ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC111056.20| Mus musculus chromosome 3, clone RP24-537K9, com... 46 0.10
2gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
3gb|AC164574.15| Mus musculus 6 BAC RP23-446I7 (Roswell Park Canc... 44 0.41
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.41
5gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
6gb|AC159338.10| Mus musculus 6 BAC RP24-540A24 (Roswell Park Can... 44 0.41
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
9dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
10gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, com... 42 1.6
11gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 42 1.6
12emb|AL606904.12| Mouse DNA sequence from clone RP23-182D20 on ch... 42 1.6
13gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Canc... 40 6.4
14gb|AC152076.4| Mus musculus BAC clone RP23-326O10 from chromosom... 40 6.4
15ref|NM_183793.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
16gb|AC159417.1| Trypanosoma brucei chromosome 8 clone RPCI93-25L8... 40 6.4
17gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4... 40 6.4
18gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 6.4
19gb|AC119884.13| Mus musculus chromosome 15, clone RP24-213O5, co... 40 6.4
20gb|BC074172.1| Xenopus laevis MGC81985 protein, mRNA (cDNA clone... 40 6.4
21gb|AC124547.4| Mus musculus BAC clone RP23-274I8 from chromosome... 40 6.4
22gb|AC125121.4| Mus musculus BAC clone RP24-267O4 from chromosome... 40 6.4
23gb|AC140375.2| Mus musculus BAC clone RP23-183J2 from chromosome... 40 6.4
24emb|Z81106.1|CER06C1 Caenorhabditis elegans Cosmid R06C1, comple... 40 6.4
25gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome... 40 6.4
26gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.4
27gb|AC069546.6| Homo sapiens chromosome 10 clone RP11-507K13, com... 40 6.4
28gb|AC091617.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 6.4
29emb|AL117350.12|HSJ803J11 Human DNA sequence from clone RP4-803J... 40 6.4
30emb|AL662891.9| Mouse DNA sequence from clone RP23-20N14 on chro... 40 6.4
31gb|AC097633.2| Homo sapiens chromosome 3 clone RP11-96F15, compl... 40 6.4
32gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, comp... 40 6.4
33gb|AC136191.5| Rattus norvegicus BAC CH230-52I17 (Children's Ho... 40 6.4
34gb|AC112083.7| Rattus norvegicus BAC CH230-288C21 (Children's H... 40 6.4
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
36gb|AC156276.6| Mus musculus 10 BAC RP24-323L12 (Roswell Park Can... 40 6.4
37gb|AC083973.14| Homo sapiens chromosome 8, clone RP11-231D20, co... 40 6.4
38ref|XM_574450.1| PREDICTED: Rattus norvegicus sphingosine kinase... 40 6.4
39gb|AC137674.2| Homo sapiens chromosome 3 clone RP11-348I13, comp... 40 6.4
40gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete... 40 6.4
41dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.4
42emb|BX005087.5| Zebrafish DNA sequence from clone CH211-91A7 in ... 40 6.4
43dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.4
44dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
45dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
46emb|BX537327.7| Mouse DNA sequence from clone RP23-463N9 on chro... 40 6.4
47gb|AC102243.14| Mus musculus chromosome 18, clone RP24-141G8, co... 40 6.4
48emb|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2... 40 6.4
49gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.4
50gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.4
51gb|AC145932.3| Gallus gallus BAC clone CH261-37K10 from chromoso... 40 6.4
52emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 6.4
53dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.4 
>gb|AC111056.20| Mus musculus chromosome 3, clone RP24-537K9, complete sequence
          Length = 165443

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 6      ctttttcctccttttcccctttc 28
              |||||||||||||||||||||||
Sbjct: 108600 ctttttcctccttttcccctttc 108622
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>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
              complete sequence
          Length = 138054

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 5      tctttttcctccttttcccctttcct 30
              |||||||||| |||||||||||||||
Sbjct: 134281 tctttttccttcttttcccctttcct 134306
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>gb|AC164574.15| Mus musculus 6 BAC RP23-446I7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 188358

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 9      tttcctccttttcccctttcct 30
              ||||||||||||||||||||||
Sbjct: 135515 tttcctccttttcccctttcct 135494
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 5       tctttttcctccttttcccctttcct 30
               |||||||||| |||||||||||||||
Sbjct: 1909419 tctttttccttcttttcccctttcct 1909444
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>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
             complete sequence
          Length = 122218

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 5     tctttttcctccttttcccctttcct 30
             |||||||||| |||||||||||||||
Sbjct: 65992 tctttttccttcttttcccctttcct 65967
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>gb|AC159338.10| Mus musculus 6 BAC RP24-540A24 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 173081

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 9      tttcctccttttcccctttcct 30
              ||||||||||||||||||||||
Sbjct: 170340 tttcctccttttcccctttcct 170319
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 5       tctttttcctccttttcccctttcct 30
               |||||||||| |||||||||||||||
Sbjct: 1909417 tctttttccttcttttcccctttcct 1909442
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 5        tctttttcctccttttcccctttcct 30
                |||||||||| |||||||||||||||
Sbjct: 19804678 tctttttccttcttttcccctttcct 19804703
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>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G07
          Length = 149119

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 5      tctttttcctccttttcccctttcct 30
              |||||||||| |||||||||||||||
Sbjct: 113229 tctttttccttcttttcccctttcct 113254
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>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence
          Length = 153684

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      tttcctccttttcccctttcc 29
              |||||||||||||||||||||
Sbjct: 120857 tttcctccttttcccctttcc 120837
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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      tttcctccttttcccctttcc 29
              |||||||||||||||||||||
Sbjct: 137455 tttcctccttttcccctttcc 137475
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>emb|AL606904.12| Mouse DNA sequence from clone RP23-182D20 on chromosome 4, complete
              sequence
          Length = 172024

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 4      ctctttttcctccttttcccctttc 28
              ||||| |||||||||||||||||||
Sbjct: 103704 ctcttcttcctccttttcccctttc 103728
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>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 251631

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    ctcagtgcagcacaaaaggt 370
              ||||||||||||||||||||
Sbjct: 140075 ctcagtgcagcacaaaaggt 140094
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>gb|AC152076.4| Mus musculus BAC clone RP23-326O10 from chromosome 18, complete
            sequence
          Length = 215816

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    ctttttcctccttttcccctttcc 29
            |||||||| |||||||||||||||
Sbjct: 6231 ctttttcccccttttcccctttcc 6208
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>ref|NM_183793.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1782

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 367 aggtgcgcgacctcgtcaag 386
           ||||||||||||||||||||
Sbjct: 701 aggtgcgcgacctcgtcaag 720
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>gb|AC159417.1| Trypanosoma brucei chromosome 8 clone RPCI93-25L8, complete sequence
          Length = 36265

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ctctttttcctccttttccc 23
             ||||||||||||||||||||
Sbjct: 35502 ctctttttcctccttttccc 35521
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>gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4, complete sequence
          Length = 138187

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    ctctttttcctccttttccc 23
            ||||||||||||||||||||
Sbjct: 4931 ctctttttcctccttttccc 4950
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ctctttttcctccttttccc 23
              ||||||||||||||||||||
Sbjct: 322384 ctctttttcctccttttccc 322403
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>gb|AC119884.13| Mus musculus chromosome 15, clone RP24-213O5, complete sequence
          Length = 168400

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tccttttcccctttcctgtc 33
              ||||||||||||||||||||
Sbjct: 144422 tccttttcccctttcctgtc 144441
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>gb|BC074172.1| Xenopus laevis MGC81985 protein, mRNA (cDNA clone MGC:81985
           IMAGE:7010412), complete cds
          Length = 2430

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 gcaacaatggcgctcttgcc 260
           ||||||||||||||||||||
Sbjct: 510 gcaacaatggcgctcttgcc 491
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>gb|AC124547.4| Mus musculus BAC clone RP23-274I8 from chromosome 1, complete sequence
          Length = 225058

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tcctccttttcccctttcct 30
             ||||||||||||||||||||
Sbjct: 84465 tcctccttttcccctttcct 84484
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>gb|AC125121.4| Mus musculus BAC clone RP24-267O4 from chromosome 6, complete sequence
          Length = 162573

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tttttcctccttttcccctt 26
             ||||||||||||||||||||
Sbjct: 53751 tttttcctccttttcccctt 53770
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>gb|AC140375.2| Mus musculus BAC clone RP23-183J2 from chromosome 19, complete sequence
          Length = 198254

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     ctttttcctccttttcccctttcc 29
             ||||||||||||| ||||||||||
Sbjct: 35128 ctttttcctccttgtcccctttcc 35105
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>emb|Z81106.1|CER06C1 Caenorhabditis elegans Cosmid R06C1, complete sequence
          Length = 38980

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   gagctctcgctggtggctcc 432
             ||||||||||||||||||||
Sbjct: 32512 gagctctcgctggtggctcc 32531
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>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence
          Length = 192062

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tttttcctccttttcccctt 26
              ||||||||||||||||||||
Sbjct: 108248 tttttcctccttttcccctt 108267
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    gcgcgacctcgtcaagatcg 390
              ||||||||||||||||||||
Sbjct: 318806 gcgcgacctcgtcaagatcg 318825
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>gb|AC069546.6| Homo sapiens chromosome 10 clone RP11-507K13, complete sequence
          Length = 198402

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    ttcctccttttcccctttcctgtc 33
             |||||||||||| |||||||||||
Sbjct: 30701 ttcctccttttctcctttcctgtc 30678
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>gb|AC091617.2| Rattus norvegicus strain Brown Norway clone RP31-371K3, complete
             sequence
          Length = 150494

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ctctttttcctccttttccc 23
             ||||||||||||||||||||
Sbjct: 59434 ctctttttcctccttttccc 59415
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>emb|AL117350.12|HSJ803J11 Human DNA sequence from clone RP4-803J11 on chromosome 1 Contains the
             3' end of the RAB4A gene for RAB4A, member RAS oncogene
             family, a  novel gene, a novel gene (LOC126731) and a CpG
             island, complete sequence
          Length = 106441

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     tttttcctccttttcccctttcct 30
             ||||||||||||||||| ||||||
Sbjct: 13934 tttttcctccttttcccttttcct 13957
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>emb|AL662891.9| Mouse DNA sequence from clone RP23-20N14 on chromosome 11 Contains the
              Psme4 gene for proteasome (prosome, macropain) activator
              subunit 4, the Gpr75 gene for G protein-coupled receptor
              75, a novel pseudogene, a PDZ and LIM domain 1 (elfin)
              (Pdlim1) pseudogene, two novel genes, the 5' end of the
              Asb3 gene for ankyrin repeat and SOCS box-containing
              protein 3, a methyl-CpG binding domain protein 2
              interacting protein (Mbdin) pseudogene and a CpG island,
              complete sequence
          Length = 244971

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      ctctttttcctccttttccccttt 27
              ||||||||| ||||||||||||||
Sbjct: 104306 ctctttttcttccttttccccttt 104329
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>gb|AC097633.2| Homo sapiens chromosome 3 clone RP11-96F15, complete sequence
          Length = 159349

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tctttttcctccttttcccc 24
              ||||||||||||||||||||
Sbjct: 143641 tctttttcctccttttcccc 143622
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>gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, complete sequence
          Length = 160693

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     tctttttcctccttttcccc 24
             ||||||||||||||||||||
Sbjct: 83360 tctttttcctccttttcccc 83341
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>gb|AC136191.5| Rattus norvegicus  BAC CH230-52I17 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 221923

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   acctggtgttgcgttgcagc 286
             ||||||||||||||||||||
Sbjct: 20416 acctggtgttgcgttgcagc 20435
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>gb|AC112083.7| Rattus norvegicus  BAC CH230-288C21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 191137

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      ctttttcctccttttcccctttcc 29
              ||||||||||||| ||||||||||
Sbjct: 151071 ctttttcctccttgtcccctttcc 151094
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 367      aggtgcgcgacctcgtcaag 386
                ||||||||||||||||||||
Sbjct: 12328039 aggtgcgcgacctcgtcaag 12328058
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>gb|AC156276.6| Mus musculus 10 BAC RP24-323L12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 199119

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tctttttcctccttttcccc 24
             ||||||||||||||||||||
Sbjct: 64435 tctttttcctccttttcccc 64454
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>gb|AC083973.14| Homo sapiens chromosome 8, clone RP11-231D20, complete sequence
          Length = 188573

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tctttttcctccttttcccc 24
              ||||||||||||||||||||
Sbjct: 113637 tctttttcctccttttcccc 113656
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>ref|XM_574450.1| PREDICTED: Rattus norvegicus sphingosine kinase 2 (predicted)
           (Sphk2_predicted), mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 acctggtgttgcgttgcagc 286
           ||||||||||||||||||||
Sbjct: 134 acctggtgttgcgttgcagc 153
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>gb|AC137674.2| Homo sapiens chromosome 3 clone RP11-348I13, complete sequence
          Length = 182649

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    tctttttcctccttttcccc 24
            ||||||||||||||||||||
Sbjct: 7018 tctttttcctccttttcccc 6999
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>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence
          Length = 113862

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ctctttttcctccttttccccttt 27
             |||||||||||||||||| |||||
Sbjct: 72026 ctctttttcctccttttctccttt 72003
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 374     cgacctcgtcaagatcgccg 393
               ||||||||||||||||||||
Sbjct: 4284000 cgacctcgtcaagatcgccg 4284019
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>emb|BX005087.5| Zebrafish DNA sequence from clone CH211-91A7 in linkage group 10,
             complete sequence
          Length = 88649

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ctctttttcctccttttccccttt 27
             |||||||||||||||||| |||||
Sbjct: 53789 ctctttttcctccttttctccttt 53766
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 93      ctggcgccgttcgtcgccgg 112
               ||||||||||||||||||||
Sbjct: 3172155 ctggcgccgttcgtcgccgg 3172174
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>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0011P19
          Length = 150811

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   aggtgcgcgacctcgtcaag 386
             ||||||||||||||||||||
Sbjct: 13684 aggtgcgcgacctcgtcaag 13703
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>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0426D06
          Length = 162173

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    aggtgcgcgacctcgtcaag 386
              ||||||||||||||||||||
Sbjct: 152665 aggtgcgcgacctcgtcaag 152684
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>emb|BX537327.7| Mouse DNA sequence from clone RP23-463N9 on chromosome 4, complete
             sequence
          Length = 103859

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     ctttttcctccttttcccctttcc 29
             |||||||| |||||||||||||||
Sbjct: 93409 ctttttcccccttttcccctttcc 93386
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>gb|AC102243.14| Mus musculus chromosome 18, clone RP24-141G8, complete sequence
          Length = 181246

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     ctttttcctccttttcccctttcc 29
             |||||||| |||||||||||||||
Sbjct: 51389 ctttttcccccttttcccctttcc 51412
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>emb|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2510G9 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185132

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     tttcctccttttcccctttc 28
             ||||||||||||||||||||
Sbjct: 57121 tttcctccttttcccctttc 57140
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 388     tcgccgactgcggtgctgca 407
               ||||||||||||||||||||
Sbjct: 5326749 tcgccgactgcggtgctgca 5326730
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     gtggagttcgttggcggcgg 239
               ||||||||||||||||||||
Sbjct: 1653230 gtggagttcgttggcggcgg 1653249
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>gb|AC145932.3| Gallus gallus BAC clone CH261-37K10 from chromosome unknown, complete
             sequence
          Length = 189873

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ctccttttcccctttcctgt 32
             ||||||||||||||||||||
Sbjct: 43097 ctccttttcccctttcctgt 43116
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 4       ctctttttcctccttttccccttt 27
               |||||||||||| |||||||||||
Sbjct: 1620448 ctctttttcctctttttccccttt 1620425
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>dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT15D01, TM0004a,
             complete sequence
          Length = 92631

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ctctttttcctccttttccccttt 27
             ||||||||||| ||||||||||||
Sbjct: 69253 ctctttttccttcttttccccttt 69230


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,877,541
Number of Sequences: 3902068
Number of extensions: 2877541
Number of successful extensions: 61996
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61429
Number of HSP's gapped (non-prelim): 567
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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