ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06f08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 353 bits (178), Expect = 3e-94 Identities = 322/370 (87%) Strand = Plus / Minus Query: 112 tgcaggtgacgttcctgaagtgcggcggcgtggccgtgggcacgggcatgcaccacgtga 171 |||||||||||||||||||||| || ||||||||||| ||||||||||||||||| || | Sbjct: 15198553 tgcaggtgacgttcctgaagtgtggaggcgtggccgtcggcacgggcatgcaccatgtca 15198494 Query: 172 ccatggacggcgcgggcgcgatccagttcatccggacgtggacgaccctggcgcgcgggc 231 | |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct: 15198493 cgatggacggcgcgggcgcgttccagttcatccggacgtggacggggctgtcgcgtgggc 15198434 Query: 232 tggacgccgcgtccgtgtacccgaccccgccggtgcacgaccgcacggtgctgcgcgcgc 291 | ||||||||| ||| || ||| | |||||| |||||||||||| | || || |||| Sbjct: 15198433 tcgacgccgcggccgcgtcgccgtcgccgccgtcgcacgaccgcaccctcctccgggcgc 15198374 Query: 292 gctctcccccgcacgtcgcgttcgagcacccggtctactccccgagcaacctcaacggcc 351 |||| || ||||||||| |||||||||||||||| |||||||||||| |||||||||| | Sbjct: 15198373 gctcgccgccgcacgtcccgttcgagcacccggtgtactccccgagctacctcaacgggc 15198314 Query: 352 tgccccgccccttcgtcacccgcgtctacgccgtctcgcccaagctcctcgccggcatca 411 |||| || || ||||| |||||||||||| ||||| |||||||||||||||||| ||||| Sbjct: 15198313 tgccgcggccgttcgtgacccgcgtctactccgtcccgcccaagctcctcgccgacatca 15198254 Query: 412 agtccagctgcgcgcccggcgtgtcgacctactgcgcgctcaccgcgcacctgtggcgcg 471 || || |||||| ||||||||||| || ||| ||||| | ||||||||||||||||||| Sbjct: 15198253 aggccgcctgcgcccccggcgtgtccacgtacggcgcggtgaccgcgcacctgtggcgcg 15198194 Query: 472 ccatgtgcgt 481 |||||||||| Sbjct: 15198193 ccatgtgcgt 15198184
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 353 bits (178), Expect = 3e-94 Identities = 322/370 (87%) Strand = Plus / Minus Query: 112 tgcaggtgacgttcctgaagtgcggcggcgtggccgtgggcacgggcatgcaccacgtga 171 |||||||||||||||||||||| || ||||||||||| ||||||||||||||||| || | Sbjct: 92529 tgcaggtgacgttcctgaagtgtggaggcgtggccgtcggcacgggcatgcaccatgtca 92470 Query: 172 ccatggacggcgcgggcgcgatccagttcatccggacgtggacgaccctggcgcgcgggc 231 | |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||| Sbjct: 92469 cgatggacggcgcgggcgcgttccagttcatccggacgtggacggggctgtcgcgtgggc 92410 Query: 232 tggacgccgcgtccgtgtacccgaccccgccggtgcacgaccgcacggtgctgcgcgcgc 291 | ||||||||| ||| || ||| | |||||| |||||||||||| | || || |||| Sbjct: 92409 tcgacgccgcggccgcgtcgccgtcgccgccgtcgcacgaccgcaccctcctccgggcgc 92350 Query: 292 gctctcccccgcacgtcgcgttcgagcacccggtctactccccgagcaacctcaacggcc 351 |||| || ||||||||| |||||||||||||||| |||||||||||| |||||||||| | Sbjct: 92349 gctcgccgccgcacgtcccgttcgagcacccggtgtactccccgagctacctcaacgggc 92290 Query: 352 tgccccgccccttcgtcacccgcgtctacgccgtctcgcccaagctcctcgccggcatca 411 |||| || || ||||| |||||||||||| ||||| |||||||||||||||||| ||||| Sbjct: 92289 tgccgcggccgttcgtgacccgcgtctactccgtcccgcccaagctcctcgccgacatca 92230 Query: 412 agtccagctgcgcgcccggcgtgtcgacctactgcgcgctcaccgcgcacctgtggcgcg 471 || || |||||| ||||||||||| || ||| ||||| | ||||||||||||||||||| Sbjct: 92229 aggccgcctgcgcccccggcgtgtccacgtacggcgcggtgaccgcgcacctgtggcgcg 92170 Query: 472 ccatgtgcgt 481 |||||||||| Sbjct: 92169 ccatgtgcgt 92160
>dbj|AK101900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071B22, full insert sequence Length = 1707 Score = 349 bits (176), Expect = 5e-93 Identities = 320/368 (86%) Strand = Plus / Plus Query: 114 caggtgacgttcctgaagtgcggcggcgtggccgtgggcacgggcatgcaccacgtgacc 173 |||||||||||||||||||| || ||||||||||| ||||||||||||||||| || || Sbjct: 516 caggtgacgttcctgaagtgtggaggcgtggccgtcggcacgggcatgcaccatgtcacg 575 Query: 174 atggacggcgcgggcgcgatccagttcatccggacgtggacgaccctggcgcgcgggctg 233 |||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct: 576 atggacggcgcgggcgcgttccagttcatccggacgtggacggggctgtcgcgtgggctc 635 Query: 234 gacgccgcgtccgtgtacccgaccccgccggtgcacgaccgcacggtgctgcgcgcgcgc 293 ||||||||| ||| || ||| | |||||| |||||||||||| | || || |||||| Sbjct: 636 gacgccgcggccgcgtcgccgtcgccgccgtcgcacgaccgcaccctcctccgggcgcgc 695 Query: 294 tctcccccgcacgtcgcgttcgagcacccggtctactccccgagcaacctcaacggcctg 353 || || ||||||||| |||||||||||||||| |||||||||||| |||||||||| ||| Sbjct: 696 tcgccgccgcacgtcccgttcgagcacccggtgtactccccgagctacctcaacgggctg 755 Query: 354 ccccgccccttcgtcacccgcgtctacgccgtctcgcccaagctcctcgccggcatcaag 413 || || || ||||| |||||||||||| ||||| |||||||||||||||||| ||||||| Sbjct: 756 ccgcggccgttcgtgacccgcgtctactccgtcccgcccaagctcctcgccgacatcaag 815 Query: 414 tccagctgcgcgcccggcgtgtcgacctactgcgcgctcaccgcgcacctgtggcgcgcc 473 || |||||| ||||||||||| || ||| ||||| | ||||||||||||||||||||| Sbjct: 816 gccgcctgcgcccccggcgtgtccacgtacggcgcggtgaccgcgcacctgtggcgcgcc 875 Query: 474 atgtgcgt 481 |||||||| Sbjct: 876 atgtgcgt 883
>dbj|AK058559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D08, full insert sequence Length = 1706 Score = 341 bits (172), Expect = 1e-90 Identities = 319/368 (86%) Strand = Plus / Plus Query: 114 caggtgacgttcctgaagtgcggcggcgtggccgtgggcacgggcatgcaccacgtgacc 173 |||||||||||||||||||| || ||||||||||| ||||||||||||||||| || || Sbjct: 515 caggtgacgttcctgaagtgtggaggcgtggccgtcggcacgggcatgcaccatgtcacg 574 Query: 174 atggacggcgcgggcgcgatccagttcatccggacgtggacgaccctggcgcgcgggctg 233 |||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||| Sbjct: 575 atggacggcgcgggcgcgttccagttcatccggacgtggacggggctgtcgcgtgggctc 634 Query: 234 gacgccgcgtccgtgtacccgaccccgccggtgcacgaccgcacggtgctgcgcgcgcgc 293 ||||||||| ||| || ||| | |||||| |||||||||||| | || || |||||| Sbjct: 635 gacgccgcggccgcgtcgccgtcgccgccgtcgcacgaccgcaccctcctccgggcgcgc 694 Query: 294 tctcccccgcacgtcgcgttcgagcacccggtctactccccgagcaacctcaacggcctg 353 || || ||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||| Sbjct: 695 tcgccgccgcacgtcccgttcgagcacccggtgtaccccccgagctacctcaacgggctg 754 Query: 354 ccccgccccttcgtcacccgcgtctacgccgtctcgcccaagctcctcgccggcatcaag 413 || || || ||||| |||||||||||| ||||| |||||||||||||||||| ||||||| Sbjct: 755 ccgcggccgttcgtgacccgcgtctactccgtcccgcccaagctcctcgccgacatcaag 814 Query: 414 tccagctgcgcgcccggcgtgtcgacctactgcgcgctcaccgcgcacctgtggcgcgcc 473 || |||||| ||||||||||| || ||| ||||| | ||||||||||||||||||||| Sbjct: 815 gccgcctgcgcccccggcgtgtccacgtacggcgcggtgaccgcgcacctgtggcgcgcc 874 Query: 474 atgtgcgt 481 |||||||| Sbjct: 875 atgtgcgt 882
>gb|AY104442.1| Zea mays PCO096884 mRNA sequence Length = 1115 Score = 123 bits (62), Expect = 6e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 341 cctcaacggcctgccccgccccttcgtcacccgcgtctacgccgtctcgcccaagctcct 400 ||||| ||||| ||||| |||| |||||||||| ||||| |||||||||| |||||||| Sbjct: 206 cctcagcggccgcccccggccctacgtcacccgcatctactccgtctcgccgaagctcct 265 Query: 401 cgccggcatcaagtccagctgcgcgcccggcgtgtcgacctactgcgcgctcaccgcgca 460 ||||| | ||||||| |||||||||| |||||||| ||||||||||| |||||||||| Sbjct: 266 cgccgacgtcaagtcgcgctgcgcgccaggcgtgtccacctactgcgccgtcaccgcgca 325 Query: 461 cctgtggcgc 470 ||| |||||| Sbjct: 326 cctctggcgc 335 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 162 caccacgtgaccatggacggcgcgggcgcgatccagttcatccggacgtgg 212 ||||||| | |||||||||||| ||||||| ||||||| || | ||||||| Sbjct: 27 caccacgcggccatggacggcgtgggcgcgttccagtttatgcagacgtgg 77
>gb|BT009450.1| Triticum aestivum clone wlmk8.pk0021.e3:fis, full insert mRNA sequence Length = 1587 Score = 117 bits (59), Expect = 3e-23 Identities = 143/171 (83%) Strand = Plus / Plus Query: 312 ttcgagcacccggtctactccccgagcaacctcaacggcctgccccgccccttcgtcacc 371 |||||||||||||| ||||| ||| ||||||||||| || || |||||||||||| Sbjct: 680 ttcgagcacccggtgtactcgccggcgtacctcaacggcgccccacggcccttcgtcacc 739 Query: 372 cgcgtctacgccgtctcgcccaagctcctcgccggcatcaagtccagctgcgcgcccggc 431 ||||||||| |||| || | ||||||||||||| |||||||||| | |||||||| ||| Sbjct: 740 cgcgtctactccgtgtcccagaagctcctcgccgacatcaagtcccggtgcgcgcctggc 799 Query: 432 gtgtcgacctactgcgcgctcaccgcgcacctgtggcgcgccatgtgcgtg 482 ||||| |||||| |||| | ||||||||||| |||||| |||||||||| Sbjct: 800 gtgtccacctacggcgccgtgaccgcgcacctctggcgctgcatgtgcgtg 850 Score = 115 bits (58), Expect = 1e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 114 caggtgacgttcctgaagtgcggcggcgtggccgtgggcacgggcatgcaccacgtgacc 173 |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| Sbjct: 482 caggtgacgttcctcaagtgcggcggcgtggtgctgggcacgggcatccaccacgtgacc 541 Query: 174 atggacggcgcgggcgcgatccagttcatccggacgtggacg 215 ||||||||| ||||||| |||| ||||||| ||| |||||| Sbjct: 542 atggacggcatgggcgcgttccacttcatccagacatggacg 583
>gb|AE009748.1|AE009748 Pyrobaculum aerophilum strain IM2 section 3 of 201 of the complete genome Length = 10337 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 ctgaagtgcggcggcgtggcc 146 ||||||||||||||||||||| Sbjct: 7518 ctgaagtgcggcggcgtggcc 7498
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gcgcgcgggctggacgccgcg 242 ||||||||||||||||||||| Sbjct: 4237645 gcgcgcgggctggacgccgcg 4237625
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cggcgcgggcgcgatccagt 198 |||||||||||||||||||| Sbjct: 248182 cggcgcgggcgcgatccagt 248163
>gb|BT009059.1| Triticum aestivum clone wdr1f.pk003.e4:fis, full insert mRNA sequence Length = 1619 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 cgaccctggcgcgcgggctggacg 237 ||||||||||||| |||||||||| Sbjct: 337 cgaccctggcgcgggggctggacg 360
>gb|AC104538.2| Homo sapiens chromosome 19 clone CTB-66B24, complete sequence Length = 54423 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 caacggcctgccccgcccct 363 |||||||||||||||||||| Sbjct: 8419 caacggcctgccccgcccct 8400
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cctggcgcgcgggctggacg 237 |||||||||||||||||||| Sbjct: 1342292 cctggcgcgcgggctggacg 1342273
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cgcacggtgctgcgcgcgcg 292 |||||||||||||||||||| Sbjct: 2204514 cgcacggtgctgcgcgcgcg 2204495
>emb|BX950850.1| Gallus gallus finished cDNA, clone ChEST675f4 Length = 765 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 agtgcggcggcgtggccgtg 149 |||||||||||||||||||| Sbjct: 334 agtgcggcggcgtggccgtg 353
>emb|BX934261.1| Gallus gallus finished cDNA, clone ChEST49n15 Length = 765 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 agtgcggcggcgtggccgtg 149 |||||||||||||||||||| Sbjct: 334 agtgcggcggcgtggccgtg 353
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ctggcgcgcgggctggacgc 238 |||||||||||||||||||| Sbjct: 1585102 ctggcgcgcgggctggacgc 1585121
>gb|AC011444.5|AC011444 Homo sapiens chromosome 19 clone CTC-232P5, complete sequence Length = 133925 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 caacggcctgccccgcccct 363 |||||||||||||||||||| Sbjct: 25414 caacggcctgccccgcccct 25433
>emb|AJ542504.1|ZMA542504 Zea mays rpl5 gene for mitochondrial ribosomal protein L5, exons 1-2 Length = 3558 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 gcggcgtggccgtgggcacgggca 159 |||||||| ||||||||||||||| Sbjct: 118 gcggcgtgtccgtgggcacgggca 95
>ref|NM_212183.1| Eremothecium gossypii AFR500Wp (AFR500W), mRNA Length = 1521 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cctggcgcgcgggctggacg 237 |||||||||||||||||||| Sbjct: 1320 cctggcgcgcgggctggacg 1301
>gb|AC147443.4| Gallus gallus BAC clone CH261-18C16 from chromosome unknown, complete sequence Length = 205143 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 agtgcggcggcgtggccgtg 149 |||||||||||||||||||| Sbjct: 129429 agtgcggcggcgtggccgtg 129448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,589,556 Number of Sequences: 3902068 Number of extensions: 2589556 Number of successful extensions: 53717 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53074 Number of HSP's gapped (non-prelim): 642 length of query: 482 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 460 effective length of database: 17,147,199,772 effective search space: 7887711895120 effective search space used: 7887711895120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
