ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06f05 |
|---|---|
| Clone Library Name | barley_pub |
>HM13_MOUSE (Q9D8V0) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal| peptide peptidase) (Presenilin-like protein 3) Length = 378 Score = 31.6 bits (70), Expect = 1.1 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%) Frame = +3 Query: 345 ACLTVYVGCYRSVK------STPPAETMSKEHAMRFPLVGSAMLLSLF 470 A L ++ G RSV+ S+ ET++ A RFP++ S LL L+ Sbjct: 43 ALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLY 90
>DHYS_METJA (Q58224) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)| Length = 330 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -3 Query: 332 IQIWVHIDNKRCQAQTSKSQVGSTLMCLHSSARWFLSLLLAQELQTVVFLVAGGVE 165 I+IW HI+ KR + G T + S R ++ L+ + ++ AGGVE Sbjct: 46 IKIWKHIEEKRKKGDEITVFFGYTSNIVSSGLREIIAYLVKHKKIDIIVTTAGGVE 101
>P2RY2_HUMAN (P41231) P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1) (P2U1) (ATP| receptor) (Purinergic receptor) Length = 377 Score = 25.0 bits (53), Expect(2) = 1.6 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +2 Query: 161 ASPPRRRLGTRQSEAPELTR 220 A+P RRRLG R+S+ ++ R Sbjct: 329 ATPARRRLGLRRSDRTDMQR 348 Score = 24.6 bits (52), Expect(2) = 1.6 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 31 SRIPKPPSGPTPAT 72 +R KPP+GP+PAT Sbjct: 317 ARDAKPPTGPSPAT 330
>HM13_HUMAN (Q8TCT9) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal| peptide peptidase) (Presenilin-like protein 3) (hIMP1 protein) Length = 377 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%) Frame = +3 Query: 345 ACLTVYVGCYRSVK------STPPAETMSKEHAMRFPLVGSAMLLSLF 470 A L ++ G RSV+ ++ ET++ A RFP++ S LL L+ Sbjct: 43 ALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLY 90
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 30.4 bits (67), Expect = 2.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 10 PRVTREPSRIPKPPSGPTPATT 75 P V +EP+ +P PP PTP +T Sbjct: 571 PPVPQEPAPVPSPPRAPTPPST 592
>RGA2_YEAST (Q06407) Rho-type GTPase-activating protein 2| Length = 1009 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = +2 Query: 284 WFELGTACYQCEPKFECDTDSMSYCLCGLLPFCQVD--STC*DXVQGACYAVPIGGECYA 457 W + CY+C+ K D+D + + L+ + D + C D + +P E Y Sbjct: 33 WHDQCFTCYKCDKKLNADSDFLVLDIGTLICYDCSDKCTNCGDKIDDTAIILPSSNEAYC 92 Query: 458 S 460 S Sbjct: 93 S 93
>STAP2_HUMAN (Q9UGK3) Signal-transducing adaptor protein 2 (STAP-2) (Breast| tumor kinase substrate) (BRK substrate) Length = 403 Score = 29.3 bits (64), Expect = 5.3 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = +1 Query: 7 PPRVTREPSRIPKPPSGPTP 66 P ++ + P+++PKPP GP P Sbjct: 338 PKKLPKPPAKLPKPPVGPKP 357
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 29.3 bits (64), Expect = 5.3 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Frame = +2 Query: 263 CCQLGSCWFELGTACYQCEPKF---ECDTDSMSYCLCGLLPFCQVDSTC*DXVQGACYAV 433 C GSC + T QC P F +C TD M+ CL C+ TC D V Sbjct: 918 CQNGGSCVDHVNTFSCQCHPGFIGDKCQTD-MNECLS---EPCKNGGTCSDYVNSYTCTC 973 Query: 434 PIG 442 P G Sbjct: 974 PAG 976
>CARD9_HUMAN (Q9H257) Caspase recruitment domain-containing protein 9 (hCARD9)| Length = 536 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 172 GWRRGAPAREDGTGRDGTATE 110 GWR+G RE+ TG D T TE Sbjct: 514 GWRQGEEDRENTTGSDNTDTE 534
>ACV1B_RAT (P80202) Activin receptor type 1B precursor (EC 2.7.11.30)| (ACTR-IB) (Serine/threonine-protein kinase receptor R2) (SKR2) Length = 505 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +2 Query: 170 PRRRLGTRQSEAPELTRGTKTIELKNEDT*ACCQ---LGSCWFELGTAC 307 P +R+GT++ APE+ +TI +K+ D+ C LG ++E+ C Sbjct: 371 PNQRVGTKRYMAPEVL--DETINMKHFDSFKCADIYALGLVYWEIARRC 417
>ACV1B_MOUSE (Q61271) Activin receptor type 1B precursor (EC 2.7.11.30)| (ACTR-IB) (Serine/threonine-protein kinase receptor R2) (SKR2) Length = 505 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +2 Query: 170 PRRRLGTRQSEAPELTRGTKTIELKNEDT*ACCQ---LGSCWFELGTAC 307 P +R+GT++ APE+ +TI +K+ D+ C LG ++E+ C Sbjct: 371 PNQRVGTKRYMAPEVL--DETINMKHFDSFKCADIYALGLVYWEIARRC 417
>ACV1B_HUMAN (P36896) Activin receptor type 1B precursor (EC 2.7.11.30)| (ACTR-IB) (Serine/threonine-protein kinase receptor R2) (SKR2) (Activin receptor-like kinase 4) (ALK-4) Length = 505 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +2 Query: 170 PRRRLGTRQSEAPELTRGTKTIELKNEDT*ACCQ---LGSCWFELGTAC 307 P +R+GT++ APE+ +TI +K+ D+ C LG ++E+ C Sbjct: 371 PNQRVGTKRYMAPEVL--DETINMKHFDSFKCADIYALGLVYWEIARRC 417 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,920,969 Number of Sequences: 219361 Number of extensions: 933688 Number of successful extensions: 3542 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3534 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
