>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)|
          Length = 546

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -1

Query: 455 PSTTMHHREPPARAPXCSTAVGDLDEVAHLLCCTESAVELHXSIERCIAASTDVGERCNA 276
           P   +    P A  P   T+  D D ++ L  C + A EL   +    A++ D GE C  
Sbjct: 94  PGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESC-- 151

Query: 275 TPGAAGK 255
           TP A G+
Sbjct: 152 TPEAEGR 158

>RS5_ANAVT (Q3MFA5) 30S ribosomal protein S5|
          Length = 174

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +1

Query: 202 NAVRHPVEFVGGGATMALLPAAPG---VALQRSPTSVEAAMQRSIL 330
           N++ HP++ VGGGA + + PAAPG   +A     T +E A  R++L
Sbjct: 87  NSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVL 132

>RS5_ANASP (Q8YPJ5) 30S ribosomal protein S5|
          Length = 174

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +1

Query: 202 NAVRHPVEFVGGGATMALLPAAPG---VALQRSPTSVEAAMQRSIL 330
           N++ HP++ VGGGA + + PAAPG   +A     T +E A  R++L
Sbjct: 87  NSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVL 132

>MURF_MYCLE (O69556) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase|
           (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme)
          Length = 517

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = -1

Query: 467 QLRQPSTTMHHREPPARAPXCSTAVGDLDEVAHLLCCTESAVELHXSIERCIAASTDVG- 291
           +L +P  T+H R+P A A      V    +VA+ LC     +E   S+E    A    G 
Sbjct: 294 ELARPRFTLHTRDPRAGATEIQLGVYGDHQVANALCAAAVGLECGASVEEVAVALAATGP 353

Query: 290 ---ERCNATPGAAGKSAI 246
               R   T  A G + I
Sbjct: 354 VSRHRMQVTTRADGVTVI 371

>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)|
          Length = 3218

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = +1

Query: 208  VRHPVEFVGGGATMALLPAAPGVALQRSPTSVEAAMQRSILXWSSTALSVQHKRCATSS 384
            +RH V+ V GG  ++LLP + G    RS     A + R  L W  T L  QH  CA  S
Sbjct: 1229 LRHIVQGVSGGQELSLLPVSSGRCQNRSKFISSAILMR-CLAW--TQLLRQH--CAPGS 1282

>GAT4_YEAST (P40569) Protein GAT4|
          Length = 121

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 108 AGAATQHGQAGIGHRSSPEEAPSPWITQRRRKCSEAPCGVRWRRCNNGALAGCTWC 275
           +G+  QHG     +  S    P   IT+   +C E    ++WR   NGA   C  C
Sbjct: 26  SGSEAQHGLPR--NADSQPARPRTGITRTCGQCGEIKTSLQWREGPNGAACLCNAC 79

>FOXD1_MOUSE (Q61345) Forkhead box protein D1 (Forkhead-related protein FKHL8)|
           (Forkhead-related transcription factor 4) (FREAC-4)
           (Brain factor-2) (HFH-BF-2)
          Length = 456

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 21/51 (41%), Positives = 23/51 (45%)
 Frame = +1

Query: 232 GGGATMALLPAAPGVALQRSPTSVEAAMQRSILXWSSTALSVQHKRCATSS 384
           GGG       A P VAL RS     AA   S+   SS AL   H+  A SS
Sbjct: 397 GGGGCAVQAAAGPAVALTRSLVVAAAAAASSVS--SSAALGTLHQGTALSS 445

>PDE2_CAEEL (P30645) Probable 3',5'-cyclic phosphodiesterase pde-2 (EC|
           3.1.4.17)
          Length = 859

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = +1

Query: 61  AHRRTKEEAGG-----WRRSS-PVLQHNTGRPE*GTAHHRRKLRPRGSRNDDGNAVRHPV 222
           A + + E AG      WR++S P L  N         + + +L+ RG+++D G ++R+ +
Sbjct: 55  AAKSSNEPAGSASPTVWRKTSHPPLHFNNNETR--NRNLQMQLKNRGTKDDWGASLRYDI 112

Query: 223 EFVGGGATMALLPAAP 270
           E       + LLP  P
Sbjct: 113 EEPTSSGLLELLPDVP 128

>HM2L1_HUMAN (Q9UGU5) High mobility group protein 2-like 1 (HMGBCG protein)|
          Length = 601

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 94  WRRSSPVLQHNTGRPE*GTAHHRRKLRPRGSRNDDGNAVRHPVEFVGGGATMALLPAAPG 273
           W++ +  LQH   + E  T   R+     GS     ++V           T  LLPA+P 
Sbjct: 456 WKQKAQYLQHKQNKAE-ATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPA 514

Query: 274 VALQRSPTSVEAAMQ 318
            A +  P  V A +Q
Sbjct: 515 KAPETEPIDVAAHLQ 529

>CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displacement protein)|
           (CDP) (Homeobox protein Cux)
          Length = 1515

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 318 TLDTPMELDGALSAAQKVRDLVKIADCGAAXWSSRWWLPMMHCRRRLSKLQRS 476
           TLD P    G+  AAQ V   +K      + W   WW P+   RR L+  + +
Sbjct: 791 TLDPP----GSADAAQGVLRPMKSELVRGSTWKDPWWSPIQPERRNLTSSEET 839

>SPAG1_RAT (Q5U2X2) Sperm-associated antigen 1 (Infertility-related sperm|
           protein Spag-1) (HSD-3.8)
          Length = 893

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
 Frame = +1

Query: 97  RRSSPVLQHNTGRPE*GTAH--HRRKLRPRGSRNDDGNAVRHPVEFVGGGATMALLPAAP 270
           R   P  +   G+PE GTA       L  R + +  G+      E   GG          
Sbjct: 394 RTPMPGAEQQEGQPETGTASTSDNHDLEERRAADSPGDLKSRGNELFRGGQFAEAAVQYS 453

Query: 271 GVALQRSPTSVEAAMQRSILXWSSTALSVQHKRC 372
           G   Q  PT  E A + SIL  +  A  ++   C
Sbjct: 454 GAIAQLEPTGSENADELSILYSNRAACYLKEGNC 487

>XPC_DROME (Q24595) DNA-repair protein complementing XP-C cells homolog|
           (Xeroderma pigmentosum group C-complementing protein
           homolog) (XPCDM) (Mutagen-sensitive 209 protein)
          Length = 1293

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 9   FPPFPLSCHTRENEPEASTPPHEGGGRRLAPFVAGAATQHGQAGIGHRSSPEE 167
           + P P +  T  ++ + +TP   G      P  +GA  QHG A     SS E+
Sbjct: 94  YRPPPKTFPTSPSQQKENTPRASGSKNAKTPNESGARNQHGPADSSSESSVED 146

>FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FREAC-10)|
           (Forkhead-like 18 protein)
          Length = 330

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 233 PTNSTGCLTAFPSSLRDPRGRSFLR**AVPYSGLPV-LCCSTGDERRQPP 87
           P  +TG   +FP  L DP+G SF          +P  +C +T D R +PP
Sbjct: 144 PNATTGRQCSFPPELPDPKGLSF----GGLVGAMPASMCPATTDGRPRPP 189

>RS5_THICR (Q31IW5) 30S ribosomal protein S5|
          Length = 169

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 196 DGNAVRHPVEFVGGGATMALLPAAPGVAL 282
           DG  +++P+ F  G A + +LPA+ G  +
Sbjct: 79  DGGTLQYPINFKQGAANIVMLPASDGTGI 107

>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 19/81 (23%), Positives = 30/81 (37%)
 Frame = +3

Query: 21  PLSCHTRENEPEASTPPHEGGGRRLAPFVAGAATQHGQAGIGHRSSPEEAPSPWITQRRR 200
           PLS       P + TP   GG  + +P  AG+      A     +SP  +P+P +    +
Sbjct: 59  PLSTPAVVIPPPSPTPEPRGGKAKRSPSAAGSGGPPTPAAAAQPASPAPSPAPGLAAMLK 118

Query: 201 KCSEAPCGVRWRRCNNGALAG 263
               +      RR    +  G
Sbjct: 119 MVHSSVAPGNGRRATGSSSPG 139

>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1207

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = -1

Query: 431 EPPARAPXCSTAVGDLDEVAHLLCCTESAVELHXSIER---CIAASTDVGERCNATPGAA 261
           +PP   P    A  D DEV  LL     + +L+  + R    +A    V +R N  PG  
Sbjct: 147 QPPPSPPPAQHAEPDGDEV--LLRIPAFSRDLYLLLRRDGRFLAPRFAVEQRPNPGPGPT 204

Query: 260 GKSAIVAPPPTNSTGC 213
           G ++   PP     GC
Sbjct: 205 GAASAPQPPAPPDAGC 220

>GATA6_MOUSE (Q61169) Transcription factor GATA-6 (GATA-binding factor 6)|
          Length = 444

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 33  HTRENEPEASTPPHEGGGRR----LAPFVAGAATQHGQAGIGHRSSPEEA 170
           H   ++  A +PP+ GGG        P  AG+AT H  A   +  SP  A
Sbjct: 75  HPGWSQASADSPPYGGGGAAGGGAAGPGGAGSATAHASARFPYSPSPPMA 124

>RR5_CYAPA (P23402) Cyanelle 30S ribosomal protein S5|
          Length = 169

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 202 NAVRHPVEFVGGGATMALLPAAPG---VALQRSPTSVEAAMQRSIL 330
           N++ HP++ +GG A + + P+A G   +A     T +E A  R+IL
Sbjct: 86  NSIPHPIDGIGGAARVIMRPSAEGTGVIAGGAVRTVLELAGVRNIL 131

>RT09_CAEEL (P34388) Probable 40S ribosomal protein S9, mitochondrial precursor|
          Length = 392

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -1

Query: 212 LTAFPSSLRDPRGRSFLR**AVPYSGLPVLCCSTGDERRQPPASSFVRRCASLWFILSRV 33
           L  FPS L DP  R  +R    P   LP     T DE  +P  S F      ++ +LS +
Sbjct: 84  LYLFPSGLTDPNARPVMR---PPDEILPKFQRFTFDEEGKPEGSRFFTLSPKIYGLLSDI 140

>HXA11_CHICK (P31258) Homeobox protein Hox-A11 (Ghox-1I) (Chox-1.9)|
          Length = 297

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
 Frame = +3

Query: 18  FPLSCHTRENEPEASTPPHEGGGRRLAPFVAGAATQHGQAGIG---------HRSSPEEA 170
           F  +  T EN   A  PP + G +  A   A AAT   + G G          R  PE  
Sbjct: 144 FETAYGTAENPSSADYPPDKSGEKAPAAAGATAATSSSEGGCGGAAAAAGKERRRRPESG 203

Query: 171 PSP 179
            SP
Sbjct: 204 SSP 206

>NIFE_METBA (P51755) Nitrogenase iron-molybdenum cofactor biosynthesis protein|
           nifE (Fragment)
          Length = 463

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +3

Query: 165 EAPSPWITQRRRKCSEAPCGVRWRRCNNGALAGCTWCCVAALSDVR*SCNATLDTPMELD 344
           E   P+IT+++ K  E P G     C+N +LAG         S  R   N   D    + 
Sbjct: 12  EERKPYITRKQEKGQEIPLG-----CDNNSLAGAISQRACVYSGARVVLNPVTDAVHLVH 66

Query: 345 GALSAAQKVRDL 380
           G +  A    D+
Sbjct: 67  GPIGCAGYTWDI 78

>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 48  EPEASTPPHEGGGRRLAPFVAGAATQHGQAGIGHRSSPEEAPSPWITQRRRKCSEAPCGV 227
           +P+ +T P    G+   P +AG   + G  G    + P+ AP P   + +R     P GV
Sbjct: 372 DPQGATGPLGPKGQTGKPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 431

>RR5_PORPU (P51298) Chloroplast 30S ribosomal protein S5|
          Length = 174

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 202 NAVRHPVEFVGGGATMALLPAAPG 273
           N++ HP+  + G A + L P+APG
Sbjct: 86  NSIPHPINGISGAAQVILRPSAPG 109

>NIFE_RHOCA (P19055) Nitrogenase iron-molybdenum cofactor biosynthesis protein|
           nifE
          Length = 477

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 342 DGALSAAQKVRDLVKIADCGAAXWSSRW 425
           DGA++A Q + D+  +    AA WS+ W
Sbjct: 49  DGAMTALQPIVDVAHLVHAPAACWSNGW 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,666,437
Number of Sequences: 219361
Number of extensions: 1575938
Number of successful extensions: 5872
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5870
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)