylcarbonyl ... 40 6.7
57gb|AC162311.7| Mus musculus 6 BAC RP23-81K19 (Roswell Park Cance... 40 6.7
58gb|U40271.2|HSU40271 Homo sapiens transmembrane receptor precurs... 40 6.7
59dbj|AK037327.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 6.7
60gb|AC084759.2|AC084759 Homo sapiens chromosome 15 clone RP11-643... 40 6.7
61dbj|AB210713.1| Ciona intestinalis Ci-Su(H)/RBP-J mRNA, complete... 40 6.7
62gb|AC007254.3| Homo sapiens BAC clone RP11-509C20 from 2, comple... 40 6.7
63gb|AF163865.1|AF163865 Mus musculus alpha-synuclein (Snca) gene,... 40 6.7
64gb|AC013408.7| Homo sapiens BAC clone RP11-469G18 from 2, comple... 40 6.7
65dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.7
66dbj|AK173387.1| Ciona intestinalis cDNA, clone:cieg052m15, full ... 40 6.7
67gb|AC156553.17| Mus musculus chromosome 8, clone RP23-106I21, co... 40 6.7
68gb|AC154010.3| Mus musculus 6 BAC RP24-493P16 (Roswell Park Canc... 40 6.7
69emb|AL929067.8| Mouse DNA sequence from clone RP24-69A20 on chro... 40 6.7
70emb|AL683877.10| Mouse DNA sequence from clone RP23-120P2 on chr... 40 6.7
71emb|AL772187.6| Mouse DNA sequence from clone RP23-38K18 on chro... 40 6.7 
>ref|NM_192779.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 738

 Score =  266 bits (134), Expect = 6e-68
 Identities = 223/253 (88%)
 Strand = Plus / Plus

                                                                       
Query: 242 gaggcggtggagctcgtgctgttccaggtcgccgagtgctacgtctatctaatacctcct 301
           |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| 
Sbjct: 46  gaggcggtggagctcgtgctgttccaggtcgctgagtgctacgtctacctgatacctccc 105

                                                                       
Query: 302 aggaagacggccgcctcttacagggctgatgagtggaatgtgaacaaatgggcttgggaa 361
           |||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 106 aggaagacagccgcctcctacagggctgatgaatggaacgtcaacaagtgggcttgggaa 165

                                                                       
Query: 362 ggggcacttaaggttgtcagcaggggagaagaatgtgttatcanactggaggacaagagc 421
           ||| | || |||||||||||||  |||||||| ||  | |||| |||||| || |||| |
Sbjct: 166 gggactctcaaggttgtcagcaaaggagaagagtgcatcatcaaactggaagataagaac 225

                                                                       
Query: 422 actggtgagctgtatgctagggcatttctcagagaaggcgaaccacatccggtggaagct 481
           || || |||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct: 226 acaggggagctgtacgctagggcattcctcagagaagacgaaccacatccggtggaacct 285

                        
Query: 482 gtaattgatagca 494
           || ||||||||||
Sbjct: 286 gttattgatagca 298
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>dbj|AK106098.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-C03, full
           insert sequence
          Length = 1333

 Score =  266 bits (134), Expect = 6e-68
 Identities = 223/253 (88%)
 Strand = Plus / Plus

                                                                       
Query: 242 gaggcggtggagctcgtgctgttccaggtcgccgagtgctacgtctatctaatacctcct 301
           |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| 
Sbjct: 291 gaggcggtggagctcgtgctgttccaggtcgctgagtgctacgtctacctgatacctccc 350

                                                                       
Query: 302 aggaagacggccgcctcttacagggctgatgagtggaatgtgaacaaatgggcttgggaa 361
           |||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 351 aggaagacagccgcctcctacagggctgatgaatggaacgtcaacaagtgggcttgggaa 410

                                                                       
Query: 362 ggggcacttaaggttgtcagcaggggagaagaatgtgttatcanactggaggacaagagc 421
           ||| | || |||||||||||||  |||||||| ||  | |||| |||||| || |||| |
Sbjct: 411 gggactctcaaggttgtcagcaaaggagaagagtgcatcatcaaactggaagataagaac 470

                                                                       
Query: 422 actggtgagctgtatgctagggcatttctcagagaaggcgaaccacatccggtggaagct 481
           || || |||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct: 471 acaggggagctgtacgctagggcattcctcagagaagacgaaccacatccggtggaacct 530

                        
Query: 482 gtaattgatagca 494
           || ||||||||||
Sbjct: 531 gttattgatagca 543
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>dbj|AK103190.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121N24, full
           insert sequence
          Length = 1439

 Score =  266 bits (134), Expect = 6e-68
 Identities = 223/253 (88%)
 Strand = Plus / Plus

                                                                       
Query: 242 gaggcggtggagctcgtgctgttccaggtcgccgagtgctacgtctatctaatacctcct 301
           |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| 
Sbjct: 236 gaggcggtggagctcgtgctgttccaggtcgctgagtgctacgtctacctgatacctccc 295

                                                                       
Query: 302 aggaagacggccgcctcttacagggctgatgagtggaatgtgaacaaatgggcttgggaa 361
           |||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 296 aggaagacagccgcctcctacagggctgatgaatggaacgtcaacaagtgggcttgggaa 355

                                                                       
Query: 362 ggggcacttaaggttgtcagcaggggagaagaatgtgttatcanactggaggacaagagc 421
           ||| | || |||||||||||||  |||||||| ||  | |||| |||||| || |||| |
Sbjct: 356 gggactctcaaggttgtcagcaaaggagaagagtgcatcatcaaactggaagataagaac 415

                                                                       
Query: 422 actggtgagctgtatgctagggcatttctcagagaaggcgaaccacatccggtggaagct 481
           || || |||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct: 416 acaggggagctgtacgctagggcattcctcagagaagacgaaccacatccggtggaacct 475

                        
Query: 482 gtaattgatagca 494
           || ||||||||||
Sbjct: 476 gttattgatagca 488
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 428      gagctgtatgctagggcatttctcagagaaggcgaaccacatccggtggaagctgtaatt 487
                |||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||| |||
Sbjct: 24373052 gagctgtacgctagggcattcctcagagaagacgaaccacatccggtggaacctgttatt 24373111

                       
Query: 488      gatagca 494
                |||||||
Sbjct: 24373112 gatagca 24373118



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                               
Query: 242      gaggcggtggagctcgtgctgttccaggtcgccgagtgctacgtcta 288
                |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 24372278 gaggcggtggagctcgtgctgttccaggtcgctgagtgctacgtcta 24372324



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                            
Query: 322      cagggctgatgagtggaatgtgaacaaatgggcttgggaaggggcacttaaggttgtcag 381
                |||||||||||| ||||| || ||||| ||||||||||||||| | || |||||||||||
Sbjct: 24372868 cagggctgatgaatggaacgtcaacaagtgggcttgggaagggactctcaaggttgtcag 24372927

                            
Query: 382      caggggagaaga 393
                ||  ||||||||
Sbjct: 24372928 caaaggagaaga 24372939
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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                          
Query: 428    gagctgtatgctagggcatttctcagagaaggcgaaccacatccggtggaagctgtaatt 487
              |||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||| |||
Sbjct: 118956 gagctgtacgctagggcattcctcagagaagacgaaccacatccggtggaacctgttatt 119015

                     
Query: 488    gatagca 494
              |||||||
Sbjct: 119016 gatagca 119022



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                             
Query: 242    gaggcggtggagctcgtgctgttccaggtcgccgagtgctacgtcta 288
              |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 118182 gaggcggtggagctcgtgctgttccaggtcgctgagtgctacgtcta 118228



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                          
Query: 322    cagggctgatgagtggaatgtgaacaaatgggcttgggaaggggcacttaaggttgtcag 381
              |||||||||||| ||||| || ||||| ||||||||||||||| | || |||||||||||
Sbjct: 118772 cagggctgatgaatggaacgtcaacaagtgggcttgggaagggactctcaaggttgtcag 118831

                          
Query: 382    caggggagaaga 393
              ||  ||||||||
Sbjct: 118832 caaaggagaaga 118843
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>ref|NM_115722.2| Arabidopsis thaliana unknown protein AT3G58600 mRNA, complete cds
          Length = 1623

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 293 atacctcctaggaagacggccgcctcttacagggctgatgagtggaatgtgaacaaatgg 352
           |||||||| ||||| || || || || ||||| || ||||||||| | ||||||||||||
Sbjct: 303 atacctccaaggaaaaccgcagcttcgtacagagcagatgagtgggacgtgaacaaatgg 362

                      
Query: 353 gcttgggaagg 363
           || ||||||||
Sbjct: 363 gcatgggaagg 373
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>gb|AY086716.1| Arabidopsis thaliana clone 27 mRNA, complete sequence
          Length = 1303

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 293 atacctcctaggaagacggccgcctcttacagggctgatgagtggaatgtgaacaaatgg 352
           |||||||| ||||| || || || || ||||| || ||||||||| | ||||||||||||
Sbjct: 303 atacctccaaggaaaaccgcagcttcgtacagagcagatgagtgggacgtgaacaaatgg 362

                      
Query: 353 gcttgggaagg 363
           || ||||||||
Sbjct: 363 gcatgggaagg 373
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>gb|BT001934.1| Arabidopsis thaliana clone C105396 unknown protein (At3g58600)
           mRNA, complete cds
          Length = 940

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 293 atacctcctaggaagacggccgcctcttacagggctgatgagtggaatgtgaacaaatgg 352
           |||||||| ||||| || || || || ||||| || ||||||||| | ||||||||||||
Sbjct: 139 atacctccaaggaaaaccgcagcttcgtacagagcagatgagtgggacgtgaacaaatgg 198

                      
Query: 353 gcttgggaagg 363
           || ||||||||
Sbjct: 199 gcatgggaagg 209
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>gb|AY045986.1| Arabidopsis thaliana At3g58600 mRNA sequence
          Length = 1505

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 329 gatgagtggaatgtgaacaaatgggcttgggaagg 363
           ||||||||| | |||||||||||||| ||||||||
Sbjct: 582 gatgagtgggacgtgaacaaatgggcatgggaagg 616
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>emb|AL137082.1|ATF14P22 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22
          Length = 94239

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 329   gatgagtggaatgtgaacaaatgggcttgggaagg 363
             ||||||||| | |||||||||||||| ||||||||
Sbjct: 63315 gatgagtgggacgtgaacaaatgggcatgggaagg 63281
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>gb|AC074327.6| Homo sapiens chromosome 10 clone RP11-556E13, complete sequence
          Length = 189250

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     tctctcccctcacccccaaccc 37
              ||||||||||||||||||||||
Sbjct: 137544 tctctcccctcacccccaaccc 137565
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>gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from chromosome unknown,
             complete sequence
          Length = 188107

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    ctctcccctcacccccaaccca 38
             ||||||||||||||||||||||
Sbjct: 96888 ctctcccctcacccccaaccca 96909
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>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99727

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    cccctcacccccaacccaagga 42
             ||||||||||||||||||||||
Sbjct: 59292 cccctcacccccaacccaagga 59313
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>gb|AC091842.3| Homo sapiens chromosome 5 clone CTD-2155B8, complete sequence
          Length = 152147

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 16     tctctcccctcacccccaaccc 37
              ||||||||||||||||||||||
Sbjct: 123461 tctctcccctcacccccaaccc 123440
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>gb|AC096721.2| Homo sapiens BAC clone RP11-19C24 from 4, complete sequence
          Length = 161824

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     tctctcccctcacccccaaccc 37
              ||||||||||||||||||||||
Sbjct: 128243 tctctcccctcacccccaaccc 128264
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>gb|AC068919.4| Homo sapiens BAC clone RP11-340I19 from 2, complete sequence
          Length = 164350

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 16    tctctcccctcacccccaaccc 37
             ||||||||||||||||||||||
Sbjct: 80209 tctctcccctcacccccaaccc 80230
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>gb|AF265141.1|AF265141 Synthetic construct Hepatitis C virus type 1a isolate 18-4 mutated
           NS5A gene, partial cds
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 363 gggcacttaaggttgtcagcag 384
           ||||||||||||||||||||||
Sbjct: 431 gggcacttaaggttgtcagcag 410
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>gb|AF265140.1|AF265140 Synthetic construct Hepatitis C virus type 1a isolate 18-3 mutated
           NS5A gene, partial cds
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 363 gggcacttaaggttgtcagcag 384
           ||||||||||||||||||||||
Sbjct: 431 gggcacttaaggttgtcagcag 410
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>gb|AF265139.1|AF265139 Synthetic construct Hepatitis C virus type 1a isolate 18-1 mutated
           NS5A gene, partial cds
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 363 gggcacttaaggttgtcagcag 384
           ||||||||||||||||||||||
Sbjct: 431 gggcacttaaggttgtcagcag 410
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>gb|AY105364.1| Zea mays PCO091249 mRNA sequence
          Length = 880

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 461 gaaccacatccggtggaagctgtaat 486
           |||||||||||||||||| |||||||
Sbjct: 10  gaaccacatccggtggaacctgtaat 35
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 236     gagcccgaggcggtggagctc 256
               |||||||||||||||||||||
Sbjct: 3555416 gagcccgaggcggtggagctc 3555436
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>gb|AY714242.1| Homo sapiens interleukin 8 receptor, beta (IL8RB) gene, complete cds
          Length = 25733

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    tcccctcacccccaacccaag 40
             |||||||||||||||||||||
Sbjct: 13383 tcccctcacccccaacccaag 13403
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>gb|AC093928.2| Homo sapiens chromosome 3 clone RP11-241K3, complete sequence
          Length = 165203

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   gccgcaggcggagaccgagcc 240
             |||||||||||||||||||||
Sbjct: 57900 gccgcaggcggagaccgagcc 57920
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    cagtctctcccctcaccccca 33
             |||||||||||||||||||||
Sbjct: 13380 cagtctctcccctcaccccca 13400



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 18      tctcccctcacccccaaccc 37
               ||||||||||||||||||||
Sbjct: 2111251 tctcccctcacccccaaccc 2111232
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>gb|AC079141.7| Homo sapiens BAC clone RP11-502A23 from 4, complete sequence
          Length = 171273

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     tctctcccctcacccccaacc 36
              |||||||||||||||||||||
Sbjct: 168810 tctctcccctcacccccaacc 168830
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>ref|NM_174834.1| Bos taurus myosin, heavy polypeptide 10, non-muscle (MYH10), mRNA
          Length = 6275

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 215  gagcagccgcaggcggagaccgagc 239
            ||||||| |||||||||||||||||
Sbjct: 2746 gagcagctgcaggcggagaccgagc 2770
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>gb|AC124768.4| Homo sapiens BAC clone RP11-1188G23 from 2, complete sequence
          Length = 95291

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    tcccctcacccccaacccaag 40
             |||||||||||||||||||||
Sbjct: 72997 tcccctcacccccaacccaag 73017
to top
>gb|AC008050.6|AC008050 Homo sapiens chromosome 14 clone RP11-141I24 map 14q24.3, complete
              sequence
          Length = 176975

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     tcagtctctcccctcaccccc 32
              |||||||||||||||||||||
Sbjct: 102406 tcagtctctcccctcaccccc 102426
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>ref|XM_233477.3| PREDICTED: Rattus norvegicus similar to potassium voltage-gated
           channel KQT-like protein 4 isoform a (LOC298496), mRNA
          Length = 2498

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 220 gccgcaggcggagaccgagcccgag 244
           ||||||||||||| |||||||||||
Sbjct: 468 gccgcaggcggagcccgagcccgag 444
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 208     cggcagcgagcagccgcaggc 228
               |||||||||||||||||||||
Sbjct: 5474386 cggcagcgagcagccgcaggc 5474366
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>gb|M99412.1|HUMIL8R Human interleukin-8 receptor (IL8RB) gene, complete cds
          Length = 13089

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    tcccctcacccccaacccaag 40
             |||||||||||||||||||||
Sbjct: 12464 tcccctcacccccaacccaag 12484
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>dbj|AB022023.1| Bos taurus mRNA for nonmuscle myosin heavy chain B, complete cds
          Length = 6292

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 215  gagcagccgcaggcggagaccgagc 239
            ||||||| |||||||||||||||||
Sbjct: 2746 gagcagctgcaggcggagaccgagc 2770
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>gb|DQ213360.1| Taeniopygia guttata clone 0063P0025F03 mRNA sequence
          Length = 1013

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 244 ggcggtggagctcgtgctgttccaggtc 271
           |||||||||||||  |||||||||||||
Sbjct: 413 ggcggtggagctctcgctgttccaggtc 386
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>ref|NM_002821.3| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript
           variant PTK7-1, mRNA
          Length = 4249

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 93  agcagccgcagccggagcccgaccccgaggcg 62
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>ref|NM_152882.2| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript
           variant PTK7-4, mRNA
          Length = 4081

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 93  agcagccgcagccggagcccgaccccgaggcg 62
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>ref|NM_152881.2| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript
           variant PTK7-3, mRNA
          Length = 3859

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 93  agcagccgcagccggagcccgaccccgaggcg 62
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>ref|NM_152883.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript
           variant PTK7-5, mRNA
          Length = 4016

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 93  agcagccgcagccggagcccgaccccgaggcg 62
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>ref|NM_152880.2| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript
           variant PTK7-2, mRNA
          Length = 4129

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 93  agcagccgcagccggagcccgaccccgaggcg 62
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    ccgagcccgaggcggtggagctcg 257
              |||||||||||| |||||||||||
Sbjct: 555706 ccgagcccgaggaggtggagctcg 555729
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 230     gagaccgagcccgaggcggtggag 253
               ||||||| ||||||||||||||||
Sbjct: 1319130 gagaccgcgcccgaggcggtggag 1319153
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>ref|NM_001032578.1| Ciona intestinalis suppressor of hairless homolog (Su(H)), mRNA
          Length = 2523

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aggatccctcctcctcttca 58
           ||||||||||||||||||||
Sbjct: 505 aggatccctcctcctcttca 486
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>gb|BC002377.2| Homo sapiens PTK7 protein tyrosine kinase 7, mRNA (cDNA clone
           IMAGE:2961124), partial cds
          Length = 4044

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 51  agcagccgcagccggagcccgaccccgaggcg 20
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>gb|BC014626.2| Homo sapiens PTK7 protein tyrosine kinase 7, mRNA (cDNA clone
           IMAGE:2961124), partial cds
          Length = 4044

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 51  agcagccgcagccggagcccgaccccgaggcg 20
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>emb|AL355385.15| Human DNA sequence from clone RP11-387M24 on chromosome 6 Contains the
             5' end of a gene for a novel protein (KIAA0076 KIAA0708),
             the gene for a novel protein (CGI-22),  a novel gene, the
             PTK7 gene for protein tyrosine kinase 7, the 5' end of the
             SRF gene for serum response factor (c-fos serum response
             element-binding transcription factor) and CpG islands,
             complete sequence
          Length = 129884

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 216   agcagccgcaggcggagaccgagcccgaggcg 247
             ||||||||||| ||||| |||| |||||||||
Sbjct: 28454 agcagccgcagccggagcccgaccccgaggcg 28423
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     gtgctgttccaggtcgccga 276
               ||||||||||||||||||||
Sbjct: 3392791 gtgctgttccaggtcgccga 3392810
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>gb|AC016252.21| Homo sapiens 3 BAC RP11-461M2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164953

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     ctcccctcacccccaaccca 38
              ||||||||||||||||||||
Sbjct: 144598 ctcccctcacccccaaccca 144617
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>gb|BC071557.1| Homo sapiens PTK7 protein tyrosine kinase 7, transcript variant
           PTK7-1, mRNA (cDNA clone MGC:86962 IMAGE:30347652),
           complete cds
          Length = 4238

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 70  agcagccgcagccggagcccgaccccgaggcg 39
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>gb|AF531872.1| Homo sapiens transmembrane receptor precursor PTK7-5 mRNA, complete
           cds
          Length = 3958

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 42  agcagccgcagccggagcccgaccccgaggcg 11
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>gb|AF531871.1| Homo sapiens transmembrane receptor precursor PTK7-4 mRNA, complete
           cds
          Length = 4023

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 42  agcagccgcagccggagcccgaccccgaggcg 11
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>gb|AF531870.1| Homo sapiens transmembrane receptor precursor PTK7-3 mRNA, complete
           cds
          Length = 3801

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 42  agcagccgcagccggagcccgaccccgaggcg 11
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>gb|AF531869.1| Homo sapiens transmembrane receptor precursor PTK7-2 mRNA, complete
           cds
          Length = 4071

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 42  agcagccgcagccggagcccgaccccgaggcg 11
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>gb|AF531868.1| Homo sapiens transmembrane receptor precursor PTK7-1 mRNA, complete
           cds
          Length = 4191

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 42  agcagccgcagccggagcccgaccccgaggcg 11
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>gb|AF085173.1| Ciona intestinalis suppressor of hairless homolog mRNA, complete
           cds
          Length = 2523

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aggatccctcctcctcttca 58
           ||||||||||||||||||||
Sbjct: 505 aggatccctcctcctcttca 486
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>gb|AC079904.31| Homo sapiens 12 BAC RP11-84J24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 197964

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tctctcccctcacccccaac 35
              ||||||||||||||||||||
Sbjct: 156041 tctctcccctcacccccaac 156022
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>gb|AF447157.1|F447157S01 Homo sapiens protein tyrosine kinase-7 (PTK7) gene, exon 1
          Length = 1099

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 833 agcagccgcagccggagcccgaccccgaggcg 802
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>gb|U72144.2|U72144 Streptomyces collinus 1-cyclohexenylcarbonyl CoA reductase (chcA)
            gene, complete cds
          Length = 8763

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 228  cggagaccgagcccgaggcggtgg 251
            ||||||||||||||||||| ||||
Sbjct: 1328 cggagaccgagcccgaggccgtgg 1351
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>gb|AC162311.7| Mus musculus 6 BAC RP23-81K19 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 266441

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   ttgtcagcaggggagaagaa 394
             ||||||||||||||||||||
Sbjct: 87936 ttgtcagcaggggagaagaa 87917
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>gb|U40271.2|HSU40271 Homo sapiens transmembrane receptor precursor (PTK7) mRNA, complete
           cds
          Length = 4191

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 216 agcagccgcaggcggagaccgagcccgaggcg 247
           ||||||||||| ||||| |||| |||||||||
Sbjct: 42  agcagccgcagccggagcccgaccccgaggcg 11
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>dbj|AK037327.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130007A13 product:unclassifiable, full
            insert sequence
          Length = 2819

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   tcccctcacccccaacccaa 39
            ||||||||||||||||||||
Sbjct: 2770 tcccctcacccccaacccaa 2751
to top
>gb|AC084759.2|AC084759 Homo sapiens chromosome 15 clone RP11-643A5 map 15q21.3, complete
             sequence
          Length = 173921

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tctctcccctcacccccaac 35
             ||||||||||||||||||||
Sbjct: 29059 tctctcccctcacccccaac 29078
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>dbj|AB210713.1| Ciona intestinalis Ci-Su(H)/RBP-J mRNA, complete cds, clone:
           cieg048d16
          Length = 2546

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aggatccctcctcctcttca 58
           ||||||||||||||||||||
Sbjct: 527 aggatccctcctcctcttca 508
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>gb|AC007254.3| Homo sapiens BAC clone RP11-509C20 from 2, complete sequence
          Length = 136417

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ctctcccctcacccccaacc 36
             ||||||||||||||||||||
Sbjct: 62277 ctctcccctcacccccaacc 62258
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>gb|AF163865.1|AF163865 Mus musculus alpha-synuclein (Snca) gene, complete cds
          Length = 118777

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    ttgtcagcaggggagaagaa 394
              ||||||||||||||||||||
Sbjct: 106144 ttgtcagcaggggagaagaa 106163
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>gb|AC013408.7| Homo sapiens BAC clone RP11-469G18 from 2, complete sequence
          Length = 151841

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tctctcccctcacccccaac 35
             ||||||||||||||||||||
Sbjct: 69066 tctctcccctcacccccaac 69047
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 235    cgagcccgaggcggtggagctcgtgctg 262
              |||| ||||||||| |||||||||||||
Sbjct: 434583 cgagaccgaggcggcggagctcgtgctg 434610
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>dbj|AK173387.1| Ciona intestinalis cDNA, clone:cieg052m15, full insert sequence
          Length = 1214

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aggatccctcctcctcttca 58
           ||||||||||||||||||||
Sbjct: 532 aggatccctcctcctcttca 513
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>gb|AC156553.17| Mus musculus chromosome 8, clone RP23-106I21, complete sequence
          Length = 211915

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tctctcccctcacccccaac 35
             ||||||||||||||||||||
Sbjct: 68862 tctctcccctcacccccaac 68881
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>gb|AC154010.3| Mus musculus 6 BAC RP24-493P16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 213098

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    ttgtcagcaggggagaagaa 394
              ||||||||||||||||||||
Sbjct: 183045 ttgtcagcaggggagaagaa 183026
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>emb|AL929067.8| Mouse DNA sequence from clone RP24-69A20 on chromosome 11, complete
             sequence
          Length = 87925

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 101   ctatcccaccggaccccttccaaa 124
             |||||||||| |||||||||||||
Sbjct: 27074 ctatcccacctgaccccttccaaa 27051
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>emb|AL683877.10| Mouse DNA sequence from clone RP23-120P2 on chromosome 4, complete
             sequence
          Length = 184168

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   gggagaagaatgtgttatca 404
             ||||||||||||||||||||
Sbjct: 43679 gggagaagaatgtgttatca 43698
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>emb|AL772187.6| Mouse DNA sequence from clone RP23-38K18 on chromosome 4, complete
             sequence
          Length = 230409

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tcccctcacccccaacccaa 39
             ||||||||||||||||||||
Sbjct: 72852 tcccctcacccccaacccaa 72833


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,666,425
Number of Sequences: 3902068
Number of extensions: 3666425
Number of successful extensions: 81829
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81410
Number of HSP's gapped (non-prelim): 419
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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