ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06f04 |
|---|---|
| Clone Library Name | barley_pub |
>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog| Length = 194 Score = 52.8 bits (125), Expect = 6e-07 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 10/125 (8%) Frame = +2 Query: 173 VALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GI-QAAPAGA 331 V LNVYD+ + S+ +G ++H+G+ VYG E+ +GG GI + +P A Sbjct: 7 VVLNVYDMY-WMNEYTSSIGIG-----VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60 Query: 332 TQYGRPVR---VVDLGVTHLPREVFEDYLRDIAPRYTAATYSLLTHNCXNFTNEVAQFLV 502 ++ G + V LG T + E + ++ Y Y L+ NC +F++ +++ L Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120 Query: 503 GAGIP 517 G IP Sbjct: 121 GKEIP 125
>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog| Length = 194 Score = 52.8 bits (125), Expect = 6e-07 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 10/125 (8%) Frame = +2 Query: 173 VALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GI-QAAPAGA 331 V LNVYD+ + S+ +G ++H+G+ VYG E+ +GG GI + +P A Sbjct: 7 VVLNVYDMY-WMNEYTSSIGIG-----VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60 Query: 332 TQYGRPVR---VVDLGVTHLPREVFEDYLRDIAPRYTAATYSLLTHNCXNFTNEVAQFLV 502 ++ G + V LG T + E + ++ Y Y L+ NC +F++ +++ L Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120 Query: 503 GAGIP 517 G IP Sbjct: 121 GKEIP 125
>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146| Length = 194 Score = 52.8 bits (125), Expect = 6e-07 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 10/125 (8%) Frame = +2 Query: 173 VALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GI-QAAPAGA 331 V LNVYD+ + S+ +G ++H+G+ VYG E+ +GG GI + +P A Sbjct: 7 VVLNVYDMY-WMNEYTSSIGIG-----VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60 Query: 332 TQYGRPVR---VVDLGVTHLPREVFEDYLRDIAPRYTAATYSLLTHNCXNFTNEVAQFLV 502 ++ G + V LG T + E + ++ Y Y L+ NC +F++ +++ L Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILC 120 Query: 503 GAGIP 517 G IP Sbjct: 121 GKEIP 125
>HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1| Length = 201 Score = 52.8 bits (125), Expect = 6e-07 Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 8/126 (6%) Frame = +2 Query: 170 KVALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGGGIQAAPAG--ATQYG 343 KV +NVYDL LG I+HTG+V+ G EY FG G AT Sbjct: 2 KVYINVYDLMPDSPVNKLAWTLGL---GIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPR 58 Query: 344 RPVR------VVDLGVTHLPREVFEDYLRDIAPRYTAATYSLLTHNCXNFTNEVAQFLVG 505 P+ + L LP+ + L ++ +T +YSLL NC +FTN A L G Sbjct: 59 PPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTG 118 Query: 506 AGIPDY 523 + IP + Sbjct: 119 SPIPSF 124
>CG146_ARATH (Q93VG8) UPF0326 protein At4g17486| Length = 224 Score = 50.4 bits (119), Expect = 3e-06 Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 8/125 (6%) Frame = +2 Query: 173 VALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGGGIQAAPAGATQYGRPV 352 V LNVYDL+ + L +G I+H+G+ + EY +G P P Sbjct: 28 VYLNVYDLTP-VNNYLYWFGIG-----IFHSGIEAHNLEYCYGA--HEYPTSGVYEVEPR 79 Query: 353 --------RVVDLGVTHLPREVFEDYLRDIAPRYTAATYSLLTHNCXNFTNEVAQFLVGA 508 R V LG T + R F Y+ ++ +Y TY L+ NC +FT EV L G Sbjct: 80 NCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGK 139 Query: 509 GIPDY 523 IP + Sbjct: 140 PIPGW 144
>DED1_CRYNE (Q5KN36) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 637 Score = 35.8 bits (81), Expect = 0.073 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Frame = -3 Query: 378 WVTPRSTTRTGRPYCVAPAG-AAWIPPPKKYSFPYTTTPVCQMASMGLPRKDVESWRARP 202 +V P R P V PA AA+ P P P TT P + + DV W A+P Sbjct: 30 YVPPHLRNRAAPPAAVPPAAPAAYRPSPTGLPTPATTPPTRHIVPAAVAEDDVGGWGAQP 89 Query: 201 LLR 193 +R Sbjct: 90 RVR 92
>INVO_GALCR (P24710) Involucrin| Length = 384 Score = 35.4 bits (80), Expect = 0.096 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Frame = -2 Query: 286 VPVHHHARVPDGLDGLAEEGCGELARE---AVAQVVDVERHLVPLLRHYRLGNRREPRRF 116 VP H + D + G+ E+ CG+ E Q V + + P LG + EP Sbjct: 55 VPSKHEEKGTDPVKGVLEQECGQQEPELHLGKQQDVHLMKRQDPQEPELHLGKQPEPEGP 114 Query: 115 EPNLGEED--------DAAAGKERQQE 59 EP+LG+E + GK++QQE Sbjct: 115 EPHLGKEQQHQESQDPELHLGKQQQQE 141
>MET17_YEAST (P06106) Protein MET17 [Includes: O-acetylhomoserine sulfhydrylase| (EC 2.5.1.49) (OAH sulfhydrylase) (Homocysteine synthase); O-acetylserine sulfhydrylase (EC 2.5.1.47) (OAS sulfhydrylase)] Length = 443 Score = 31.2 bits (69), Expect = 1.8 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Frame = +2 Query: 110 RLESPRLSAIPQAIMAEEGHKVALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNE 289 R ++P + + + I A EG AL V S+G A Q I+ + HTG + Sbjct: 57 RFQNPTSNVLEERIAALEGGAAALAV---SSGQAAQTLA------IQGLAHTGDNIVSTS 107 Query: 290 YFFGGGIQAAPAGATQYGRPVRVVDLGVTHLPREVFED-----YLRDIA-PRYTAATY 445 Y +GG ++G R V+ +VF++ YL I P+Y + Sbjct: 108 YLYGGTYNQFKISFKRFGIEARFVEGDNPEEFEKVFDERTKAVYLETIGNPKYNVPDF 165
>UVRB_MYCTU (P67422) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 698 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Frame = +2 Query: 299 GGGIQAAPAGATQYGRPVRVVDLGV------THLPREVFEDYLRDIAPRYTAATYSLLTH 460 GG + A G G P R V GV + +PR D ++D+ + AA L Sbjct: 614 GGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFE 673 Query: 461 NCXNFTNEVA 490 F +E+A Sbjct: 674 LAARFRDEIA 683
>UVRB_MYCBO (P67423) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 698 Score = 30.4 bits (67), Expect = 3.1 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Frame = +2 Query: 299 GGGIQAAPAGATQYGRPVRVVDLGV------THLPREVFEDYLRDIAPRYTAATYSLLTH 460 GG + A G G P R V GV + +PR D ++D+ + AA L Sbjct: 614 GGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFE 673 Query: 461 NCXNFTNEVA 490 F +E+A Sbjct: 674 LAARFRDEIA 683
>LOLD_VIBCH (P57066) Lipoprotein-releasing system ATP-binding protein lolD| Length = 228 Score = 30.4 bits (67), Expect = 3.1 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +2 Query: 140 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 235 P ++A+E HK AL++YDL L R+ T+FL Sbjct: 163 PDLVLADEPTGNLDHKTALSIYDLMRELNRESGTAFL 199
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -2 Query: 148 RLGNRREPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEERAEQSRDR 2 R+ +RR+ R E + E D +ER++E+ R R + E E++R+R Sbjct: 667 RVDDRRDERARERDRERERDRERERERERERDREREKERELERERARER 715
>POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease| 2) Length = 875 Score = 30.0 bits (66), Expect = 4.0 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = -2 Query: 373 DAQVDDPHGAAVLXXXXXXRLDPAPEEVLVPVHHHARVPDGLDGLAEEGCGELAREAVAQ 194 +A D A+L L AP V +P H H +P LA G GELA + AQ Sbjct: 420 NASRDFASDLALLQLRTRVNLTAAPSAVCLPHHEHYFLPGSHCRLARWGRGELAPGSSAQ 479 Query: 193 V 191 + Sbjct: 480 L 480
>LOLD_VIBVY (Q7MJ01) Lipoprotein-releasing system ATP-binding protein lolD| Length = 227 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = +2 Query: 140 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 235 P ++A+E HK AL +YDL L R+ T+FL Sbjct: 163 PALVLADEPTGNLDHKTALQIYDLMRELNRESGTAFL 199
>LOLD_VIBVU (Q8DAV6) Lipoprotein-releasing system ATP-binding protein lolD| Length = 227 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = +2 Query: 140 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 235 P ++A+E HK AL +YDL L R+ T+FL Sbjct: 163 PALVLADEPTGNLDHKTALQIYDLMRELNRESGTAFL 199
>GLGA2_RHIME (P58394) Glycogen synthase 2 (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase 2) Length = 486 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +2 Query: 233 LGKPIEAIWHTGVVVYGNEYFFGGGIQAAPA 325 LG P EA GV YG+ F GG+QAA A Sbjct: 179 LGLPAEAYSIDGVEYYGDIGFLKGGLQAADA 209
>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor| Length = 910 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 Query: 118 FEPNLGEEDDAAAGKERQQEQGRTRARIWEERAEQSRD 5 FE + ++ +A A +ERQQE+G WEE + S + Sbjct: 429 FEGSKTQDIEAEASEERQQERGNPVIAQWEEVEDASEE 466
>CT075_MOUSE (P59383) Protein C20orf75 homolog precursor| Length = 733 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = -3 Query: 282 PYTTTPVCQMAS--MGLPRKDVESWRARPLLRS*TLSATLCPSSAIIAWGIAESRG 121 P TT VC +A+ GL + WR + T PSS +I WG+ + G Sbjct: 639 PGTTYHVCVLAANRAGLSQSQTSGWRRS------CATFTTKPSSVVIFWGLCTASG 688
>UVRB_MYCLE (P57991) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 698 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Frame = +2 Query: 299 GGGIQAAPAGATQYGRPVRVVDLGVTH------LPREVFEDYLRDIAPRYTAATYSLLTH 460 GG + G PVR V +GV +PR D ++D+ + AA L Sbjct: 614 GGSGRNVSRGRRAQSEPVRSVSVGVFEGRDTAGMPRAELADLIKDLTAQMMAAASDLQFE 673 Query: 461 NCXNFTNEVA 490 F +E+A Sbjct: 674 LAARFRDEIA 683
>PCRB_BACSU (O34790) Protein pcrB homolog| Length = 228 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +2 Query: 245 IEAIWHTGVVVYGNEYFFGGGIQAAPAGATQYGRPVRVVDLGVTHLPREVFEDYLR 412 IEA+ T V+ + F+GGGI+ A A QY V+ +G V+ED+ R Sbjct: 168 IEAVKKTKAVLETSTLFYGGGIKDAET-AKQYAEHADVIVVG-----NAVYEDFDR 217
>PHS_PELLD (Q3B6N5) Putative pterin-4-alpha-carbinolamine dehydratase (EC| 4.2.1.96) (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) Length = 114 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -2 Query: 256 DGLDGLAEEGCGELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAG 77 +GL LAE EL +E V+ E + L+R + N RE F ++GE ++ Sbjct: 14 EGLPPLAERESEELLKEIPEWVIVSEDGVSRLVRTFTFENFREAMAFAGSVGELAESEQH 73 Query: 76 KER-QQEQGRTRARIW 32 + E G+ R W Sbjct: 74 HPKLVTEWGKVRVEWW 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,860,491 Number of Sequences: 219361 Number of extensions: 993845 Number of successful extensions: 4197 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4002 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4178 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
