Clone Name | bart06f04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, complete sequence Length = 984 Score = 408 bits (206), Expect = e-111 Identities = 322/361 (89%) Strand = Plus / Plus Query: 150 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 209 ||||||||||||||||| |||||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 116 taatggcggaggaggggtacaaggtgacgctgaacgtgtacgacctcagcaacggcctcg 175 Query: 210 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacacgggcg 269 |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 cgcggcagctgtccacctccttcctcggcaagcccatcgaggccatctggcacacgggcg 235 Query: 270 tggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcggcgccggcggggg 329 |||||||||||||||||||||||| |||||| |||||||||||| || |||| |||||| Sbjct: 236 tggtggtgtacgggaacgagtactacttcggcggcgggatccagtcgtcgcccgcgggga 295 Query: 330 cgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcacccacctcccccgcg 389 |||||| |||||| ||||| ||||| || || ||||||||||| ||| |||| |||| Sbjct: 296 cgacgccgtacgggcgcccgctgcggacggtggagctgggcgtcacgcacatcccgcgcg 355 Query: 390 aggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccgccacatacagcc 449 |||| ||||||||||||||||||||||||||||| || ||||| |||| || ||| ||| Sbjct: 356 aggtgttcgaggactacctccgcgacatcgcgccccggtacacggccgagacctaccgcc 415 Query: 450 tgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcggcgccg 509 ||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||| ||| Sbjct: 416 tgctcacccacaactgcaacaacttcagccacgaggtggcgcagttcctcgtcggcaccg 475 Query: 510 g 510 | Sbjct: 476 g 476
>ref|XM_468370.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1099 Score = 341 bits (172), Expect = 1e-90 Identities = 324/375 (86%) Strand = Plus / Plus Query: 150 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 209 ||||||||||||| ||| ||||||| | || ||||| |||||||| ||||||||||||| Sbjct: 151 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 210 Query: 210 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacacgggcg 269 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 211 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggcatacgggcg 270 Query: 270 tggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcggcgccggcggggg 329 ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||| Sbjct: 271 tggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgctggcggcgggga 330 Query: 330 cgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcacccacctcccccgcg 389 ||||| |||||| || || |||||||| || || |||||| || ||| |||| || | Sbjct: 331 ggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgcacatcccgcggg 390 Query: 390 aggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccgccacatacagcc 449 |||| |||||||||||||||||||||||| ||||||| ||||| || | || ||| | | Sbjct: 391 aggtgttcgaggactacctccgcgacatctcgccgcggtacacggcggagacgtaccggc 450 Query: 450 tgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcggcgccg 509 |||||| |||||||||| ||||||||| ||||||||| ||||| |||||||||||||||| Sbjct: 451 tgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcctcgtcggcgccg 510 Query: 510 ggataccggactaca 524 | || || ||||||| Sbjct: 511 gcatccccgactaca 525
>ref|XM_507547.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37 mRNA Length = 1151 Score = 341 bits (172), Expect = 1e-90 Identities = 324/375 (86%) Strand = Plus / Plus Query: 150 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 209 ||||||||||||| ||| ||||||| | || ||||| |||||||| ||||||||||||| Sbjct: 129 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 188 Query: 210 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacacgggcg 269 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 189 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggcatacgggcg 248 Query: 270 tggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcggcgccggcggggg 329 ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||| Sbjct: 249 tggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgctggcggcgggga 308 Query: 330 cgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcacccacctcccccgcg 389 ||||| |||||| || || |||||||| || || |||||| || ||| |||| || | Sbjct: 309 ggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgcacatcccgcggg 368 Query: 390 aggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccgccacatacagcc 449 |||| |||||||||||||||||||||||| ||||||| ||||| || | || ||| | | Sbjct: 369 aggtgttcgaggactacctccgcgacatctcgccgcggtacacggcggagacgtaccggc 428 Query: 450 tgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcggcgccg 509 |||||| |||||||||| ||||||||| ||||||||| ||||| |||||||||||||||| Sbjct: 429 tgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcctcgtcggcgccg 488 Query: 510 ggataccggactaca 524 | || || ||||||| Sbjct: 489 gcatccccgactaca 503
>ref|XM_507041.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37 mRNA Length = 1218 Score = 341 bits (172), Expect = 1e-90 Identities = 324/375 (86%) Strand = Plus / Plus Query: 150 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 209 ||||||||||||| ||| ||||||| | || ||||| |||||||| ||||||||||||| Sbjct: 154 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 213 Query: 210 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacacgggcg 269 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 214 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggcatacgggcg 273 Query: 270 tggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcggcgccggcggggg 329 ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||| Sbjct: 274 tggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgctggcggcgggga 333 Query: 330 cgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcacccacctcccccgcg 389 ||||| |||||| || || |||||||| || || |||||| || ||| |||| || | Sbjct: 334 ggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgcacatcccgcggg 393 Query: 390 aggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccgccacatacagcc 449 |||| |||||||||||||||||||||||| ||||||| ||||| || | || ||| | | Sbjct: 394 aggtgttcgaggactacctccgcgacatctcgccgcggtacacggcggagacgtaccggc 453 Query: 450 tgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcggcgccg 509 |||||| |||||||||| ||||||||| ||||||||| ||||| |||||||||||||||| Sbjct: 454 tgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcctcgtcggcgccg 513 Query: 510 ggataccggactaca 524 | || || ||||||| Sbjct: 514 gcatccccgactaca 528
>dbj|AK104442.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B11, full insert sequence Length = 1151 Score = 341 bits (172), Expect = 1e-90 Identities = 324/375 (86%) Strand = Plus / Plus Query: 150 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 209 ||||||||||||| ||| ||||||| | || ||||| |||||||| ||||||||||||| Sbjct: 129 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 188 Query: 210 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacacgggcg 269 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 189 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggcatacgggcg 248 Query: 270 tggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcggcgccggcggggg 329 ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||| Sbjct: 249 tggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgctggcggcgggga 308 Query: 330 cgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcacccacctcccccgcg 389 ||||| |||||| || || |||||||| || || |||||| || ||| |||| || | Sbjct: 309 ggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgcacatcccgcggg 368 Query: 390 aggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccgccacatacagcc 449 |||| |||||||||||||||||||||||| ||||||| ||||| || | || ||| | | Sbjct: 369 aggtgttcgaggactacctccgcgacatctcgccgcggtacacggcggagacgtaccggc 428 Query: 450 tgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcggcgccg 509 |||||| |||||||||| ||||||||| ||||||||| ||||| |||||||||||||||| Sbjct: 429 tgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcctcgtcggcgccg 488 Query: 510 ggataccggactaca 524 | || || ||||||| Sbjct: 489 gcatccccgactaca 503
>dbj|AK102943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114L12, full insert sequence Length = 1099 Score = 341 bits (172), Expect = 1e-90 Identities = 324/375 (86%) Strand = Plus / Plus Query: 150 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 209 ||||||||||||| ||| ||||||| | || ||||| |||||||| ||||||||||||| Sbjct: 151 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 210 Query: 210 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacacgggcg 269 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 211 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggcatacgggcg 270 Query: 270 tggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcggcgccggcggggg 329 ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||| Sbjct: 271 tggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgctggcggcgggga 330 Query: 330 cgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcacccacctcccccgcg 389 ||||| |||||| || || |||||||| || || |||||| || ||| |||| || | Sbjct: 331 ggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgcacatcccgcggg 390 Query: 390 aggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccgccacatacagcc 449 |||| |||||||||||||||||||||||| ||||||| ||||| || | || ||| | | Sbjct: 391 aggtgttcgaggactacctccgcgacatctcgccgcggtacacggcggagacgtaccggc 450 Query: 450 tgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcggcgccg 509 |||||| |||||||||| ||||||||| ||||||||| ||||| |||||||||||||||| Sbjct: 451 tgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcctcgtcggcgccg 510 Query: 510 ggataccggactaca 524 | || || ||||||| Sbjct: 511 gcatccccgactaca 525
>dbj|AK060071.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A06, full insert sequence Length = 1218 Score = 341 bits (172), Expect = 1e-90 Identities = 324/375 (86%) Strand = Plus / Plus Query: 150 taatggcggaggaggggcacaaggtggcgctcaacgtctacgacctgagcaacggcctcg 209 ||||||||||||| ||| ||||||| | || ||||| |||||||| ||||||||||||| Sbjct: 154 taatggcggaggaagggtacaaggttgttcttaacgtgtacgacctcagcaacggcctcg 213 Query: 210 cgcgccagctctccacatccttcctcggcaagcccatcgaggccatctggcacacgggcg 269 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 214 cgcggcagctctccacctccttcctcggcaagccaatcgaggccatctggcatacgggcg 273 Query: 270 tggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcggcgccggcggggg 329 ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||| Sbjct: 274 tggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgctggcggcgggga 333 Query: 330 cgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcacccacctcccccgcg 389 ||||| |||||| || || |||||||| || || |||||| || ||| |||| || | Sbjct: 334 ggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgcacatcccgcggg 393 Query: 390 aggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccgccacatacagcc 449 |||| |||||||||||||||||||||||| ||||||| ||||| || | || ||| | | Sbjct: 394 aggtgttcgaggactacctccgcgacatctcgccgcggtacacggcggagacgtaccggc 453 Query: 450 tgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcggcgccg 509 |||||| |||||||||| ||||||||| ||||||||| ||||| |||||||||||||||| Sbjct: 454 tgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcctcgtcggcgccg 513 Query: 510 ggataccggactaca 524 | || || ||||||| Sbjct: 514 gcatccccgactaca 528
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 214 bits (108), Expect = 2e-52 Identities = 227/267 (85%) Strand = Plus / Minus Query: 258 ggcacacgggcgtggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcgg 317 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct: 34899035 ggcatacgggcgtggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgc 34898976 Query: 318 cgccggcgggggcgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcaccc 377 | |||||||| ||||| |||||| || || |||||||| || || |||||| || | Sbjct: 34898975 tggcggcggggaggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgc 34898916 Query: 378 acctcccccgcgaggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccg 437 || |||| || ||||| |||||||||||||||||||||||| ||||||| ||||| || | Sbjct: 34898915 acatcccgcgggaggtgttcgaggactacctccgcgacatctcgccgcggtacacggcgg 34898856 Query: 438 ccacatacagcctgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcc 497 || ||| | ||||||| |||||||||| ||||||||| ||||||||| ||||| |||| Sbjct: 34898855 agacgtaccggctgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcc 34898796 Query: 498 tcgtcggcgccgggataccggactaca 524 ||||||||||||| || || ||||||| Sbjct: 34898795 tcgtcggcgccggcatccccgactaca 34898769 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Minus Query: 182 aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 241 ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 34899199 aacgtgtacgacctcagcaacggcctcgcgcggcagctctccacctccttcctcggcaag 34899140 Query: 242 cccatcgaggccatctgg 259 || ||||||||||||||| Sbjct: 34899139 ccaatcgaggccatctgg 34899122 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 182 aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 241 ||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||| Sbjct: 33509375 aacgtgtacgacctgagcaacagcctcgcgcggcagctctccacctccttcctccgcaag 33509316 Query: 242 cccatcgaggccatctgg 259 || ||||||||||||||| Sbjct: 33509315 ccaatcgaggccatctgg 33509298 Score = 75.8 bits (38), Expect = 1e-10 Identities = 125/154 (81%) Strand = Plus / Minus Query: 258 ggcacacgggcgtggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcgg 317 |||| ||||||||| |||||||||||||| ||||||| | ||| |||||||||||| || Sbjct: 33509204 ggcatacgggcgtgctggtgtacgggaacaagtacttgtacggcggcgggatccagtcgc 33509145 Query: 318 cgccggcgggggcgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcaccc 377 ||||| |||| ||| | |||||| || || |||||||| || || | |||||| || | Sbjct: 33509144 tgccggtggggaggacaccgtacgggcggccggtgcgggtggtggagccgggcgtgacgc 33509085 Query: 378 acctcccccgcgaggtcttcgaggactacctccg 411 || |||| || |||| |||||||||| |||||| Sbjct: 33509084 acatcccacgttaggtgttcgaggacttcctccg 33509051 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gctcaacgtctacgacctga 197 |||||||||||||||||||| Sbjct: 26490224 gctcaacgtctacgacctga 26490243 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cggcgtcgtcttcttctcca 104 |||||||||||||||||||| Sbjct: 21606638 cggcgtcgtcttcttctcca 21606657
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 214 bits (108), Expect = 2e-52 Identities = 227/267 (85%) Strand = Plus / Minus Query: 258 ggcacacgggcgtggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcgg 317 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct: 120630 ggcatacgggcgtggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgc 120571 Query: 318 cgccggcgggggcgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcaccc 377 | |||||||| ||||| |||||| || || |||||||| || || |||||| || | Sbjct: 120570 tggcggcggggaggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgc 120511 Query: 378 acctcccccgcgaggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccg 437 || |||| || ||||| |||||||||||||||||||||||| ||||||| ||||| || | Sbjct: 120510 acatcccgcgggaggtgttcgaggactacctccgcgacatctcgccgcggtacacggcgg 120451 Query: 438 ccacatacagcctgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcc 497 || ||| | ||||||| |||||||||| ||||||||| ||||||||| ||||| |||| Sbjct: 120450 agacgtaccggctgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcc 120391 Query: 498 tcgtcggcgccgggataccggactaca 524 ||||||||||||| || || ||||||| Sbjct: 120390 tcgtcggcgccggcatccccgactaca 120364 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Minus Query: 182 aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 241 ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 120794 aacgtgtacgacctcagcaacggcctcgcgcggcagctctccacctccttcctcggcaag 120735 Query: 242 cccatcgaggccatctgg 259 || ||||||||||||||| Sbjct: 120734 ccaatcgaggccatctgg 120717
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 214 bits (108), Expect = 2e-52 Identities = 227/267 (85%) Strand = Plus / Minus Query: 258 ggcacacgggcgtggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcgg 317 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct: 58532 ggcatacgggcgtggtggtgtacgggaacgagtacttcttcggcggcgggatccagtcgc 58473 Query: 318 cgccggcgggggcgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcaccc 377 | |||||||| ||||| |||||| || || |||||||| || || |||||| || | Sbjct: 58472 tggcggcggggaggacgccgtacgggcggccggtgcgggtggtggagatgggcgagacgc 58413 Query: 378 acctcccccgcgaggtcttcgaggactacctccgcgacatcgcgccgcgctacaccgccg 437 || |||| || ||||| |||||||||||||||||||||||| ||||||| ||||| || | Sbjct: 58412 acatcccgcgggaggtgttcgaggactacctccgcgacatctcgccgcggtacacggcgg 58353 Query: 438 ccacatacagcctgctcacccacaactgcnacaacttcaccaacgaggtcgcgcagttcc 497 || ||| | ||||||| |||||||||| ||||||||| ||||||||| ||||| |||| Sbjct: 58352 agacgtaccggctgctcagccacaactgcaacaacttcagcaacgaggtggcgcaattcc 58293 Query: 498 tcgtcggcgccgggataccggactaca 524 ||||||||||||| || || ||||||| Sbjct: 58292 tcgtcggcgccggcatccccgactaca 58266 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Minus Query: 182 aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 241 ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 58696 aacgtgtacgacctcagcaacggcctcgcgcggcagctctccacctccttcctcggcaag 58637 Query: 242 cccatcgaggccatctgg 259 || ||||||||||||||| Sbjct: 58636 ccaatcgaggccatctgg 58619
>ref|XM_468180.1| Oryza sativa (japonica cultivar-group), mRNA Length = 228 Score = 167 bits (84), Expect = 5e-38 Identities = 120/132 (90%) Strand = Plus / Plus Query: 182 aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 241 ||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||| Sbjct: 19 aacgtgtacgacctgagcaacagcctcgcgcggcagctctccacctccttcctccgcaag 78 Query: 242 cccatcgaggccatctggcacacgggcgtggtggtgtacgggaacgagtacttcttcggg 301 || ||||||||||||||||| ||||||||| |||||||||||||| ||||||| | ||| Sbjct: 79 ccaatcgaggccatctggcatacgggcgtgctggtgtacgggaacaagtacttgtacggc 138 Query: 302 ggcgggatccag 313 |||||||||||| Sbjct: 139 ggcgggatccag 150
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 182 aacgtctacgacctgagcaacggcctcgcgcgccagctctccacatccttcctcggcaag 241 ||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||| Sbjct: 84250 aacgtgtacgacctgagcaacagcctcgcgcggcagctctccacctccttcctccgcaag 84191 Query: 242 cccatcgaggccatctgg 259 || ||||||||||||||| Sbjct: 84190 ccaatcgaggccatctgg 84173 Score = 75.8 bits (38), Expect = 1e-10 Identities = 125/154 (81%) Strand = Plus / Minus Query: 258 ggcacacgggcgtggtggtgtacgggaacgagtacttcttcgggggcgggatccaggcgg 317 |||| ||||||||| |||||||||||||| ||||||| | ||| |||||||||||| || Sbjct: 84079 ggcatacgggcgtgctggtgtacgggaacaagtacttgtacggcggcgggatccagtcgc 84020 Query: 318 cgccggcgggggcgacgcagtacggccgccccgtgcgggtcgtcgacctgggcgtcaccc 377 ||||| |||| ||| | |||||| || || |||||||| || || | |||||| || | Sbjct: 84019 tgccggtggggaggacaccgtacgggcggccggtgcgggtggtggagccgggcgtgacgc 83960 Query: 378 acctcccccgcgaggtcttcgaggactacctccg 411 || |||| || |||| |||||||||| |||||| Sbjct: 83959 acatcccacgttaggtgttcgaggacttcctccg 83926
>ref|NM_111589.3| Arabidopsis thaliana unknown protein AT3G07090 mRNA, complete cds Length = 990 Score = 54.0 bits (27), Expect = 5e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 458 cacaactgcnacaacttcaccaacgaggtcgcgcagtt 495 ||||||||| ||||||||| |||||||||||| ||||| Sbjct: 400 cacaactgcaacaacttcagcaacgaggtcgctcagtt 437
>ref|NM_196968.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0094K03.5), mRNA Length = 1201 Score = 54.0 bits (27), Expect = 5e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 459 acaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcgg 504 |||||||| ||||||||||||| || | |||||| ||||||||||| Sbjct: 533 acaactgcaacaacttcaccaatgaagccgcgcaattcctcgtcgg 578 Score = 40.1 bits (20), Expect = 7.1 Identities = 62/76 (81%) Strand = Plus / Plus Query: 231 tcctcggcaagcccatcgaggccatctggcacacgggcgtggtggtgtacgggaacgagt 290 |||| |||||| | || ||||| || ||||| || || ||||| || |||||||| |||| Sbjct: 305 tccttggcaaggctattgaggcaatttggcatacaggggtggtagtctacgggaaggagt 364 Query: 291 acttcttcgggggcgg 306 ||||||| || ||||| Sbjct: 365 acttctttggcggcgg 380
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete sequence Length = 99128 Score = 54.0 bits (27), Expect = 5e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 458 cacaactgcnacaacttcaccaacgaggtcgcgcagtt 495 ||||||||| ||||||||| |||||||||||| ||||| Sbjct: 91051 cacaactgcaacaacttcagcaacgaggtcgctcagtt 91088
>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequence Length = 90142 Score = 54.0 bits (27), Expect = 5e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 458 cacaactgcnacaacttcaccaacgaggtcgcgcagtt 495 ||||||||| ||||||||| |||||||||||| ||||| Sbjct: 82825 cacaactgcaacaacttcagcaacgaggtcgctcagtt 82788
>gb|AY142656.1| Arabidopsis thaliana unknown protein (At3g07090) mRNA, complete cds Length = 828 Score = 54.0 bits (27), Expect = 5e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 458 cacaactgcnacaacttcaccaacgaggtcgcgcagtt 495 ||||||||| ||||||||| |||||||||||| ||||| Sbjct: 307 cacaactgcaacaacttcagcaacgaggtcgctcagtt 344
>gb|AY065383.1| Arabidopsis thaliana unknown protein (At3g07090) mRNA, complete cds Length = 939 Score = 54.0 bits (27), Expect = 5e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 458 cacaactgcnacaacttcaccaacgaggtcgcgcagtt 495 ||||||||| ||||||||| |||||||||||| ||||| Sbjct: 402 cacaactgcaacaacttcagcaacgaggtcgctcagtt 439
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 5e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 459 acaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcgg 504 |||||||| ||||||||||||| || | |||||| ||||||||||| Sbjct: 17031914 acaactgcaacaacttcaccaatgaagccgcgcaattcctcgtcgg 17031959 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 cgcgccgcgctacaccgccgccac 441 ||||||||||| |||||||||||| Sbjct: 10960196 cgcgccgcgctccaccgccgccac 10960173
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete sequence Length = 135216 Score = 54.0 bits (27), Expect = 5e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 459 acaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcgg 504 |||||||| ||||||||||||| || | |||||| ||||||||||| Sbjct: 72406 acaactgcaacaacttcaccaatgaagccgcgcaattcctcgtcgg 72451
>dbj|AK121929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106J23, full insert sequence Length = 1063 Score = 54.0 bits (27), Expect = 5e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 459 acaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcgg 504 |||||||| ||||||||||||| || | |||||| ||||||||||| Sbjct: 395 acaactgcaacaacttcaccaatgaagccgcgcaattcctcgtcgg 440 Score = 40.1 bits (20), Expect = 7.1 Identities = 62/76 (81%) Strand = Plus / Plus Query: 231 tcctcggcaagcccatcgaggccatctggcacacgggcgtggtggtgtacgggaacgagt 290 |||| |||||| | || ||||| || ||||| || || ||||| || |||||||| |||| Sbjct: 167 tccttggcaaggctattgaggcaatttggcatacaggggtggtagtctacgggaaggagt 226 Query: 291 acttcttcgggggcgg 306 ||||||| || ||||| Sbjct: 227 acttctttggcggcgg 242
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 5e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 459 acaactgcnacaacttcaccaacgaggtcgcgcagttcctcgtcgg 504 |||||||| ||||||||||||| || | |||||| ||||||||||| Sbjct: 17040954 acaactgcaacaacttcaccaatgaagccgcgcaattcctcgtcgg 17040999 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 cgcgccgcgctacaccgccgccac 441 ||||||||||| |||||||||||| Sbjct: 10966236 cgcgccgcgctccaccgccgccac 10966213
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 69 cgttcctttccggcggcggcgtcgtcttc 97 ||||||| ||||||||||||||||||||| Sbjct: 25939795 cgttcctctccggcggcggcgtcgtcttc 25939767
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 69 cgttcctttccggcggcggcgtcgtcttc 97 ||||||| ||||||||||||||||||||| Sbjct: 94893 cgttcctctccggcggcggcgtcgtcttc 94865
>ref|XM_550107.1| Oryza sativa (japonica cultivar-group), mRNA Length = 891 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 78 ccggcggcggcgtcgtcttcttctcc 103 ||||||||||| |||||||||||||| Sbjct: 748 ccggcggcggcatcgtcttcttctcc 723
>gb|AE008747.1| Salmonella typhimurium LT2, section 51 of 220 of the complete genome Length = 23306 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 cctcccagatccgcgcgcgcgt 49 |||||||||||||||||||||| Sbjct: 2759 cctcccagatccgcgcgcgcgt 2738
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 78 ccggcggcggcgtcgtcttcttctcc 103 ||||||||||| |||||||||||||| Sbjct: 2400088 ccggcggcggcatcgtcttcttctcc 2400113 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctttccggcggcggcgtcgt 93 |||||||||||||||||||| Sbjct: 18500886 ctttccggcggcggcgtcgt 18500867
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 cctcccagatccgcgcgcgcgt 49 |||||||||||||||||||||| Sbjct: 1826559 cctcccagatccgcgcgcgcgt 1826580
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 78 ccggcggcggcgtcgtcttcttctcc 103 ||||||||||| |||||||||||||| Sbjct: 129138 ccggcggcggcatcgtcttcttctcc 129163
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 cctcccagatccgcgcgcgcgt 49 |||||||||||||||||||||| Sbjct: 1900013 cctcccagatccgcgcgcgcgt 1900034
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 cctcccagatccgcgcgcgcgt 49 |||||||||||||||||||||| Sbjct: 1152378 cctcccagatccgcgcgcgcgt 1152357
>emb|AL627269.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 5/20 Length = 254050 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 cctcccagatccgcgcgcgcgt 49 |||||||||||||||||||||| Sbjct: 27800 cctcccagatccgcgcgcgcgt 27779
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 418 cgcgccgcgctacaccgccgccaca 442 |||||||||| |||||||||||||| Sbjct: 137553 cgcgccgcgcaacaccgccgccaca 137529
>gb|DQ217769.1| Vaccinium uliginosum isolate YC 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 761 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gcgtcacccacctcccccgcg 389 ||||||||||||||||||||| Sbjct: 479 gcgtcacccacctcccccgcg 499
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 487 cgcgcagttcctcgtcggcgccgggatac 515 ||||||| |||||||||||||||||||| Sbjct: 3562433 cgcgcagcgcctcgtcggcgccgggatac 3562405
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 418 cgcgccgcgctacaccgccgccaca 442 |||||||||| |||||||||||||| Sbjct: 982356 cgcgccgcgcaacaccgccgccaca 982332
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 487 cgcgcagttcctcgtcggcgccgggatac 515 ||||||| |||||||||||||||||||| Sbjct: 99865 cgcgcagcgcctcgtcggcgccgggatac 99837
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 487 cgcgcagttcctcgtcggcgccgggatac 515 ||||||| |||||||||||||||||||| Sbjct: 79073 cgcgcagcgcctcgtcggcgccgggatac 79045
>gb|AF382743.1|AF382742S2 Vaccinium vitis-idaea internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 454 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gcgtcacccacctcccccgcg 389 ||||||||||||||||||||| Sbjct: 230 gcgtcacccacctcccccgcg 250
>gb|AF382730.1| Vaccinium macrocarpon internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 644 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gcgtcacccacctcccccgcg 389 ||||||||||||||||||||| Sbjct: 420 gcgtcacccacctcccccgcg 440
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 418 cgcgccgcgctacaccgccgccaca 442 |||||||||| |||||||||||||| Sbjct: 982354 cgcgccgcgcaacaccgccgccaca 982330
>gb|AC016699.10| Homo sapiens BAC clone RP11-173M4 from 2, complete sequence Length = 54480 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 390 aggtcttcgaggactacctccgcgacatc 418 |||| ||||||||||||||||||| |||| Sbjct: 6923 aggttttcgaggactacctccgcgccatc 6895
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 418 cgcgccgcgctacaccgccgccaca 442 |||||||||| |||||||||||||| Sbjct: 2571 cgcgccgcgcaacaccgccgccaca 2547
>dbj|AK062714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C06, full insert sequence Length = 534 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 76 ttccggcggcggcgtcgtcttcttctcca 104 |||||||||||||||||||| || ||||| Sbjct: 277 ttccggcggcggcgtcgtctcctcctcca 305
>ref|XM_482196.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1146 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ttccggcggcggcgtcgtct 95 |||||||||||||||||||| Sbjct: 1109 ttccggcggcggcgtcgtct 1128
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ttccggcggcggcgtcgtct 95 |||||||||||||||||||| Sbjct: 1088 ttccggcggcggcgtcgtct 1107
>ref|XM_476120.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 675 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cggcggcggcgtcgtcttct 98 |||||||||||||||||||| Sbjct: 664 cggcggcggcgtcgtcttct 645
>ref|XM_467112.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1106 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gctcaacgtctacgacctga 197 |||||||||||||||||||| Sbjct: 99 gctcaacgtctacgacctga 118
>ref|XM_527971.1| PREDICTED: Pan troglodytes similar to Unc4.1 homeobox (LOC472597), mRNA Length = 2277 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 gcgccgcgctacaccgccgccaca 442 |||||||||| ||||||||||||| Sbjct: 1607 gcgccgcgctccaccgccgccaca 1584
>ref|XM_613822.2| PREDICTED: Bos taurus coagulation factor X (F10), mRNA Length = 1796 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cccgcgaggtcttcgaggac 403 |||||||||||||||||||| Sbjct: 479 cccgcgaggtcttcgaggac 498
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12, complete sequence Length = 172647 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cggcggcggcgtcgtcttct 98 |||||||||||||||||||| Sbjct: 98147 cggcggcggcgtcgtcttct 98128
>gb|AE009229.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 255 of 256 of the complete sequence Length = 12291 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gggcacaaggtggcgctcaa 183 |||||||||||||||||||| Sbjct: 4806 gggcacaaggtggcgctcaa 4825
>gb|AC073094.11| Homo sapiens BAC clone RP11-369D24 from 7, complete sequence Length = 189126 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 gcgccgcgctacaccgccgccaca 442 |||||||||| ||||||||||||| Sbjct: 76891 gcgccgcgctccaccgccgccaca 76868
>emb|AL354709.15| Human DNA sequence from clone RP11-145E5 on chromosome 9 Contains the 5' end of the CDKN2B gene for cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4), a ubiquitin A-52 residue ribosomal protein fusion product 1 (UBA52) (RPL40) pseudogene, the 3' end of a variant of the MTAP gene for methylthioadenosine phosphorylase (MSAP), a novel gene and a CpG island, complete sequence Length = 157533 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cagctctccacatccttcct 234 |||||||||||||||||||| Sbjct: 59195 cagctctccacatccttcct 59176
>emb|AL136162.18| Human DNA sequence from clone RP11-560J1 on chromosome 6 Contains the 5' end of the JMJ gene for jumonji protein, a novel gene and one CpG island, complete sequence Length = 129135 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cacacgggcgtggtggtgta 279 |||||||||||||||||||| Sbjct: 92473 cacacgggcgtggtggtgta 92492
>emb|AL133412.7| Human DNA sequence from clone RP11-78H18 on chromosome 9q22.1-22.33 Contains the 5' end of the TNFSF15 gene for tumor necrosis factor (ligand) superfamily, member 15 (TL1, VEG1), a PRP4 pre-mRNA processing factor 4 homolog B (PR4H, Prp4, PRP4H, PRP4K, KIAA0536) (PRPF4B) pseudogene and the TNFSF8 gene for tumor necrosis factor (ligand) superfamily, member 8 (CD153, CD30L, CD30LG), complete sequence Length = 158717 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ggaggaggggcacaaggtgg 176 |||||||||||||||||||| Sbjct: 22375 ggaggaggggcacaaggtgg 22394
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete sequence Length = 158204 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gccagctctccacatccttc 232 |||||||||||||||||||| Sbjct: 65169 gccagctctccacatccttc 65188
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 tcgacctgggcgtcacccac 379 |||||||||||||||||||| Sbjct: 18255 tcgacctgggcgtcacccac 18274
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tgcgggtcgtcgacctgggc 370 |||||||||||||||||||| Sbjct: 2239671 tgcgggtcgtcgacctgggc 2239690
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gcgtcgtcttcttctccaag 106 |||||||||||||||||||| Sbjct: 84152 gcgtcgtcttcttctccaag 84171
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 ccgtgcgggtcgtcgacctgggcg 371 |||| ||||||||||||||||||| Sbjct: 1964925 ccgtccgggtcgtcgacctgggcg 1964902
>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete sequence Length = 154696 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 cgcgccgcgctacaccgccgccac 441 ||||||||||| |||||||||||| Sbjct: 118306 cgcgccgcgctccaccgccgccac 118283
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gggcacaaggtggcgctcaa 183 |||||||||||||||||||| Sbjct: 2824640 gggcacaaggtggcgctcaa 2824659
>gb|BC104607.2| Bos taurus cDNA clone IMAGE:8121240, partial cds Length = 1529 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cccgcgaggtcttcgaggac 403 |||||||||||||||||||| Sbjct: 173 cccgcgaggtcttcgaggac 192
>ref|XM_941336.1| PREDICTED: Homo sapiens similar to Unc4.1 homeobox (LOC652032), mRNA Length = 1656 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 gcgccgcgctacaccgccgccaca 442 |||||||||| ||||||||||||| Sbjct: 968 gcgccgcgctccaccgccgccaca 945
>ref|XM_294209.6| PREDICTED: Homo sapiens similar to Unc4.1 homeobox (LOC340260), mRNA Length = 1656 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 gcgccgcgctacaccgccgccaca 442 |||||||||| ||||||||||||| Sbjct: 968 gcgccgcgctccaccgccgccaca 945
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 ccgtgcgggtcgtcgacctgggcg 371 ||||||||||||||||| |||||| Sbjct: 3807184 ccgtgcgggtcgtcgacgtgggcg 3807161
>gb|AF323606.1|AF323606 Rhodococcus erythropolis picric acid degradation gene cluster, partial sequence Length = 12500 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 480 acgaggtcgcgcagttcctcgtcggcgc 507 |||||||||||||||| |||| |||||| Sbjct: 8984 acgaggtcgcgcagttgctcggcggcgc 8957
>gb|AY027575.1| Rhodococcus opacus strain RB1 NADPH-dependent F420 reductase (fnr) gene, partial cds Length = 610 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 480 acgaggtcgcgcagttcctcgtcggcgc 507 |||||||||||||||| |||| |||||| Sbjct: 386 acgaggtcgcgcagttgctcggcggcgc 359
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ttccggcggcggcgtcgtct 95 |||||||||||||||||||| Sbjct: 18535256 ttccggcggcggcgtcgtct 18535237 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ttccggcggcggcgtcgtct 95 |||||||||||||||||||| Sbjct: 18501801 ttccggcggcggcgtcgtct 18501782
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cggcggcggcgtcgtcttct 98 |||||||||||||||||||| Sbjct: 6267792 cggcggcggcgtcgtcttct 6267773
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 acggcctcgcgcgccagctc 220 |||||||||||||||||||| Sbjct: 4273762 acggcctcgcgcgccagctc 4273743
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cggcgtcgtcttcttctcca 104 |||||||||||||||||||| Sbjct: 95588 cggcgtcgtcttcttctcca 95607
>dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1003B09 Length = 155263 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctttccggcggcggcgtcgt 93 |||||||||||||||||||| Sbjct: 124644 ctttccggcggcggcgtcgt 124625
>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1168H06 Length = 185600 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctttccggcggcggcgtcgt 93 |||||||||||||||||||| Sbjct: 100103 ctttccggcggcggcgtcgt 100084
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 gcagtacggccgccccgtgcgggt 357 ||||||||||| |||||||||||| Sbjct: 1035854 gcagtacggcctccccgtgcgggt 1035877
>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_B06 Length = 131956 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gctcaacgtctacgacctga 197 |||||||||||||||||||| Sbjct: 90140 gctcaacgtctacgacctga 90159
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cggcctcgcgcgccagctct 221 |||||||||||||||||||| Sbjct: 1089304 cggcctcgcgcgccagctct 1089285
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gctcaacgtctacgacctga 197 |||||||||||||||||||| Sbjct: 32605 gctcaacgtctacgacctga 32624
>dbj|AB090357.1| Rhodococcus sp. PN1 npdG, npdH, npdI, npdJ, npdK genes, complete and partial cds Length = 3092 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 480 acgaggtcgcgcagttcctcgtcggcgc 507 |||||||||||||||| |||| |||||| Sbjct: 463 acgaggtcgcgcagttgctcggcggcgc 436
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ttccggcggcggcgtcgtct 95 |||||||||||||||||||| Sbjct: 117279 ttccggcggcggcgtcgtct 117260 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ttccggcggcggcgtcgtct 95 |||||||||||||||||||| Sbjct: 83824 ttccggcggcggcgtcgtct 83805
>dbj|AK109150.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F09, full insert sequence Length = 949 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cggcggcggcgtcgtcttct 98 |||||||||||||||||||| Sbjct: 713 cggcggcggcgtcgtcttct 694
>dbj|AK072538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132B16, full insert sequence Length = 1106 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gctcaacgtctacgacctga 197 |||||||||||||||||||| Sbjct: 99 gctcaacgtctacgacctga 118
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gctcaacgtctacgacctga 197 |||||||||||||||||||| Sbjct: 195888 gctcaacgtctacgacctga 195907
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 gcagtacggccgccccgtgcgggt 357 ||||||||||| |||||||||||| Sbjct: 708831 gcagtacggcctccccgtgcgggt 708854
>emb|X00673.1|BTCFXI Bovine mRNA for blood coagulation factor X Length = 1537 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cccgcgaggtcttcgaggac 403 |||||||||||||||||||| Sbjct: 275 cccgcgaggtcttcgaggac 294 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,150,457 Number of Sequences: 3902068 Number of extensions: 4150457 Number of successful extensions: 111187 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107951 Number of HSP's gapped (non-prelim): 3226 length of query: 524 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 501 effective length of database: 17,143,297,704 effective search space: 8588792149704 effective search space used: 8588792149704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)