ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart06f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478718.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1599 Score = 432 bits (218), Expect = e-118 Identities = 361/408 (88%), Gaps = 3/408 (0%) Strand = Plus / Plus Query: 111 gccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgc 170 |||||| ||||| ||||| ||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 51 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 110 Query: 171 cctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggt 230 | |||||| ||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct: 111 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 170 Query: 231 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccg---gcgccgacgc 287 ||||||||| |||||||| ||||||||||| || ||||||||||||| |||||||| | Sbjct: 171 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 230 Query: 288 gtcctgctcggctgccacggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtggga 347 |||||||||| | | | |||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 231 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 290 Query: 348 ccgcccggccgtgacgtcggtgatctcggagtggtcgctcaagtgcgccggcccggcgct 407 ||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct: 291 ccgcccggccgagacgtcggtggtctccgagtgggcgctcaagtgcgccggcccggcgct 350 Query: 408 cgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcac 467 |||||| |||||||| || |||||||||||||| |||||||||||||| || || || || Sbjct: 351 cgtctcgctcccggcgtcgtcgttcttcgccggatgcctcgccggcgggtttctgctgac 410 Query: 468 gacgctcgccgactcgctcctgggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct: 411 gacgctcgccgactccctcctcggccgcagaaagatgctcctggtgtc 458
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 432 bits (218), Expect = e-118 Identities = 361/408 (88%), Gaps = 3/408 (0%) Strand = Plus / Plus Query: 111 gccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgc 170 |||||| ||||| ||||| ||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 22373398 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 22373457 Query: 171 cctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggt 230 | |||||| ||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct: 22373458 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 22373517 Query: 231 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccg---gcgccgacgc 287 ||||||||| |||||||| ||||||||||| || ||||||||||||| |||||||| | Sbjct: 22373518 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 22373577 Query: 288 gtcctgctcggctgccacggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtggga 347 |||||||||| | | | |||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 22373578 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 22373637 Query: 348 ccgcccggccgtgacgtcggtgatctcggagtggtcgctcaagtgcgccggcccggcgct 407 ||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct: 22373638 ccgcccggccgagacgtcggtggtctccgagtgggcgctcaagtgcgccggcccggcgct 22373697 Query: 408 cgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcac 467 |||||| |||||||| || |||||||||||||| |||||||||||||| || || || || Sbjct: 22373698 cgtctcgctcccggcgtcgtcgttcttcgccggatgcctcgccggcgggtttctgctgac 22373757 Query: 468 gacgctcgccgactcgctcctgggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct: 22373758 gacgctcgccgactccctcctcggccgcagaaagatgctcctggtgtc 22373805 Score = 410 bits (207), Expect = e-111 Identities = 391/452 (86%), Gaps = 9/452 (1%) Strand = Plus / Minus Query: 64 atggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggca 123 ||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 22404950 atggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggcg 22404891 Query: 124 ccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 183 ||||| ||||| ||| |||||||||| ||||| ||||||||||||||| |||||| || Sbjct: 22404890 ccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgccgggcagctgttc 22404831 Query: 184 aaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggtg 243 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 22404830 aaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctccgtg 22404771 Query: 244 ttcaccgacgccgagcctcggtggcactgca---ccggcgccgacgcgtcctgctcggct 300 ||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| | Sbjct: 22404770 ttcacggacgccgagccgcgctggcactgcaccgccggcgccgacccgtcctgctcgccg 22404711 Query: 301 gccacggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtg 360 | | |||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 22404710 ggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtgggaccgcccggccgag 22404651 Query: 361 acgtcggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctcc 414 ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||| Sbjct: 22404650 acgtcggtggtgtcggagtgggcgctcaagtgcggcggcggcggcccggcgctcgtctcc 22404591 Query: 415 ctcccggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcacgacgctc 474 |||||||| || ||||||||||||||| ||||||||| |||||||| |||||||||||| Sbjct: 22404590 ctcccggcgtcgtcgttcttcgccggcaacctcgccgggggcttcctgctcacgacgctc 22404531 Query: 475 gccgactcgctcctgggccgcaggaagatgct 506 |||||| | | ||||| |||||||||||||| Sbjct: 22404530 gccgacactcatctgggacgcaggaagatgct 22404499 Score = 208 bits (105), Expect = 1e-50 Identities = 182/208 (87%), Gaps = 6/208 (2%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| ||| |||||||||||||| ||||| |||||| ||||||||||||||||| ||||| Sbjct: 22421306 cggcttcggcgtgcgcgctcccgcccggcacgtgggagtgggaccgcccggccgagacgt 22421365 Query: 365 cggtgatctcggagtggtcgctcaagtgcgccggc------ccggcgctcgtctccctcc 418 ||||| | ||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct: 22421366 cggtggtgtcggagtgggcgctcaagtgcggcggcggcggcccggcgctcgtctccctcc 22421425 Query: 419 cggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccg 478 |||| || ||||||||||||||| ||||||||| |||||||| |||||||||||||||| Sbjct: 22421426 cggcgtcgtcgttcttcgccggcaacctcgccgggggcttcctgctcacgacgctcgccg 22421485 Query: 479 actcgctcctgggccgcaggaagatgct 506 || | |||||||| || ||||||||||| Sbjct: 22421486 acactctcctgggacgaaggaagatgct 22421513 Score = 178 bits (90), Expect = 1e-41 Identities = 186/218 (85%) Strand = Plus / Plus Query: 63 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 122 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 22421037 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 22421096 Query: 123 accgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 182 || ||| ||||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 22421097 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 22421156 Query: 183 caaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggt 242 || |||| |||||||||||||||| | ||| ||||| ||||||||||||||||| || || Sbjct: 22421157 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 22421216 Query: 243 gttcaccgacgccgagcctcggtggcactgcaccggcg 280 |||||| ||||| ||||| |||||||||||||||| Sbjct: 22421217 gttcacggacgcggagcccacatggcactgcaccggcg 22421254
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 432 bits (218), Expect = e-118 Identities = 361/408 (88%), Gaps = 3/408 (0%) Strand = Plus / Plus Query: 111 gccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgc 170 |||||| ||||| ||||| ||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 178644 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 178703 Query: 171 cctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggt 230 | |||||| ||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct: 178704 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 178763 Query: 231 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccg---gcgccgacgc 287 ||||||||| |||||||| ||||||||||| || ||||||||||||| |||||||| | Sbjct: 178764 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 178823 Query: 288 gtcctgctcggctgccacggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtggga 347 |||||||||| | | | |||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 178824 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 178883 Query: 348 ccgcccggccgtgacgtcggtgatctcggagtggtcgctcaagtgcgccggcccggcgct 407 ||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct: 178884 ccgcccggccgagacgtcggtggtctccgagtgggcgctcaagtgcgccggcccggcgct 178943 Query: 408 cgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcac 467 |||||| |||||||| || |||||||||||||| |||||||||||||| || || || || Sbjct: 178944 cgtctcgctcccggcgtcgtcgttcttcgccggatgcctcgccggcgggtttctgctgac 179003 Query: 468 gacgctcgccgactcgctcctgggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct: 179004 gacgctcgccgactccctcctcggccgcagaaagatgctcctggtgtc 179051
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 432 bits (218), Expect = e-118 Identities = 361/408 (88%), Gaps = 3/408 (0%) Strand = Plus / Plus Query: 111 gccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgc 170 |||||| ||||| ||||| ||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 34465 gccggcgaaggcgccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgc 34524 Query: 171 cctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggt 230 | |||||| ||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct: 34525 cgggcagctgttcaaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggt 34584 Query: 231 gttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccg---gcgccgacgc 287 ||||||||| |||||||| ||||||||||| || ||||||||||||| |||||||| | Sbjct: 34585 gttcatctccgtgttcacggacgccgagccgcgctggcactgcaccgcaggcgccgaccc 34644 Query: 288 gtcctgctcggctgccacggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtggga 347 |||||||||| | | | |||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 34645 gtcctgctcgccgggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtggga 34704 Query: 348 ccgcccggccgtgacgtcggtgatctcggagtggtcgctcaagtgcgccggcccggcgct 407 ||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct: 34705 ccgcccggccgagacgtcggtggtctccgagtgggcgctcaagtgcgccggcccggcgct 34764 Query: 408 cgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcac 467 |||||| |||||||| || |||||||||||||| |||||||||||||| || || || || Sbjct: 34765 cgtctcgctcccggcgtcgtcgttcttcgccggatgcctcgccggcgggtttctgctgac 34824 Query: 468 gacgctcgccgactcgctcctgggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct: 34825 gacgctcgccgactccctcctcggccgcagaaagatgctcctggtgtc 34872 Score = 410 bits (207), Expect = e-111 Identities = 391/452 (86%), Gaps = 9/452 (1%) Strand = Plus / Minus Query: 64 atggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggca 123 ||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 66017 atggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggcg 65958 Query: 124 ccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 183 ||||| ||||| ||| |||||||||| ||||| ||||||||||||||| |||||| || Sbjct: 65957 ccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgccgggcagctgttc 65898 Query: 184 aaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggtg 243 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 65897 aaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctccgtg 65838 Query: 244 ttcaccgacgccgagcctcggtggcactgca---ccggcgccgacgcgtcctgctcggct 300 ||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| | Sbjct: 65837 ttcacggacgccgagccgcgctggcactgcaccgccggcgccgacccgtcctgctcgccg 65778 Query: 301 gccacggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtg 360 | | |||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 65777 ggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtgggaccgcccggccgag 65718 Query: 361 acgtcggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctcc 414 ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||| Sbjct: 65717 acgtcggtggtgtcggagtgggcgctcaagtgcggcggcggcggcccggcgctcgtctcc 65658 Query: 415 ctcccggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcacgacgctc 474 |||||||| || ||||||||||||||| ||||||||| |||||||| |||||||||||| Sbjct: 65657 ctcccggcgtcgtcgttcttcgccggcaacctcgccgggggcttcctgctcacgacgctc 65598 Query: 475 gccgactcgctcctgggccgcaggaagatgct 506 |||||| | | ||||| |||||||||||||| Sbjct: 65597 gccgacactcatctgggacgcaggaagatgct 65566 Score = 208 bits (105), Expect = 1e-50 Identities = 182/208 (87%), Gaps = 6/208 (2%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| ||| |||||||||||||| ||||| |||||| ||||||||||||||||| ||||| Sbjct: 82373 cggcttcggcgtgcgcgctcccgcccggcacgtgggagtgggaccgcccggccgagacgt 82432 Query: 365 cggtgatctcggagtggtcgctcaagtgcgccggc------ccggcgctcgtctccctcc 418 ||||| | ||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct: 82433 cggtggtgtcggagtgggcgctcaagtgcggcggcggcggcccggcgctcgtctccctcc 82492 Query: 419 cggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccg 478 |||| || ||||||||||||||| ||||||||| |||||||| |||||||||||||||| Sbjct: 82493 cggcgtcgtcgttcttcgccggcaacctcgccgggggcttcctgctcacgacgctcgccg 82552 Query: 479 actcgctcctgggccgcaggaagatgct 506 || | |||||||| || ||||||||||| Sbjct: 82553 acactctcctgggacgaaggaagatgct 82580 Score = 178 bits (90), Expect = 1e-41 Identities = 186/218 (85%) Strand = Plus / Plus Query: 63 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 122 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 82104 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 82163 Query: 123 accgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 182 || ||| ||||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 82164 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 82223 Query: 183 caaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggt 242 || |||| |||||||||||||||| | ||| ||||| ||||||||||||||||| || || Sbjct: 82224 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 82283 Query: 243 gttcaccgacgccgagcctcggtggcactgcaccggcg 280 |||||| ||||| ||||| |||||||||||||||| Sbjct: 82284 gttcacggacgcggagcccacatggcactgcaccggcg 82321
>ref|XM_478722.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 Score = 410 bits (207), Expect = e-111 Identities = 391/452 (86%), Gaps = 9/452 (1%) Strand = Plus / Plus Query: 64 atggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggca 123 ||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 1 atggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggcg 60 Query: 124 ccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 183 ||||| ||||| ||| |||||||||| ||||| ||||||||||||||| |||||| || Sbjct: 61 ccgtccatcgacgacgccatcgagacctacatcggcgccaccggcgccgggcagctgttc 120 Query: 184 aaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggtg 243 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 121 aaggcgatcctgctggccttcgcgtgggccttcgacgcgcagcaggtgttcatctccgtg 180 Query: 244 ttcaccgacgccgagcctcggtggcactgca---ccggcgccgacgcgtcctgctcggct 300 ||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| | Sbjct: 181 ttcacggacgccgagccgcgctggcactgcaccgccggcgccgacccgtcctgctcgccg 240 Query: 301 gccacggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtg 360 | | |||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 241 ggcgcggcctcgccgtgcgcgctcccgcccggcgcgtgggcgtgggaccgcccggccgag 300 Query: 361 acgtcggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctcc 414 ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||| Sbjct: 301 acgtcggtggtgtcggagtgggcgctcaagtgcggcggcggcggcccggcgctcgtctcc 360 Query: 415 ctcccggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcacgacgctc 474 |||||||| || ||||||||||||||| ||||||||| |||||||| |||||||||||| Sbjct: 361 ctcccggcgtcgtcgttcttcgccggcaacctcgccgggggcttcctgctcacgacgctc 420 Query: 475 gccgactcgctcctgggccgcaggaagatgct 506 |||||| | | ||||| |||||||||||||| Sbjct: 421 gccgacactcatctgggacgcaggaagatgct 452
>ref|XM_478725.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1807 Score = 208 bits (105), Expect = 1e-50 Identities = 182/208 (87%), Gaps = 6/208 (2%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| ||| |||||||||||||| ||||| |||||| ||||||||||||||||| ||||| Sbjct: 327 cggcttcggcgtgcgcgctcccgcccggcacgtgggagtgggaccgcccggccgagacgt 386 Query: 365 cggtgatctcggagtggtcgctcaagtgcgccggc------ccggcgctcgtctccctcc 418 ||||| | ||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct: 387 cggtggtgtcggagtgggcgctcaagtgcggcggcggcggcccggcgctcgtctccctcc 446 Query: 419 cggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccg 478 |||| || ||||||||||||||| ||||||||| |||||||| |||||||||||||||| Sbjct: 447 cggcgtcgtcgttcttcgccggcaacctcgccgggggcttcctgctcacgacgctcgccg 506 Query: 479 actcgctcctgggccgcaggaagatgct 506 || | |||||||| || ||||||||||| Sbjct: 507 acactctcctgggacgaaggaagatgct 534 Score = 178 bits (90), Expect = 1e-41 Identities = 186/218 (85%) Strand = Plus / Plus Query: 63 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 122 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 58 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 117 Query: 123 accgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 182 || ||| ||||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 118 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 177 Query: 183 caaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggt 242 || |||| |||||||||||||||| | ||| ||||| ||||||||||||||||| || || Sbjct: 178 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 237 Query: 243 gttcaccgacgccgagcctcggtggcactgcaccggcg 280 |||||| ||||| ||||| |||||||||||||||| Sbjct: 238 gttcacggacgcggagcccacatggcactgcaccggcg 275
>dbj|AK072020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104C21, full insert sequence Length = 1807 Score = 200 bits (101), Expect = 3e-48 Identities = 181/208 (87%), Gaps = 6/208 (2%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| ||| |||||||||||||| ||||| |||||| ||||||||||||||||| ||||| Sbjct: 327 cggcttcggcgtgcgcgctcccgcccggcacgtgggagtgggaccgcccggccgagacgt 386 Query: 365 cggtgatctcggagtggtcgctcaagtgcgccggc------ccggcgctcgtctccctcc 418 ||||| | ||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct: 387 cggtggtgtcggagtgggcgctcaagtgcggcggcggcggcccggcgctcgtctccctcc 446 Query: 419 cggcatcctcgttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccg 478 |||| || ||||||||||||||| ||||||||| |||||| | |||||||||||||||| Sbjct: 447 cggcgtcgtcgttcttcgccggcaacctcgccgggggcttcatgctcacgacgctcgccg 506 Query: 479 actcgctcctgggccgcaggaagatgct 506 || | |||||||| || ||||||||||| Sbjct: 507 acactctcctgggacgaaggaagatgct 534 Score = 178 bits (90), Expect = 1e-41 Identities = 186/218 (85%) Strand = Plus / Plus Query: 63 aatggctgacacggccgccgccccgctcctgacaagccacaaaacaaggccggccaaggc 122 |||||| ||| ||||| || ||||||| ||||| ||||| || ||| |||||||||||| Sbjct: 58 aatggccgacgcggccaccaccccgctgctgacgagccatgaagcaaagccggccaaggc 117 Query: 123 accgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcct 182 || ||| ||||| ||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 118 actgtccatcgacgacgccatcgagacgtacatcggcgccaccggcgcccgccagctgct 177 Query: 183 caaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggt 242 || |||| |||||||||||||||| | ||| ||||| ||||||||||||||||| || || Sbjct: 178 cacggccatgttgctggccttcgcttgggctttcgaggcgcagcaggtgttcatgtccgt 237 Query: 243 gttcaccgacgccgagcctcggtggcactgcaccggcg 280 |||||| ||||| ||||| |||||||||||||||| Sbjct: 238 gttcacggacgcggagcccacatggcactgcaccggcg 275
>ref|NM_183863.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1626 Score = 198 bits (100), Expect = 1e-47 Identities = 180/206 (87%), Gaps = 3/206 (1%) Strand = Plus / Plus Query: 310 tcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgtcggtg 369 |||||||||||||||||| | ||| |||||| ||||||||||||||||| |||||||||| Sbjct: 277 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccgagacgtcggtg 336 Query: 370 atctcggagtggtcgctcaagtgcgccggcccggcgctcgtctccctcccggcatcctcg 429 | ||||| ||| | ||||| |||| ||||||||||||||||||||||||| || ||| Sbjct: 337 gtgtcggactgggcactcaactgcg---gcccggcgctcgtctccctcccggcgtcgtcg 393 Query: 430 ttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccgactcgctcctg 489 |||||||||||| |||||||||||||||||| ||| | |||||||||||| | | |||| Sbjct: 394 ttcttcgccggcaacctcgccggcggcttcctactcgcaacgctcgccgacactcacctg 453 Query: 490 ggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||||| ||| |||| Sbjct: 454 ggccgcaggaagatgctcctcctgtc 479 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 124 ccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 183 ||||| ||||| ||| ||||||| ||||||| |||||||||||||||| ||||| ||| Sbjct: 52 ccgtccatcgacgacgtcatcgaggcgtacatcggcgccaccggcgcccgccagcttctc 111 Query: 184 aaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggtg 243 |||||| || ||||||||||||| | ||| ||||||||||||||||||||||| || ||| Sbjct: 112 aaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtg 171 Query: 244 ttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| ||||| ||||| | |||||||||||||||| Sbjct: 172 ttcacggacgcggagccgccatggcactgcaccggcg 208
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 198 bits (100), Expect = 1e-47 Identities = 180/206 (87%), Gaps = 3/206 (1%) Strand = Plus / Plus Query: 310 tcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgtcggtg 369 |||||||||||||||||| | ||| |||||| ||||||||||||||||| |||||||||| Sbjct: 12741673 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccgagacgtcggtg 12741732 Query: 370 atctcggagtggtcgctcaagtgcgccggcccggcgctcgtctccctcccggcatcctcg 429 | ||||| ||| | ||||| |||| ||||||||||||||||||||||||| || ||| Sbjct: 12741733 gtgtcggactgggcactcaactgcg---gcccggcgctcgtctccctcccggcgtcgtcg 12741789 Query: 430 ttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccgactcgctcctg 489 |||||||||||| |||||||||||||||||| ||| | |||||||||||| | | |||| Sbjct: 12741790 ttcttcgccggcaacctcgccggcggcttcctactcgcaacgctcgccgacactcacctg 12741849 Query: 490 ggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||||| ||| |||| Sbjct: 12741850 ggccgcaggaagatgctcctcctgtc 12741875 Score = 153 bits (77), Expect = 7e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 112 ccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgcc 171 ||||||||||||||||| ||| | ||| |||||||| |||||| ||||||||||||||| Sbjct: 12739865 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 12739924 Query: 172 ctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtg 231 | || || ||||||||| || ||||||||||||| | ||| |||||||||||||||||| Sbjct: 12739925 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 12739984 Query: 232 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 12739985 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 12740033 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 124 ccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 183 ||||| ||||| ||| ||||||| ||||||| |||||||||||||||| ||||| ||| Sbjct: 12741448 ccgtccatcgacgacgtcatcgaggcgtacatcggcgccaccggcgcccgccagcttctc 12741507 Query: 184 aaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggtg 243 |||||| || ||||||||||||| | ||| ||||||||||||||||||||||| || ||| Sbjct: 12741508 aaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtg 12741567 Query: 244 ttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| ||||| ||||| | |||||||||||||||| Sbjct: 12741568 ttcacggacgcggagccgccatggcactgcaccggcg 12741604 Score = 93.7 bits (47), Expect = 6e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 396 cggcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcgg 455 ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| || | Sbjct: 5386039 cggcccggcgctcatctccctcccggcggcgtcgttcttcgccggcaacctcgctgggag 5386098 Query: 456 cttcctcctcacgacgctcgccgactcgctcctgggccgcaggaagatgct 506 |||||| |||||||||||||||||| | | ||||| || ||||||||||| Sbjct: 5386099 cttcctgctcacgacgctcgccgacactcatctgggacgaaggaagatgct 5386149 Score = 91.7 bits (46), Expect = 2e-15 Identities = 114/137 (83%), Gaps = 6/137 (4%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||| Sbjct: 12740097 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggccaagacgt 12740156 Query: 365 cggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctccctcc 418 ||||| | ||||| ||| ||||||| | ||| |||||| |||||||||||||||| Sbjct: 12740157 cggtggtgtcggactgggcgctcaactgcagcggcggcggcccagcgctcgtctccctcc 12740216 Query: 419 cggcatcctcgttcttc 435 |||| || ||||||||| Sbjct: 12740217 cggcgtcgtcgttcttc 12740233 Score = 89.7 bits (45), Expect = 9e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 398 gcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcggct 457 ||||||||||||||||||||||||| || ||||||||||| | | ||||| ||| |||| Sbjct: 35836570 gcccggcgctcgtctccctcccggcgtcgtcgttcttcgctgacaacctcgtcggaggct 35836511 Query: 458 tcctcctcacgacgctcgccgactcgctcctgggccgcaggaagatgct 506 | || |||||||||||||||||| | | ||||| || ||||||||||| Sbjct: 35836510 ttctactcacgacgctcgccgacactcatctgggacgaaggaagatgct 35836462
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 198 bits (100), Expect = 1e-47 Identities = 180/206 (87%), Gaps = 3/206 (1%) Strand = Plus / Plus Query: 310 tcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgtcggtg 369 |||||||||||||||||| | ||| |||||| ||||||||||||||||| |||||||||| Sbjct: 22072 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccgagacgtcggtg 22131 Query: 370 atctcggagtggtcgctcaagtgcgccggcccggcgctcgtctccctcccggcatcctcg 429 | ||||| ||| | ||||| |||| ||||||||||||||||||||||||| || ||| Sbjct: 22132 gtgtcggactgggcactcaactgcg---gcccggcgctcgtctccctcccggcgtcgtcg 22188 Query: 430 ttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccgactcgctcctg 489 |||||||||||| |||||||||||||||||| ||| | |||||||||||| | | |||| Sbjct: 22189 ttcttcgccggcaacctcgccggcggcttcctactcgcaacgctcgccgacactcacctg 22248 Query: 490 ggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||||| ||| |||| Sbjct: 22249 ggccgcaggaagatgctcctcctgtc 22274 Score = 153 bits (77), Expect = 7e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 112 ccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgcc 171 ||||||||||||||||| ||| | ||| |||||||| |||||| ||||||||||||||| Sbjct: 20264 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 20323 Query: 172 ctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtg 231 | || || ||||||||| || ||||||||||||| | ||| |||||||||||||||||| Sbjct: 20324 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 20383 Query: 232 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 20384 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 20432 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 124 ccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 183 ||||| ||||| ||| ||||||| ||||||| |||||||||||||||| ||||| ||| Sbjct: 21847 ccgtccatcgacgacgtcatcgaggcgtacatcggcgccaccggcgcccgccagcttctc 21906 Query: 184 aaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggtg 243 |||||| || ||||||||||||| | ||| ||||||||||||||||||||||| || ||| Sbjct: 21907 aaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtg 21966 Query: 244 ttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| ||||| ||||| | |||||||||||||||| Sbjct: 21967 ttcacggacgcggagccgccatggcactgcaccggcg 22003 Score = 91.7 bits (46), Expect = 2e-15 Identities = 114/137 (83%), Gaps = 6/137 (4%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||| Sbjct: 20496 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggccaagacgt 20555 Query: 365 cggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctccctcc 418 ||||| | ||||| ||| ||||||| | ||| |||||| |||||||||||||||| Sbjct: 20556 cggtggtgtcggactgggcgctcaactgcagcggcggcggcccagcgctcgtctccctcc 20615 Query: 419 cggcatcctcgttcttc 435 |||| || ||||||||| Sbjct: 20616 cggcgtcgtcgttcttc 20632
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 198 bits (100), Expect = 1e-47 Identities = 180/206 (87%), Gaps = 3/206 (1%) Strand = Plus / Plus Query: 310 tcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgtcggtg 369 |||||||||||||||||| | ||| |||||| ||||||||||||||||| |||||||||| Sbjct: 108702 tcgccgtgcgcgctcccgcctggcacgtgggagtgggaccgcccggccgagacgtcggtg 108761 Query: 370 atctcggagtggtcgctcaagtgcgccggcccggcgctcgtctccctcccggcatcctcg 429 | ||||| ||| | ||||| |||| ||||||||||||||||||||||||| || ||| Sbjct: 108762 gtgtcggactgggcactcaactgcg---gcccggcgctcgtctccctcccggcgtcgtcg 108818 Query: 430 ttcttcgccggctgcctcgccggcggcttcctcctcacgacgctcgccgactcgctcctg 489 |||||||||||| |||||||||||||||||| ||| | |||||||||||| | | |||| Sbjct: 108819 ttcttcgccggcaacctcgccggcggcttcctactcgcaacgctcgccgacactcacctg 108878 Query: 490 ggccgcaggaagatgctgctcgtgtc 515 ||||||||||||||||| ||| |||| Sbjct: 108879 ggccgcaggaagatgctcctcctgtc 108904 Score = 153 bits (77), Expect = 7e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 112 ccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgcc 171 ||||||||||||||||| ||| | ||| |||||||| |||||| ||||||||||||||| Sbjct: 106894 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 106953 Query: 172 ctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtg 231 | || || ||||||||| || ||||||||||||| | ||| |||||||||||||||||| Sbjct: 106954 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 107013 Query: 232 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 107014 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 107062 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Plus Query: 124 ccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgccctgcagctcctc 183 ||||| ||||| ||| ||||||| ||||||| |||||||||||||||| ||||| ||| Sbjct: 108477 ccgtccatcgacgacgtcatcgaggcgtacatcggcgccaccggcgcccgccagcttctc 108536 Query: 184 aaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtgttcatctcggtg 243 |||||| || ||||||||||||| | ||| ||||||||||||||||||||||| || ||| Sbjct: 108537 aaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtgttcatgtccgtg 108596 Query: 244 ttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| ||||| ||||| | |||||||||||||||| Sbjct: 108597 ttcacggacgcggagccgccatggcactgcaccggcg 108633 Score = 91.7 bits (46), Expect = 2e-15 Identities = 114/137 (83%), Gaps = 6/137 (4%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||| Sbjct: 107126 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggccaagacgt 107185 Query: 365 cggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctccctcc 418 ||||| | ||||| ||| ||||||| | ||| |||||| |||||||||||||||| Sbjct: 107186 cggtggtgtcggactgggcgctcaactgcagcggcggcggcccagcgctcgtctccctcc 107245 Query: 419 cggcatcctcgttcttc 435 |||| || ||||||||| Sbjct: 107246 cggcgtcgtcgttcttc 107262
>ref|NM_183862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 714 Score = 153 bits (77), Expect = 7e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 112 ccggccaaggcaccgtcgatcgatgacaccatcgagacgtacatgggcgccaccggcgcc 171 ||||||||||||||||| ||| | ||| |||||||| |||||| ||||||||||||||| Sbjct: 112 ccggccaaggcaccgtctatccacgacgccatcgaggtgtacatcggcgccaccggcgcc 171 Query: 172 ctgcagctcctcaaggccgtgttgctggccttcgcgtaggccttcgacgcgcagcaggtg 231 | || || ||||||||| || ||||||||||||| | ||| |||||||||||||||||| Sbjct: 172 cgccaacttctcaaggccatgctgctggccttcgcttgggctttcgacgcgcagcaggtg 231 Query: 232 ttcatctcggtgttcaccgacgccgagcctcggtggcactgcaccggcg 280 ||||| || |||||||| ||||| ||||| | |||||||||||||||| Sbjct: 232 ttcatgtccgtgttcacggacgcggagccgccatggcactgcaccggcg 280 Score = 91.7 bits (46), Expect = 2e-15 Identities = 114/137 (83%), Gaps = 6/137 (4%) Strand = Plus / Plus Query: 305 cggcatcgccgtgcgcgctcccgtccggcgcgtgggcgtgggaccgcccggccgtgacgt 364 |||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||| Sbjct: 344 cggcttcgccgtgcgcgctcccgctcggcacgtgggagtgggaccgcctggccaagacgt 403 Query: 365 cggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctccctcc 418 ||||| | ||||| ||| ||||||| | ||| |||||| |||||||||||||||| Sbjct: 404 cggtggtgtcggactgggcgctcaactgcagcggcggcggcccagcgctcgtctccctcc 463 Query: 419 cggcatcctcgttcttc 435 |||| || ||||||||| Sbjct: 464 cggcgtcgtcgttcttc 480
>gb|AC136524.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0474A01, complete sequence Length = 140077 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 396 cggcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcgg 455 |||||||| |||||||||||||||||| || ||||||||||||||| |||||||| | Sbjct: 49694 cggcccggtgctcgtctccctcccggcgtcgtcgttcttcgccggcaacctcgccgaggt 49753 Query: 456 cttcctcctcacgacgctcgccga 479 |||||| ||||||||||||||||| Sbjct: 49754 cttccttctcacgacgctcgccga 49777
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 396 cggcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcgg 455 |||||||| |||||||||||||||||| || ||||||||||||||| |||||||| | Sbjct: 14102139 cggcccggtgctcgtctccctcccggcgtcgtcgttcttcgccggcaacctcgccgaggt 14102198 Query: 456 cttcctcctcacgacgctcgccga 479 |||||| ||||||||||||||||| Sbjct: 14102199 cttccttctcacgacgctcgccga 14102222
>ref|NM_188270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1782 Score = 93.7 bits (47), Expect = 6e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 396 cggcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcgg 455 ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| || | Sbjct: 846 cggcccggcgctcatctccctcccggcggcgtcgttcttcgccggcaacctcgctgggag 905 Query: 456 cttcctcctcacgacgctcgccgactcgctcctgggccgcaggaagatgct 506 |||||| |||||||||||||||||| | | ||||| || ||||||||||| Sbjct: 906 cttcctgctcacgacgctcgccgacactcatctgggacgaaggaagatgct 956
>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1046G12 Length = 163533 Score = 93.7 bits (47), Expect = 6e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 396 cggcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcgg 455 ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| || | Sbjct: 137383 cggcccggcgctcatctccctcccggcggcgtcgttcttcgccggcaacctcgctgggag 137442 Query: 456 cttcctcctcacgacgctcgccgactcgctcctgggccgcaggaagatgct 506 |||||| |||||||||||||||||| | | ||||| || ||||||||||| Sbjct: 137443 cttcctgctcacgacgctcgccgacactcatctgggacgaaggaagatgct 137493
>ref|NM_190486.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1230 Score = 89.7 bits (45), Expect = 9e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 398 gcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcggct 457 ||||||||||||||||||||||||| || ||||||||||| | | ||||| ||| |||| Sbjct: 713 gcccggcgctcgtctccctcccggcgtcgtcgttcttcgctgacaacctcgtcggaggct 772 Query: 458 tcctcctcacgacgctcgccgactcgctcctgggccgcaggaagatgct 506 | || |||||||||||||||||| | | ||||| || ||||||||||| Sbjct: 773 ttctactcacgacgctcgccgacactcatctgggacgaaggaagatgct 821
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 89.7 bits (45), Expect = 9e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 398 gcccggcgctcgtctccctcccggcatcctcgttcttcgccggctgcctcgccggcggct 457 ||||||||||||||||||||||||| || ||||||||||| | | ||||| ||| |||| Sbjct: 101028 gcccggcgctcgtctccctcccggcgtcgtcgttcttcgctgacaacctcgtcggaggct 100969 Query: 458 tcctcctcacgacgctcgccgactcgctcctgggccgcaggaagatgct 506 | || |||||||||||||||||| | | ||||| || ||||||||||| Sbjct: 100968 ttctactcacgacgctcgccgacactcatctgggacgaaggaagatgct 100920
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.12 Identities = 55/66 (83%), Gaps = 6/66 (9%) Strand = Plus / Plus Query: 360 gacgtcggtgatctcggagtggtcgctcaagtg------cgccggcccggcgctcgtctc 413 |||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| Sbjct: 4674908 gacgtcggtggtgtcggagtgggcgctcaagtgcagcggcggcggccccgcgctcgtctc 4674967 Query: 414 cctccc 419 |||||| Sbjct: 4674968 cctccc 4674973
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.12 Identities = 55/66 (83%), Gaps = 6/66 (9%) Strand = Plus / Plus Query: 360 gacgtcggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctc 413 |||||||||| | ||||||||| ||||||||| ||| |||||| ||||||||||| Sbjct: 4674889 gacgtcggtggtgtcggagtgggcgctcaagtgcagcggcggcggccccgcgctcgtctc 4674948 Query: 414 cctccc 419 |||||| Sbjct: 4674949 cctccc 4674954
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147355 Score = 46.1 bits (23), Expect = 0.12 Identities = 55/66 (83%), Gaps = 6/66 (9%) Strand = Plus / Minus Query: 360 gacgtcggtgatctcggagtggtcgctcaagt------gcgccggcccggcgctcgtctc 413 |||||||||| | ||||||||| ||||||||| ||| |||||| ||||||||||| Sbjct: 77219 gacgtcggtggtgtcggagtgggcgctcaagtgcagcggcggcggccccgcgctcgtctc 77160 Query: 414 cctccc 419 |||||| Sbjct: 77159 cctccc 77154
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 397 ggcccggcgctcgtctccctcccggc 422 ||||||||||||||||||||| |||| Sbjct: 4171131 ggcccggcgctcgtctccctctcggc 4171156 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 cgtccggcgcgtgggcgtggg 346 ||||||||||||||||||||| Sbjct: 11546842 cgtccggcgcgtgggcgtggg 11546862
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 397 ggcccggcgctcgtctccctcccggc 422 ||||||||||||||||||||| |||| Sbjct: 16352 ggcccggcgctcgtctccctctcggc 16377
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0036B04 Length = 136159 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 397 ggcccggcgctcgtctccctcccggc 422 ||||||||||||||||||||| |||| Sbjct: 104390 ggcccggcgctcgtctccctctcggc 104415
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 434 tcgccggctgcctcgccggcgg 455 |||||||||||||||||||||| Sbjct: 4755617 tcgccggctgcctcgccggcgg 4755638
>dbj|AB212624.1| Streptomyces sp. KO-3988 furaquinocin A biosynthetic gene cluster, complete cds Length = 27448 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 atctcggtgttcaccgacgcc 255 ||||||||||||||||||||| Sbjct: 17527 atctcggtgttcaccgacgcc 17547
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 cttcgccggctgcctcgccgg 452 ||||||||||||||||||||| Sbjct: 1422148 cttcgccggctgcctcgccgg 1422128 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 cgccgactcgctcctgggcc 493 |||||||||||||||||||| Sbjct: 1427269 cgccgactcgctcctgggcc 1427250
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 cggtgttcaccgacgccgagc 259 ||||||||||||||||||||| Sbjct: 940397 cggtgttcaccgacgccgagc 940377 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 453 cggcttcctcctcacgacgctcgccgac 480 |||| ||||||||||| ||||||||||| Sbjct: 7317367 cggcatcctcctcacgccgctcgccgac 7317394
>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03 Length = 133019 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 cgtccggcgcgtgggcgtggg 346 ||||||||||||||||||||| Sbjct: 116085 cgtccggcgcgtgggcgtggg 116105
>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0414E10 Length = 141760 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 cgtccggcgcgtgggcgtggg 346 ||||||||||||||||||||| Sbjct: 24728 cgtccggcgcgtgggcgtggg 24748
>ref|NM_197689.1| Oryza sativa (japonica cultivar-group) putative nitrate transporter (OSJNBb0014I11.9), mRNA Length = 2288 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 1130 gcctcgccggcggcttcctc 1149
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 cacggccgccgccccgctcc 91 |||||||||||||||||||| Sbjct: 2362699 cacggccgccgccccgctcc 2362718
>ref|NM_187740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2655 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 1747 gcgccgacgcgtcctgctcg 1728
>ref|NM_212680.1| Danio rerio zgc:77719 (zgc:77719), mRNA Length = 1398 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 384 gcctcgccggcggcttcctc 365
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 ttcgccggctgcctcgccggcggc 456 |||||||||| ||||||||||||| Sbjct: 3668433 ttcgccggctacctcgccggcggc 3668410
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 3496514 gcgccgacgcgtcctgctcg 3496533
>ref|XM_966915.1| PREDICTED: Tribolium castaneum similar to CG8830-PA, isoform A (LOC660706), mRNA Length = 2205 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 gccgcaggaagatgctgctc 510 |||||||||||||||||||| Sbjct: 1031 gccgcaggaagatgctgctc 1012
>gb|BC065852.1| Danio rerio zgc:77719, mRNA (cDNA clone MGC:77719 IMAGE:7000596), complete cds Length = 1398 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 384 gcctcgccggcggcttcctc 365
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 13861 gcgccgacgcgtcctgctcg 13842
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 94600 gcctcgccggcggcttcctc 94619
>ref|XM_681773.1| PREDICTED: Danio rerio similar to Ksp37 protein (LOC558543), mRNA Length = 996 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 35 gcctcgccggcggcttcctc 16
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 21239759 gcctcgccggcggcttcctc 21239740
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 3496625 gcgccgacgcgtcctgctcg 3496644
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tcccgtccggcgcgtgggcg 342 |||||||||||||||||||| Sbjct: 362729 tcccgtccggcgcgtgggcg 362710
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 14167 gcgccgacgcgtcctgctcg 14186
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 426 ctcgttcttcgccggctgcctcgc 449 ||||||||||||||||||| |||| Sbjct: 7172608 ctcgttcttcgccggctgcgtcgc 7172585 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cccggccgtgacgtcggtga 370 |||||||||||||||||||| Sbjct: 5224984 cccggccgtgacgtcggtga 5225003
>emb|BX005320.4| Zebrafish DNA sequence from clone DKEY-27P3, complete sequence Length = 142827 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cgccctgcagctcctcaagg 187 |||||||||||||||||||| Sbjct: 81401 cgccctgcagctcctcaagg 81420
>dbj|AK105765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E01, full insert sequence Length = 2001 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 836 gcctcgccggcggcttcctc 855
>dbj|AK105752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C01, full insert sequence Length = 2414 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 1169 gcgccgacgcgtcctgctcg 1150
>dbj|AK099829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D06, full insert sequence Length = 2698 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 1411 gcgccgacgcgtcctgctcg 1392
>dbj|AK068409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147D24, full insert sequence Length = 2149 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 1229 gcctcgccggcggcttcctc 1248
>dbj|AK068034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131E13, full insert sequence Length = 2636 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgccgacgcgtcctgctcg 297 |||||||||||||||||||| Sbjct: 1349 gcgccgacgcgtcctgctcg 1330
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tcgccggctgcctcgccggc 453 |||||||||||||||||||| Sbjct: 1819037 tcgccggctgcctcgccggc 1819018
>emb|BX119963.5| Zebrafish DNA sequence from clone DKEY-6A5 in linkage group 4, complete sequence Length = 229125 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 199961 gcctcgccggcggcttcctc 199942
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gcctcgccggcggcttcctc 462 |||||||||||||||||||| Sbjct: 21251023 gcctcgccggcggcttcctc 21251004
>emb|CR956624.6| Pig DNA sequence from clone CH242-281E17 on chromosome 17, complete sequence Length = 155839 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 gctcctgggccgcaggaaga 502 |||||||||||||||||||| Sbjct: 143507 gctcctgggccgcaggaaga 143526
>gb|L12157.1|SOYIDH Glycine max NADP-specific isocitrate dehydrogenase (idh1) mRNA, 3' end Length = 1560 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gctcggctgccacggcatcg 312 |||||||||||||||||||| Sbjct: 1305 gctcggctgccacggcatcg 1286 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,041,208 Number of Sequences: 3902068 Number of extensions: 3041208 Number of successful extensions: 66746 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64303 Number of HSP's gapped (non-prelim): 2425 length of query: 530 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 507 effective length of database: 17,143,297,704 effective search space: 8691651935928 effective search space used: 8691651935928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
