ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06f02 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 95.1 bits (235), Expect = 1e-19 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK- 320 ++YVGNL GELE F +G LR+VW+AR PPGFAF++F+D RDAEDA+R LDGK Sbjct: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71 Query: 321 ---NGWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 + RVELS + +CYECGE GH+A +C Sbjct: 72 ICGSRVRVELS------TGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 95.1 bits (235), Expect = 1e-19 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK- 320 ++YVGNL GELE F +G LR+VW+AR PPGFAF++F+D RDAEDA+R LDGK Sbjct: 41 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 100 Query: 321 ---NGWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 + RVELS + +CYECGE GH+A +C Sbjct: 101 ICGSRVRVELS------TGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 80.1 bits (196), Expect = 3e-15 Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 4/72 (5%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 A++YVG L + T+ ELE+ F FG +R VWVAR+PPGFAF+++DD RDAEDA+R LDG Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62 Query: 321 N----GWRVELS 344 RVELS Sbjct: 63 RICGVRARVELS 74
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 79.0 bits (193), Expect = 7e-15 Identities = 36/67 (53%), Positives = 48/67 (71%) Frame = +3 Query: 117 RRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAED 296 R R+ ++YVGNL + + E+E F +G LR+VWVAR PPGFAF++F+D+RDAED Sbjct: 3 RYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAED 62 Query: 297 ALRDLDG 317 A R LDG Sbjct: 63 ATRALDG 69
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 77.4 bits (189), Expect = 2e-14 Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 4/71 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 ++YVGNL ELE F +G LRSVWVAR PPGFAF++F+D RDA DA+R+LDG+ Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70 Query: 324 ----GWRVELS 344 RVELS Sbjct: 71 LCGCRVRVELS 81
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 77.4 bits (189), Expect = 2e-14 Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 4/71 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 ++YVGNL ELE F +G LRSVWVAR PPGFAF++F+D RDA DA+R+LDG+ Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70 Query: 324 ----GWRVELS 344 RVELS Sbjct: 71 LCGCRVRVELS 81
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 66.2 bits (160), Expect = 5e-11 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK- 320 R+YVGNL +V +LE EF +G L SVW+A PPGFAF++F+ + DAE A L+G Sbjct: 8 RVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSE 67 Query: 321 ---NGWRVELSR 347 + RVE+S+ Sbjct: 68 LLGSQLRVEISK 79
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 63.2 bits (152), Expect = 4e-10 Identities = 30/60 (50%), Positives = 43/60 (71%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 AR+Y+G L +RV+ ++E FR +G +R V + GF F++FDDKRDAEDA+ DL+GK Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGK 59
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 55.8 bits (133), Expect = 6e-08 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFG--VLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 +YVGNL + E+ED F +G V + V +PPG+AF++FDD RDAEDA+ DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 54.3 bits (129), Expect = 2e-07 Identities = 27/61 (44%), Positives = 39/61 (63%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 M R+Y+G L R + ++E FR +G L V + GF F+DF D+RDA+DA+ DL+G Sbjct: 1 MVRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN---GFGFVDFQDQRDADDAVHDLNG 57 Query: 318 K 320 K Sbjct: 58 K 58
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWV-ARKPPGFAFIDFDDKRDAEDALRDLDG 317 ++YVGNL V E+ED F +G ++ V + + + P FAF++F+D RDAEDA+R DG Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA--RKPPGFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + ++ED F +G +R + + R P FAF++F+D RDAEDA+ DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 318 --KNGWRVEL 341 +G+R+ + Sbjct: 76 YDYDGYRLRV 85
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA--RKPPGFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + ++ED F +G +R + + R P FAF++F+D RDAEDA+ DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 318 --KNGWRVEL 341 +G+R+ + Sbjct: 77 YDYDGYRLRV 86
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA--RKPPGFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + ++ED F +G +R + + R P FAF++F+D RDAEDA+ DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 318 --KNGWRVEL 341 +G+R+ + Sbjct: 76 YDYDGYRLRV 85
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA--RKPPGFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + ++ED F +G +R + + R P FAF++F+D RDAEDA+ DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 318 --KNGWRVEL 341 +G+R+ + Sbjct: 76 YDYDGYRLRV 85
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA--RKPPGFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + ++ED F +G +R + + R P FAF++F+D RDAEDA+ DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 318 --KNGWRVEL 341 +G+R+ + Sbjct: 76 YDYDGYRLRV 85
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 52.8 bits (125), Expect = 5e-07 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA--RKPPGFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + ++ED F +G +R + + R P FAF++F+D RDAEDA+ DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 318 --KNGWRVEL 341 +G+R+ + Sbjct: 76 YDYDGYRLRV 85
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 52.4 bits (124), Expect = 7e-07 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 4/70 (5%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA--RKPPGFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + ++ED F +G +R + + R P FAF++F+D RDAEDA+ DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75 Query: 318 --KNGWRVEL 341 +G+R+ + Sbjct: 76 YDYDGYRLRV 85
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/61 (40%), Positives = 37/61 (60%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 M RLY+G + ++E + +G + ++ + GFAF+DF+D RDAEDA DLDG Sbjct: 1 MPRLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDG 57 Query: 318 K 320 K Sbjct: 58 K 58
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 4/136 (2%) Frame = +3 Query: 108 APRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRD 287 A RR +++VGNL + A E+ + F+ +G + + R + F+ D D Sbjct: 75 AKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN---YGFVHLDCVGD 131 Query: 288 AEDALRDLDGK----NGWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESG 455 +DA+++L+G+ +V++S + +CY CG SG Sbjct: 132 VQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMG--------------DPEQCYRCGRSG 177 Query: 456 HFARECRLRIGAGGLG 503 H+++EC G+ G G Sbjct: 178 HWSKECPRLYGSAGGG 193 Score = 34.3 bits (77), Expect = 0.20 Identities = 16/58 (27%), Positives = 32/58 (55%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 +L++GNLD + A EL F +G + V + + F+ + ++ DA+++L+G Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVK---NYGFVHMETEQQGRDAIQNLNG 62
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/59 (37%), Positives = 39/59 (66%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 R+++G L+ ++E F+ +G +R + + R GF F++F+D RDA+DA+ +LDGK Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGK 60
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/59 (37%), Positives = 39/59 (66%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 R+++G L+ ++E F+ +G +R + + R GF F++F+D RDA+DA+ +LDGK Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGK 60
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/59 (37%), Positives = 39/59 (66%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 R+++G L+ ++E F+ +G +R + + R GF F++F+D RDA+DA+ +LDGK Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGK 60
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 5/63 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 311 L+V N+ + +L EF +G + V+V R+P GFA++ F+D RDAEDAL +L Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 312 DGK 320 D K Sbjct: 72 DRK 74
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 5/63 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 311 L+V N+ + +L EF +G + V+V R+P GFA++ F+D RDAEDAL +L Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 312 DGK 320 D K Sbjct: 72 DRK 74
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP--GFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL + V +LED F +G +R + + + FAF+ F+D RDAEDA+ G Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY---G 72 Query: 318 KNGW 329 +NG+ Sbjct: 73 RNGY 76
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 47.4 bits (111), Expect = 2e-05 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP--GFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL V +LED F +G +R + + + FAF+ F+D RDAEDA+ G Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY---G 71 Query: 318 KNGW 329 +NG+ Sbjct: 72 RNGY 75
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 47.4 bits (111), Expect = 2e-05 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP--GFAFIDFDDKRDAEDALRDLDG 317 R+YVGNL V +LED F +G +R + + + FAF+ F+D RDAEDA+ G Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY---G 71 Query: 318 KNGW 329 +NG+ Sbjct: 72 RNGY 75
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAF 263 G P P D+ M L V NL R + L F +G + V++ R + GFAF Sbjct: 3 GRPPP----DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 264 IDFDDKRDAEDALRDLDG 317 + F DKRDAEDA+ +DG Sbjct: 59 VRFHDKRDAEDAMDAMDG 76
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAF 263 G P P D+ M L V NL R + L F +G + V++ R + GFAF Sbjct: 3 GRPPP----DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 264 IDFDDKRDAEDALRDLDG 317 + F DKRDAEDA+ +DG Sbjct: 59 VRFHDKRDAEDAMDAMDG 76
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAF 263 G P P D+ M L V NL R + L F +G + V++ R + GFAF Sbjct: 3 GRPPP----DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 264 IDFDDKRDAEDALRDLDG 317 + F DKRDAEDA+ +DG Sbjct: 59 VRFHDKRDAEDAMDAMDG 76
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAF 263 G P P D+ M L V NL R + L F +G + V++ R + GFAF Sbjct: 3 GRPPP----DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 264 IDFDDKRDAEDALRDLDG 317 + F DKRDAEDA+ +DG Sbjct: 59 VRFHDKRDAEDAMDAMDG 76
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 46.6 bits (109), Expect = 4e-05 Identities = 23/60 (38%), Positives = 38/60 (63%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 +R+YVG L V +LE F+ +G R + + G+ F++F+D RDA+DA+ +L+GK Sbjct: 3 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKN---GYGFVEFEDYRDADDAVYELNGK 59
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAF 263 G P P D+ M L V NL R + L F +G + V++ R + GFAF Sbjct: 4 GRPPP----DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 59 Query: 264 IDFDDKRDAEDALRDLDG 317 + F DKRDAEDA+ +DG Sbjct: 60 VRFHDKRDAEDAMDAMDG 77
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 45.8 bits (107), Expect = 7e-05 Identities = 22/62 (35%), Positives = 39/62 (62%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 M R+Y+G L + ++E F+ +G + V + G+ F++FDD RDA+DA+ +L+G Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNG 57 Query: 318 KN 323 K+ Sbjct: 58 KD 59
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 45.8 bits (107), Expect = 7e-05 Identities = 22/62 (35%), Positives = 39/62 (62%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 M R+Y+G L + ++E F+ +G + V + G+ F++FDD RDA+DA+ +L+G Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNG 57 Query: 318 KN 323 K+ Sbjct: 58 KD 59
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD- 314 M ++ GN + G+LE FR +G + V + GFAF+ +D+RDAEDA+R LD Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDR 57 Query: 315 ---GKNGWRVEL 341 G+ G R+ + Sbjct: 58 FEFGRKGRRLRV 69
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/59 (38%), Positives = 36/59 (61%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 RLY+GNL + VT EL++ F +G + ++ FAF+ D + +AE A +DLDG+ Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEISEAFI-NAEKNFAFLKIDYRANAERAKKDLDGR 171
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW-----VARKPPGFA 260 +G P P ++ + A LYVG+LD VT L +FR G LR V R P G+ Sbjct: 3 SGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYG 62 Query: 261 FIDFDDKRDAEDALRDLD 314 +++F DAE AL ++ Sbjct: 63 YVNFRFPADAEWALNTMN 80 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 117 RRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKR 284 R RD T ++V N+ + +L++ F +G SV V R K GF F+ ++ Sbjct: 191 RTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHE 250 Query: 285 DAEDALRDLDGKN 323 A+ A+ DL GK+ Sbjct: 251 AAQKAVLDLHGKS 263 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 +Y+ NLD + +L++EF FG + V + GF + F +A A+ +++G Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Query: 318 K 320 + Sbjct: 364 R 364
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW-----VARKPPGFA 260 +G P P ++ + A LYVG+LD VT L +FR G LR V R P G+ Sbjct: 3 SGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYG 62 Query: 261 FIDFDDKRDAEDALRDLD 314 +++F DAE AL ++ Sbjct: 63 YVNFRFPADAEWALNTMN 80 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 117 RRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKR 284 R RD T ++V N+ + +L++ F +G SV V R K GF F+ ++ Sbjct: 191 RTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHE 250 Query: 285 DAEDALRDLDGKN 323 A+ A+ DL GK+ Sbjct: 251 AAQKAVLDLHGKS 263 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 +Y+ NLD + +L++EF FG + V + GF + F +A A+ +++G Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Query: 318 K 320 + Sbjct: 364 R 364
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW-----VARKPPGFA 260 +G P P ++ + A LYVG+LD VT L +FR G LR V R P G+ Sbjct: 3 SGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYG 62 Query: 261 FIDFDDKRDAEDALRDLD 314 +++F DAE AL ++ Sbjct: 63 YVNFRFPADAEWALNTMN 80 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 117 RRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKR 284 R RD T ++V N+ + +L++ F +G SV V R K GF F+ ++ Sbjct: 191 RTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHE 250 Query: 285 DAEDALRDLDGKN 323 A+ A+ DL GK+ Sbjct: 251 AAQKAVLDLHGKS 263 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 +Y+ NLD + +L++EF FG + V + GF + F +A A+ +++G Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Query: 318 K 320 + Sbjct: 364 R 364
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW-----VARKPPGFA 260 +G P P ++ + A LYVG+LD VT L +FR G LR V R P G+ Sbjct: 3 SGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYG 62 Query: 261 FIDFDDKRDAEDALRDLD 314 +++F DAE AL ++ Sbjct: 63 YVNFRFPADAEWALNTMN 80 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 117 RRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKR 284 R RD T ++V N+ + +L++ F +G SV V R K GF F+ ++ Sbjct: 191 RTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHE 250 Query: 285 DAEDALRDLDGKN 323 A+ A+ DL GK+ Sbjct: 251 AAQKAVLDLHGKS 263 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 +Y+ NLD + +L++EF FG + V + GF + F +A A+ +++G Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Query: 318 K 320 + Sbjct: 364 R 364
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW-----VARKPPGFA 260 +G P P ++ + A LYVG+LD VT L +FR G LR V R P G+ Sbjct: 3 SGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYG 62 Query: 261 FIDFDDKRDAEDALRDLD 314 +++F DAE AL ++ Sbjct: 63 YVNFRFPADAEWALNTMN 80 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 117 RRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKR 284 R RD T ++V N+ + +L++ F +G SV V R K GF F+ ++ Sbjct: 191 RTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHE 250 Query: 285 DAEDALRDLDGKN 323 A+ A+ DL GK+ Sbjct: 251 AAQKAVLDLHGKS 263 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 +Y+ NLD + +L++EF FG + V + GF + F +A A+ +++G Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Query: 318 K 320 + Sbjct: 364 R 364
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW-----VARKPPGFA 260 +G P P ++ + A LYVG+LD VT L +FR G LR V R P G+ Sbjct: 3 SGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYG 62 Query: 261 FIDFDDKRDAEDALRDLD 314 +++F DAE AL ++ Sbjct: 63 YVNFRFPADAEWALNTMN 80 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 117 RRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKR 284 R RD T ++V N+ + +L++ F +G SV V R K GF F+ ++ Sbjct: 191 RTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHE 250 Query: 285 DAEDALRDLDGKN 323 A+ A+ DL GK+ Sbjct: 251 AAQKAVLDLHGKS 263 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 +Y+ NLD + +L++EF FG + V + GF + F +A A+ +++G Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363 Query: 318 K 320 + Sbjct: 364 R 364
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/61 (36%), Positives = 37/61 (60%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 M R+Y+G L V +++ F +G L V + G+ F++F+D RDA+DA+ +L+G Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKN---GYGFVEFEDSRDADDAVYELNG 57 Query: 318 K 320 K Sbjct: 58 K 58
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 311 L++ N+ +L EF +G + V++ R+P GFA++ F+D RDAEDAL +L Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71 Query: 312 DGK 320 + K Sbjct: 72 NRK 74
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 43.5 bits (101), Expect = 3e-04 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 6/77 (7%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD- 314 M ++ GN + +LE FR +G + V + GFAF+ +D+RDAEDA+R LD Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDR 57 Query: 315 ---GKNG--WRVELSRN 350 G+ G RVE ++N Sbjct: 58 FEYGRTGRRLRVEWTKN 74
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 42.7 bits (99), Expect = 6e-04 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 T +L+VGN+ T EL +F +G + + + +AF+ + DA +A+R LD Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLD 132 Query: 315 GKN--GWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 G R+ + + CY CG+ GH+++EC Sbjct: 133 NTEFQGKRMHVQLSTSRLRTAPGMGDQSG------------CYRCGKEGHWSKEC 175 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 311 M +L++GNL T E+ F +G + + + + F+ +DK AEDA+R+L Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNL 55
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 42.7 bits (99), Expect = 6e-04 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 T +L+VGN+ T EL +F +G + + + +AF+ + DA +A+R LD Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLD 132 Query: 315 GKN--GWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 G R+ + + CY CG+ GH+++EC Sbjct: 133 NTEFQGKRMHVQLSTSRLRTAPGMGDQSG------------CYRCGKEGHWSKEC 175 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 311 M +L++GNL T E+ F +G + + + + F+ +DK AEDA+R+L Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNL 55
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 42.7 bits (99), Expect = 6e-04 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP--GFAFIDFDDKRDAEDALRDLDGK 320 LYV NL ++T+ E+ D F FG +R + V P G AF+ ++D DA++A L G Sbjct: 17 LYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 76 Query: 321 N 323 N Sbjct: 77 N 77
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 42.4 bits (98), Expect = 7e-04 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = +3 Query: 90 PTNGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPG 254 PTN + T A LYVG LD VT L + F G + S+ V R+ G Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLG 122 Query: 255 FAFIDFDDKRDAEDALRDLD 314 +A+++F + D E AL +L+ Sbjct: 123 YAYVNFHNMEDGEKALDELN 142 Score = 32.0 bits (71), Expect = 1.0 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA----RKPPGFAFIDFDDKRDAEDALRDLD 314 +++ NLD + L D F FG + S VA G+ F+ FD A A+ ++ Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229 Query: 315 G 317 G Sbjct: 230 G 230
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKRDAEDALR 305 ARL+V NL ELE F FG + + VA GFA++ + D A +A R Sbjct: 295 ARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYR 354 Query: 306 DLDGK 320 +LDGK Sbjct: 355 NLDGK 359
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 111 PRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFD 275 P + D F L+V ++ T +L EF V+G ++ + + + KP G+AFI+++ Sbjct: 95 PNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYE 152 Query: 276 DKRDAEDALRDLDGK 320 +RD A + DGK Sbjct: 153 HERDMHSAYKHADGK 167
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/59 (38%), Positives = 35/59 (59%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 M ++VGN + +LE F +G + V + G+AF+ F+D+RDAEDA+R LD Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L++G L+ LE F +G + V + + K GFAF+ F+ DA+DA RD Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 309 LDGKN 323 ++GK+ Sbjct: 69 MNGKS 73
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 111 PRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFD 275 P + D F L+V ++ T +L EF V+G ++ + + + KP G+AFI+++ Sbjct: 95 PNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYE 152 Query: 276 DKRDAEDALRDLDGK 320 +RD A + DGK Sbjct: 153 HERDMHSAYKHADGK 167
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 311 L+V ++ T +L EF V+G ++ + + + KP G+AFI+++ +RD A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 312 DGK 320 DGK Sbjct: 165 DGK 167
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 2/112 (1%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 +L+VGN+ T EL +F +G + + + +AF+ + DA +A+R LD Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTE 135 Query: 324 --GWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 G R+ + + CY CG+ GH+++EC Sbjct: 136 FQGKRMHVQLSTSRLRTAPGMGDQSG------------CYRCGKEGHWSKEC 175 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 311 M +L++GNL T E+ F +G + + + + F+ +DK AEDA+R+L Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNL 55
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV--------ARKPPGFAFIDFDDKRDAEDAL 302 L+V ++ T +L EF V+G ++ + + + KP G+AFI+++ +RD A Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAY 164 Query: 303 RDLDGK 320 + DGK Sbjct: 165 KHADGK 170
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 2/112 (1%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 +L+VGN+ T EL +F +G + + + +AF+ + DA +A+R LD Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTE 135 Query: 324 --GWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 G R+ + + CY CG+ GH+++EC Sbjct: 136 FQGKRMHVQLSTSRLRTAPGMGDQSG------------CYRCGKEGHWSKEC 175 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 311 M +L++GNL T E+ F +G + + + + F+ +DK AEDA+R+L Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNL 55
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 2/112 (1%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 +L+VGN+ T EL +F +G + + + +AF+ + DA +A+R LD Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTE 135 Query: 324 --GWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 G R+ + + CY CG+ GH+++EC Sbjct: 136 FQGKRMHVQLSTSRLRTAPGMGDQSG------------CYRCGKEGHWSKEC 175 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 311 M +L++GNL T E+ F +G + + + + F+ +DK AEDA+R+L Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNL 55
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 2/112 (1%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 +L+VGN+ T EL +F +G + + + +AF+ + DA +A+R LD Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTE 135 Query: 324 --GWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 G R+ + + CY CG+ GH+++EC Sbjct: 136 FQGKRMHVQLSTSRLRTAPGMGDQSG------------CYRCGKEGHWSKEC 175 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 311 M +L++GNL T E+ F +G + + + + F+ +DK AEDA+R+L Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNL 55
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 2/112 (1%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 +L+VGN+ T EL +F +G + + + +AF+ + DA +A+R LD Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTE 135 Query: 324 --GWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFAREC 473 G R+ + + CY CG+ GH+++EC Sbjct: 136 FQGKRMHVQLSTSRLRTAPGMGDQSG------------CYRCGKEGHWSKEC 175 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 311 M +L++GNL T E+ F +G + + + + F+ +DK AEDA+R+L Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNL 55
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = +3 Query: 423 DMKCYECGESGHFARECRLRIGAGGLGSG 509 D KCY+CGESGH +REC AG GSG Sbjct: 195 DRKCYKCGESGHMSRECP---SAGSTGSG 220 Score = 32.7 bits (73), Expect = 0.59 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 D CY+CGE+GH +R+C Sbjct: 252 DRTCYKCGEAGHISRDC 268 Score = 32.0 bits (71), Expect = 1.0 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 423 DMKCYECGESGHFARECRLRIGAGGLGSG 509 D CY+CG+ GH +REC G+ G G Sbjct: 221 DRACYKCGKPGHISRECPEAGGSYGGSRG 249 Score = 32.0 bits (71), Expect = 1.0 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Frame = +3 Query: 432 CYECGESGHFAREC--RLRIGAGG 497 C+ CGE GH +REC R GA G Sbjct: 45 CFRCGEEGHMSRECPNEARSGAAG 68 Score = 31.6 bits (70), Expect = 1.3 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 D CY+CG++GH +R+C Sbjct: 167 DRTCYKCGDAGHISRDC 183 Score = 31.6 bits (70), Expect = 1.3 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 D CY+CG++GH +R+C Sbjct: 139 DRTCYKCGDAGHISRDC 155 Score = 30.8 bits (68), Expect = 2.2 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +3 Query: 429 KCYECGESGHFARECRLRIGA--GGLG 503 +CY+CG+ GH +R+C G GG G Sbjct: 98 ECYKCGQEGHLSRDCPSSQGGSRGGYG 124 Score = 30.8 bits (68), Expect = 2.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 M C+ CGE+GH +R+C Sbjct: 70 MTCFRCGEAGHMSRDC 85 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 420 SDMKCYECGESGHFAREC 473 S C CG+ GH+AREC Sbjct: 14 SSTSCRNCGKEGHYAREC 31
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA----RKPPGFAFIDFDDKRDAEDALRDLD 314 LYVGNLD +T L+ F+V G + ++ + K +AF+++ DA AL+ L+ Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 135 Query: 315 GK 320 GK Sbjct: 136 GK 137
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/115 (22%), Positives = 44/115 (38%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 T +L+VGN+ + T EL +F +G + + + +AF+ + DA +A+ LD Sbjct: 76 TSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD---YAFVHMERVEDAMEAISGLD 132 Query: 315 GKNGWRVELSRNXXXXXXXXXXXXXXXXXXXXXXXSDMKCYECGESGHFARECRL 479 CY CG+ GH+++EC L Sbjct: 133 N----------TAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQEGHWSKECPL 177
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKP-PGFAFIDFDDKRDAEDALRDLDGKN 323 L++GNL+ +TAGEL F FG + + + ++ +AF + D A+R +DG++ Sbjct: 658 LFIGNLEKDITAGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEH 717
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Frame = +3 Query: 126 DLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKP----PGFAFIDFDDKRDAE 293 D F + LYV NLD ++ +L++ F FG + S V R P G F+ F +A Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEAT 372 Query: 294 DALRDLDGK 320 +A+ L GK Sbjct: 373 EAMSQLSGK 381
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDD 278 R D+ + L + NL + T +L F +G + V + +R+ GF F+ F + Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69 Query: 279 KRDAEDALRDLDGK 320 +RDAE AL DGK Sbjct: 70 RRDAEHALDRTDGK 83
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Frame = +3 Query: 87 PPTNGAPAPRRRRDLFTM--ARLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARK 245 PP N P + +YVGN+D TA ELE F G + V + + Sbjct: 147 PPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH 206 Query: 246 PPGFAFIDFDDKRDAEDAL 302 P GFA+I+F DK +L Sbjct: 207 PKGFAYIEFSDKESVRTSL 225
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP--GFAFIDFDDKRDAEDALRDLDGK 320 LY+ NL ++TA E+ D F +G +R + V P G A++ ++D DA++A L G Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 80 Query: 321 N 323 N Sbjct: 81 N 81
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP--GFAFIDFDDKRDAEDALRDLDGK 320 LY+ NL ++TA E+ D F +G +R + V P G A++ ++D DA++A L G Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 80 Query: 321 N 323 N Sbjct: 81 N 81
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA----RKPPGFAFIDFDDKRDAEDALRDLD 314 LY+ NLDA V+ L ++F FG + S+ +A R G+AF++FD+ DA A ++ Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262 Query: 315 G 317 G Sbjct: 263 G 263
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L++G L+ LE F +G + + + + K GFAF+ F+ DA+D RD Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 309 LDGKN 323 ++GK+ Sbjct: 69 MNGKS 73
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 39.7 bits (91), Expect = 0.005 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 RL+VG + + T ++ D F+ +G + + GF F++ +D RDA D + D GK Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQGK 60
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L+VG L+ LED F FG + V V + + GF FI F + A DA+R Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 309 LDGKN 323 ++G++ Sbjct: 67 MNGES 71
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK----PPGFAFIDFDDKRDAEDALRD 308 +++ + NL T +L + F FG L+SV V +K GFAF++F+ ++AE A+ Sbjct: 717 SKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQ 776 Query: 309 LDG 317 L+G Sbjct: 777 LEG 779
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAL 302 +YVGN+D TA ELE F G + V + + P GFA+I+F DK +L Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 229
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAL 302 +YVGN+D TA ELE F G + V + + P GFA+I+F DK +L Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 229
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 39.3 bits (90), Expect = 0.006 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAED 296 + MA LYVG+L + VT L ++F G + S+ + R+ G+A+++F DAE Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 36.6 bits (83), Expect = 0.041 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKP----PGFAFIDFDDKRDAEDALRDLD 314 +Y+ N V L++ F FG SV V R P GF F+ ++ DA A+ +++ Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252 Query: 315 GK 320 GK Sbjct: 253 GK 254 Score = 34.7 bits (78), Expect = 0.15 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRDLDG 317 LY+ NLD + +L EF FG + S V + GF F+ F +A A+ +++G Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 318 K 320 + Sbjct: 356 R 356 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+AF+ F+ + A+ A+ Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEK 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 39.3 bits (90), Expect = 0.006 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 RLYVGNL +T EL + F+ +G + ++ + F F+ D +AE A R LDG Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIF-SNLDKNFTFLKVDYHPNAEKAKRALDG 359
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 311 L+VGNLD T +L++ F G +R V + K GF F+DF D A+ Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME-- 287 Query: 312 DGKNGWRVE 338 G N WR+E Sbjct: 288 LGHNSWRLE 296
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 38.9 bits (89), Expect = 0.008 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L++G L+ LE F +G + + + + K GFAF+ + DA+DA RD Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 309 LDGKN 323 ++GK+ Sbjct: 69 MNGKS 73
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 38.9 bits (89), Expect = 0.008 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = +3 Query: 432 CYECGESGHFARECRLRIGAGGLG 503 C++CGESGHFAR+C G GG G Sbjct: 159 CFKCGESGHFARDCSQSGGGGGGG 182 Score = 35.4 bits (80), Expect = 0.090 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = +3 Query: 432 CYECGESGHFAREC 473 CY+CGE GHFAREC Sbjct: 196 CYKCGEDGHFAREC 209
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAED 296 + MA LYVG+L VT L ++F G + S+ + R+ G+A+++F DAE Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 34.7 bits (78), Expect = 0.15 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 LYV NLD + L EF FG + S V + GF F+ F +A A+ +++G Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 318 K 320 + Sbjct: 356 R 356 Score = 33.1 bits (74), Expect = 0.45 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKRDAEDALRDLD 314 +Y+ N + L++ F +G SV V K GF F+ F+ DA+ A+ D++ Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252 Query: 315 GKN 323 GK+ Sbjct: 253 GKD 255 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+ F+ F+ + AE A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDK 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAED 296 + MA LYVG+L VT L ++F G + S+ + R+ G+A+++F DAE Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 35.0 bits (79), Expect = 0.12 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 LYV NLD + L EF FG + S V + GF F+ F +A A+ +++G Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 318 K 320 + Sbjct: 356 R 356 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKRDAEDALRDLD 314 +Y+ N + L++ F +G SV V K GF F+ F+ DA+ A+ +++ Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 315 GKN 323 GK+ Sbjct: 253 GKD 255 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+ F+ F+ + AE A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDK 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAED 296 + MA LYVG+L VT L ++F G + S+ + R+ G+A+++F DAE Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 35.4 bits (80), Expect = 0.090 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 LYV NLD + L EF FG + S V + GF F+ F +A A+ +++G Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 318 K 320 + Sbjct: 356 R 356 Score = 33.9 bits (76), Expect = 0.26 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDLD 314 +Y+ N + L++ F FG SV V + K GF F+ F+ DA+ A+ +++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 315 GK--NGWRVELSR 347 GK NG ++ + R Sbjct: 253 GKELNGKQIYVGR 265 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+ F+ F+ + AE A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAED 296 + MA LYVG+L VT L ++F G + S+ + R+ G+A+++F DAE Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 35.4 bits (80), Expect = 0.090 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 LYV NLD + L EF FG + S V + GF F+ F +A A+ +++G Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 318 K 320 + Sbjct: 356 R 356 Score = 33.9 bits (76), Expect = 0.26 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDLD 314 +Y+ N + L++ F FG SV V + K GF F+ F+ DA+ A+ +++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 315 GK--NGWRVELSR 347 GK NG ++ + R Sbjct: 253 GKELNGKQIYVGR 265 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+ F+ F+ + AE A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAED 296 + MA LYVG+L VT L ++F G + S+ + R+ G+A+++F DAE Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 35.4 bits (80), Expect = 0.090 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 LYV NLD + L EF FG + S V + GF F+ F +A A+ +++G Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 318 K 320 + Sbjct: 356 R 356 Score = 35.4 bits (80), Expect = 0.090 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDLD 314 +Y+ N + L+D F FG SV V + K GF F+ F+ DA+ A+ +++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 315 GK--NGWRVELSR 347 GK NG ++ + R Sbjct: 253 GKELNGKQIYVGR 265 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+ F+ F+ + AE A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAED 296 + MA LYVG+L VT L ++F G + S+ + R+ G+A+++F DAE Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 35.4 bits (80), Expect = 0.090 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDALRDLDG 317 LYV NLD + L EF FG + S V + GF F+ F +A A+ +++G Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 318 K 320 + Sbjct: 356 R 356 Score = 35.4 bits (80), Expect = 0.090 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDLD 314 +Y+ N + L+D F FG SV V + K GF F+ F+ DA+ A+ +++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 315 GK--NGWRVELSR 347 GK NG ++ + R Sbjct: 253 GKELNGKQIYVGR 265 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+ F+ F+ + AE A+ Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +3 Query: 87 PPTNGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW--VARKPP--- 251 PP +RR ++++G L VT + + F +G ++ + V R P Sbjct: 143 PPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLS 202 Query: 252 -GFAFIDFDDKRDAEDALRDLDG 317 G+A+++F++ +AE AL+ +DG Sbjct: 203 KGYAYVEFENPDEAEKALKHMDG 225
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +3 Query: 87 PPTNGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW--VARKPP--- 251 PP +RR ++++G L VT + + F +G ++ + V R P Sbjct: 143 PPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLS 202 Query: 252 -GFAFIDFDDKRDAEDALRDLDG 317 G+A+++F++ +AE AL+ +DG Sbjct: 203 KGYAYVEFENPDEAEKALKHMDG 225
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +3 Query: 87 PPTNGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW--VARKPP--- 251 PP +RR ++++G L VT + + F +G ++ + V R P Sbjct: 143 PPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLS 202 Query: 252 -GFAFIDFDDKRDAEDALRDLDG 317 G+A+++F++ +AE AL+ +DG Sbjct: 203 KGYAYVEFENPDEAEKALKHMDG 225
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +3 Query: 87 PPTNGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW--VARKPP--- 251 PP +RR ++++G L VT + + F +G ++ + V R P Sbjct: 143 PPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLS 202 Query: 252 -GFAFIDFDDKRDAEDALRDLDG 317 G+A+++F++ +AE AL+ +DG Sbjct: 203 KGYAYVEFENPDEAEKALKHMDG 225
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +3 Query: 87 PPTNGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW--VARKPP--- 251 PP +RR ++++G L VT + + F +G ++ + V R P Sbjct: 143 PPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLS 202 Query: 252 -GFAFIDFDDKRDAEDALRDLDG 317 G+A+++F++ +AE AL+ +DG Sbjct: 203 KGYAYVEFENPDEAEKALKHMDG 225
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 RLYVGNL +T EL + F+ +G + ++ + F F+ D +AE A R LDG Sbjct: 286 RLYVGNLTNDITDEELREMFKPYGEIGEIF-SNLEKNFTFLKVDYHINAEKAKRPLDG 342
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 38.5 bits (88), Expect = 0.011 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRD 308 RL++ NL +L+ F FG L V + P GFA+IDF D DA A + Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383 Query: 309 LDGK 320 LD K Sbjct: 384 LDAK 387
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 38.1 bits (87), Expect = 0.014 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAF 263 G+P R D R+YVGNL V LE F G + S V + GF F Sbjct: 135 GSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGF 194 Query: 264 IDFDDKRDAEDALRDLDGK 320 + + + DA+ LDG+ Sbjct: 195 VTMSSESEVNDAIAALDGQ 213
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 38.1 bits (87), Expect = 0.014 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAEDALRD 308 RLYVGNL +T+ +L + F G + +V V + GFAF+ +A++A+R Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 309 LDG 317 DG Sbjct: 175 FDG 177
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 38.1 bits (87), Expect = 0.014 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAED 296 + +A LYVG+L VT L ++F G + S+ V R + G+A+I+F DAE Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 34.7 bits (78), Expect = 0.15 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK---PPGFAFIDFDDKR 284 + R + + LYV NLD + L EF +G + S V + GF F+ F Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPE 344 Query: 285 DAEDALRDLDGK 320 +A A+ +++G+ Sbjct: 345 EATKAVTEMNGR 356 Score = 30.8 bits (68), Expect = 2.2 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 12/90 (13%) Frame = +3 Query: 114 RRRRDL------FTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAF 263 RR R+L +Y+ N + L + F FG SV V + GF F Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGF 235 Query: 264 IDFDDKRDAEDALRDLDGK--NGWRVELSR 347 +++ + +A+ A+ +++GK NG + + R Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + +++ NLD + L D F FG + S V G+ F+ F+ + A A++ Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQT 157 Query: 309 LDG 317 ++G Sbjct: 158 MNG 160
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 38.1 bits (87), Expect = 0.014 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 RLYVGNL +T EL + F+ +G + ++ + F F+ D +AE A R LDG Sbjct: 282 RLYVGNLTNDITDEELREMFKPYGEIGEIF-SNLEKNFTFLKVDYHINAEKAKRALDG 338
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 37.7 bits (86), Expect = 0.018 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGA 491 S++ CY CGESGH AREC + A Sbjct: 155 SEVNCYRCGESGHLARECTIEATA 178 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGAGGLGSG 509 S +C++CG SGH+AREC GG G G Sbjct: 2 SSNECFKCGRSGHWARECPT---GGGRGRG 28 Score = 33.1 bits (74), Expect = 0.45 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 432 CYECGESGHFARECRLR 482 CY CGESGH A++C L+ Sbjct: 54 CYRCGESGHLAKDCDLQ 70 Score = 30.4 bits (67), Expect = 2.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 + KCY CGE GH ++C Sbjct: 117 EQKCYSCGEFGHIQKDC 133 Score = 30.4 bits (67), Expect = 2.9 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 D CY CG GH A++C+ Sbjct: 72 DEACYNCGRGGHIAKDCK 89 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 +KCY CGE+GH A C Sbjct: 136 VKCYRCGETGHVAINC 151 Score = 29.6 bits (65), Expect = 5.0 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 432 CYECGESGHFAREC 473 CY CG+ GH AR+C Sbjct: 99 CYNCGKPGHLARDC 112
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 37.7 bits (86), Expect = 0.018 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Frame = +3 Query: 120 RRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRD 287 RR L T LYV + A EL EF FG L + R FAF++++D RD Sbjct: 3 RRSLRT---LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRD 59 Query: 288 AEDALRDLDGK 320 AEDA ++ G+ Sbjct: 60 AEDAYYEVHGR 70
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 37.7 bits (86), Expect = 0.018 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Frame = +3 Query: 87 PPTNGAPAPRRR-------------RDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRS 227 P T GAP + DL RL+V NL T +LE F +G L Sbjct: 371 PTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE 430 Query: 228 VW-----VARKPPGFAFIDFDDKRDAEDALRDLDGK 320 + + +KP GFAFI F A A ++DG+ Sbjct: 431 LHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQ 466 Score = 34.7 bits (78), Expect = 0.15 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPG------FAFIDFDDKRDAED 296 T +++ V N+ + + E+ + F FG L++V + +K G F F+DF K+DA+ Sbjct: 830 TTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889 Query: 297 ALRDL 311 A L Sbjct: 890 AFNAL 894
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 37.7 bits (86), Expect = 0.018 Identities = 23/59 (38%), Positives = 33/59 (55%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 L+V NL VT LE F FG L V +K +AFI FD++ A A+ +++GK+ Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERV---KKLKDYAFIHFDERDGAVKAMEEMNGKD 395
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 37.7 bits (86), Expect = 0.018 Identities = 23/59 (38%), Positives = 33/59 (55%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 L+V NL VT LE F FG L V +K +AFI FD++ A A+ +++GK+ Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERV---KKLKDYAFIHFDERDGAVKAMEEMNGKD 305
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 37.7 bits (86), Expect = 0.018 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRDL 311 L++ ++ + +L EF +G ++ + + KP G+AFI+++ +RD A + Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163 Query: 312 DGK 320 DGK Sbjct: 164 DGK 166
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 37.7 bits (86), Expect = 0.018 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAED 296 + +A LY+G+L VT L ++F G + S+ V R + G+A+I+F DAE Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67 Query: 297 AL 302 AL Sbjct: 68 AL 69 Score = 34.7 bits (78), Expect = 0.15 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK---PPGFAFIDFDDKR 284 + R + + LYV NLD + L EF +G + S V + GF F+ F Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPE 344 Query: 285 DAEDALRDLDGK 320 +A A+ +++G+ Sbjct: 345 EATKAVTEMNGR 356 Score = 32.0 bits (71), Expect = 1.0 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 12/90 (13%) Frame = +3 Query: 114 RRRRDL------FTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAF 263 RR R+L +Y+ N + L++ F FG SV V + + GF F Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGF 235 Query: 264 IDFDDKRDAEDALRDLDGK--NGWRVELSR 347 +++ + +A+ A+ +++GK NG V + R Sbjct: 236 VNYGNHEEAQKAVTEMNGKEVNGRMVYVGR 265
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 37.7 bits (86), Expect = 0.018 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGA 491 S++ CY CGESGH AREC + A Sbjct: 154 SEVNCYRCGESGHLARECTIEATA 177 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGAGGLGSG 509 S +C++CG SGH+AREC GG G G Sbjct: 2 SSNECFKCGRSGHWARECPT---GGGRGRG 28 Score = 33.1 bits (74), Expect = 0.45 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 432 CYECGESGHFARECRLR 482 CY CGESGH A++C L+ Sbjct: 54 CYRCGESGHLAKDCDLQ 70 Score = 30.4 bits (67), Expect = 2.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 + KCY CGE GH ++C Sbjct: 116 EQKCYSCGEFGHIQKDC 132 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 +KCY CGE+GH A C Sbjct: 135 VKCYRCGETGHVAINC 150 Score = 29.6 bits (65), Expect = 5.0 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 432 CYECGESGHFAREC 473 CY CG+ GH AR+C Sbjct: 98 CYNCGKPGHLARDC 111 Score = 29.3 bits (64), Expect = 6.5 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +3 Query: 432 CYECGESGHFARECR 476 CY CG GH A++C+ Sbjct: 74 CYNCGRGGHIAKDCK 88
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 37.7 bits (86), Expect = 0.018 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGA 491 S++ CY CGESGH AREC + A Sbjct: 154 SEVNCYRCGESGHLARECTIEATA 177 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGAGGLGSG 509 S +C++CG SGH+AREC GG G G Sbjct: 2 SSNECFKCGRSGHWARECPT---GGGRGRG 28 Score = 33.1 bits (74), Expect = 0.45 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 432 CYECGESGHFARECRLR 482 CY CGESGH A++C L+ Sbjct: 54 CYRCGESGHLAKDCDLQ 70 Score = 30.4 bits (67), Expect = 2.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 + KCY CGE GH ++C Sbjct: 116 EQKCYSCGEFGHIQKDC 132 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 +KCY CGE+GH A C Sbjct: 135 VKCYRCGETGHVAINC 150 Score = 29.6 bits (65), Expect = 5.0 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 432 CYECGESGHFAREC 473 CY CG+ GH AR+C Sbjct: 98 CYNCGKPGHLARDC 111 Score = 29.3 bits (64), Expect = 6.5 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +3 Query: 432 CYECGESGHFARECR 476 CY CG GH A++C+ Sbjct: 74 CYNCGRGGHIAKDCK 88
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 37.7 bits (86), Expect = 0.018 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGA 491 S++ CY CGESGH AREC + A Sbjct: 154 SEVNCYRCGESGHLARECTIEATA 177 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGAGGLGSG 509 S +C++CG SGH+AREC GG G G Sbjct: 2 SSNECFKCGRSGHWARECPT---GGGRGRG 28 Score = 33.1 bits (74), Expect = 0.45 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 432 CYECGESGHFARECRLR 482 CY CGESGH A++C L+ Sbjct: 54 CYRCGESGHLAKDCDLQ 70 Score = 30.4 bits (67), Expect = 2.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 + KCY CGE GH ++C Sbjct: 116 EQKCYSCGEFGHIQKDC 132 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 +KCY CGE+GH A C Sbjct: 135 VKCYRCGETGHVAINC 150 Score = 29.6 bits (65), Expect = 5.0 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 432 CYECGESGHFAREC 473 CY CG+ GH AR+C Sbjct: 98 CYNCGKPGHLARDC 111 Score = 29.3 bits (64), Expect = 6.5 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +3 Query: 432 CYECGESGHFARECR 476 CY CG GH A++C+ Sbjct: 74 CYNCGRGGHIAKDCK 88
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 37.7 bits (86), Expect = 0.018 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 9/79 (11%) Frame = +3 Query: 111 PRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK---------PPGFAF 263 P ++ D F R++VG L E+ F G +R V + + P G AF Sbjct: 37 PAQQADDF---RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAF 93 Query: 264 IDFDDKRDAEDALRDLDGK 320 + F+++ D + A+ L+GK Sbjct: 94 VTFNNQEDVDKAIETLNGK 112
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.7 bits (86), Expect = 0.018 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDD 278 T+ +L+VG + + +L D F+ +G + S + RK GFAF++FDD Sbjct: 106 TVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDD 158
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 37.7 bits (86), Expect = 0.018 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGA 491 S++ CY CGESGH AREC + A Sbjct: 149 SEVNCYRCGESGHLARECTIEATA 172 Score = 35.4 bits (80), Expect = 0.090 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGAG 494 S +C++CG +GH+AREC IG G Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRG 26 Score = 33.1 bits (74), Expect = 0.45 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 432 CYECGESGHFARECRLR 482 CY CGESGH A++C L+ Sbjct: 48 CYRCGESGHLAKDCDLQ 64 Score = 30.8 bits (68), Expect = 2.2 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 D CY CG GH A++C+ Sbjct: 66 DKACYNCGRGGHIAKDCK 83 Score = 30.4 bits (67), Expect = 2.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 423 DMKCYECGESGHFAREC 473 + KCY CGE GH ++C Sbjct: 111 EQKCYSCGEFGHIQKDC 127 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 +KCY CGE+GH A C Sbjct: 130 VKCYRCGETGHVAINC 145 Score = 29.6 bits (65), Expect = 5.0 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 432 CYECGESGHFAREC 473 CY CG+ GH AR+C Sbjct: 93 CYNCGKPGHLARDC 106
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 37.7 bits (86), Expect = 0.018 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +3 Query: 105 PAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKR 284 P R+ + RL+V V EL + F FG ++ V + GFAF++F++ Sbjct: 113 PMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN---GFAFVEFEEAE 169 Query: 285 DAEDALRDLDGKN 323 A A+ ++ GK+ Sbjct: 170 SAAKAIEEVHGKS 182
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 37.4 bits (85), Expect = 0.024 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKRDAEDALRDL 311 +L++G L+ L+ F G + V + + K GFAFI F++ DA++A +D+ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 312 DGKN 323 +GK+ Sbjct: 69 NGKS 72
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/59 (38%), Positives = 33/59 (55%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKN 323 L+V NL VT LE F FG L V +K +AFI FD++ A A+ +++GK+ Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDERDGAVKAMEEMNGKD 395
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 37.4 bits (85), Expect = 0.024 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR--KPPGFAFIDFDDKRDAEDALRDLDGK 320 LY+ NL ++T E+ + F FG +R + V + G AF+ ++D DA+ A L G Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGY 80 Query: 321 N 323 N Sbjct: 81 N 81
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 37.4 bits (85), Expect = 0.024 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 5/64 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALR 305 A +Y+GNL+ +T G++ F +GV V ++R + GFA++ ++D+R A+ Sbjct: 31 AYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVD 90 Query: 306 DLDG 317 +L+G Sbjct: 91 NLNG 94
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 37.4 bits (85), Expect = 0.024 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDD 278 +R RD A L V NL EL D FR FG ++ V++A+ + GFAF+ + D Sbjct: 195 KRERD--DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252 Query: 279 KRDAEDALRDLDGKNGW 329 + A A LDG GW Sbjct: 253 RDCAIKARDRLDG-YGW 268
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 37.0 bits (84), Expect = 0.031 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%) Frame = +3 Query: 120 RRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKR 284 R D +++VG + EL + F+ FGV+ V + ++P GF FI F+D++ Sbjct: 106 RSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165 Query: 285 DAEDAL----RDLDGKNGWRVELSR 347 + A+ D+ GK +VE+ R Sbjct: 166 SVDQAVNMHFHDIMGK---KVEVKR 187
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 36.6 bits (83), Expect = 0.041 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L++G L+ LE F +G + V V + + GF F+ F++ DA+DA+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 309 LDGKN 323 ++GK+ Sbjct: 66 MNGKS 70
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 36.6 bits (83), Expect = 0.041 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L+VG L LE F +G + V V + + GF F+ F++ DA+DA+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 309 LDGKN 323 ++GK+ Sbjct: 67 MNGKS 71
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.6 bits (83), Expect = 0.041 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L+VG L LE F +G + V V + + GF F+ F++ DA+DA+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 309 LDGKN 323 ++GK+ Sbjct: 67 MNGKS 71
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 36.6 bits (83), Expect = 0.041 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%) Frame = +3 Query: 120 RRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKR 284 R D +++VG + EL + F+ FGV+ V + ++P GF FI F+D++ Sbjct: 106 RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165 Query: 285 DAEDAL----RDLDGKNGWRVELSR 347 + A+ D+ GK +VE+ R Sbjct: 166 SVDQAVNMHFHDIMGK---KVEVKR 187
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 36.6 bits (83), Expect = 0.041 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Frame = +3 Query: 126 DLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW-----VARKPPGFAFIDFDDKRDA 290 DL RL+V NL + +LE F +G L + + +KP GFAF+ F A Sbjct: 395 DLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 454 Query: 291 EDALRDLDGK 320 A ++DG+ Sbjct: 455 VKAYAEVDGQ 464 Score = 35.4 bits (80), Expect = 0.090 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPG------FAFIDFDDKRDAED 296 T +++ V N+ + E+ + F FG L++V + +K G F F+DF K+DA+ Sbjct: 822 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 881 Query: 297 ALRDL 311 A L Sbjct: 882 AFNAL 886
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 36.6 bits (83), Expect = 0.041 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Frame = +3 Query: 105 PAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----GFAFIDF 272 P ++ + ARL + NL + + +L+ F FG + V + RKP GF F+ F Sbjct: 101 PKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQF 160 Query: 273 DDKRDAEDALRDLDGK 320 + +A AL+ ++ K Sbjct: 161 KNLLEAGKALKGMNMK 176
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 36.6 bits (83), Expect = 0.041 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Frame = +3 Query: 108 APRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK------PPGFAFID 269 A +++ A ++VGNLD V L D F FGV+ V + GFAFI+ Sbjct: 89 ASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFIN 148 Query: 270 FDDKRDAEDALRDLDGK 320 F ++ AL ++G+ Sbjct: 149 FASFEASDTALEAMNGQ 165 Score = 29.6 bits (65), Expect = 5.0 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFA 260 + P R +D A +YVG LD +V+ L + G + SV V GF Sbjct: 2 SAGPIVERNQD----ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFG 57 Query: 261 FIDFDDKRDAEDALRDLD 314 F++F + DA+ A++ L+ Sbjct: 58 FVEFMGEEDADYAIKILN 75
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 36.6 bits (83), Expect = 0.041 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAL 302 MA LYVG+L V L D+F G + S+ V R+ G+A+++F DAE AL Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60 Score = 32.0 bits (71), Expect = 1.0 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%) Frame = +3 Query: 105 PAPRRRRDLFTMARL----YVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPG----FA 260 P R ++L A+L YV N +L++ F +G + S V K G F Sbjct: 167 PRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFG 226 Query: 261 FIDFDDKRDAEDALRDLDGKN 323 F+ F+ AE A++ L+GK+ Sbjct: 227 FVAFETTEAAEAAVQALNGKD 247 Score = 30.4 bits (67), Expect = 2.9 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDK 281 ++R + LYV NLD + L F +G + S V + GF F+ F+ Sbjct: 278 QKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAA 337 Query: 282 RDAEDALRDLDGK 320 +A A+ +L+G+ Sbjct: 338 SEATCAVTELNGR 350
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 36.6 bits (83), Expect = 0.041 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGK 320 L+V NL VT LE F FG L V +K +AF+ F+D+ A A+ +++GK Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERV---KKLKDYAFVHFEDRGAAVKAMDEMNGK 397
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAL 302 +++GN+D T E+E+ F+ G + + +K FA+I+FDD E+AL Sbjct: 103 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 159
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 36.2 bits (82), Expect = 0.053 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L+VG L+ LED F FG + V V + + GF FI F + A A+R Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 309 LDGKN 323 ++G++ Sbjct: 67 MNGES 71
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 36.2 bits (82), Expect = 0.053 Identities = 22/57 (38%), Positives = 31/57 (54%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 RL+VGNL A +T E + F +G V++ K GF FI + + AE A +LD Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI-NKGKGFGFIKLESRALAEIAKAELD 345
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 36.2 bits (82), Expect = 0.053 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRDLD 314 RL+V N+ R +L+ F FGV+ V + R GF F+ + +DAE A ++L Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213 Query: 315 GK--NGWRVELS 344 G G ++E++ Sbjct: 214 GSMIEGRKIEVN 225
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 36.2 bits (82), Expect = 0.053 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFA 260 N A R ++ +YVGN+D VT EL+ F G + V + P GFA Sbjct: 40 NETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFA 99 Query: 261 FIDFDDKRDAEDAL 302 +I+F + +AL Sbjct: 100 YIEFSEPSLVPNAL 113
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 36.2 bits (82), Expect = 0.053 Identities = 22/57 (38%), Positives = 31/57 (54%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 RL+VGNL A +T E + F +G V++ K GF FI + + AE A +LD Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI-NKGKGFGFIKLESRALAEIAKAELD 353
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 36.2 bits (82), Expect = 0.053 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKRDAEDALR 305 +RL+V NL + +LE F FG + + VA GFA++ + + A A + Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYK 360 Query: 306 DLDGKN 323 +LDGK+ Sbjct: 361 ELDGKH 366 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----------GFAFIDFDDKRDAED 296 L+V NL+ T + F+ S + KP GF F+DF K A+ Sbjct: 599 LFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQA 658 Query: 297 ALRDLDG 317 AL +DG Sbjct: 659 ALAAMDG 665
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.2 bits (82), Expect = 0.053 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L+VG L LE F +G + V V + + GF F+ F++ DA+DA+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 309 LDGKN 323 ++GK+ Sbjct: 67 MNGKS 71
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.2 bits (82), Expect = 0.053 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L+VG L LE F +G + V V + + GF F+ F++ DA+DA+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 309 LDGKN 323 ++GK+ Sbjct: 67 MNGKS 71
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 36.2 bits (82), Expect = 0.053 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 +L+VG L LE F +G + V V + + GF F+ F++ DA+DA+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 309 LDGKN 323 ++GK+ Sbjct: 67 MNGKS 71
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 36.2 bits (82), Expect = 0.053 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 + CY CGESGHFAR+C Sbjct: 180 LSCYSCGESGHFARDC 195 Score = 35.4 bits (80), Expect = 0.090 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = +3 Query: 423 DMKCYECGESGHFARECRLRIGAGGLGSG 509 D C++CGE GH AREC G GG G Sbjct: 135 DNSCFKCGEPGHMARECSQ--GGGGYSGG 161
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 35.8 bits (81), Expect = 0.069 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%) Frame = +3 Query: 90 PTNGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPG 254 P G R + +++VG + EL++ F FGV+ V + ++P G Sbjct: 97 PREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRG 156 Query: 255 FAFIDFDDKRDAEDAL----RDLDGKNGWRVELSR 347 F FI F+D++ + A+ D+ GK +VE+ R Sbjct: 157 FGFITFEDEQSVDQAVNMHFHDIMGK---KVEVKR 188
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 35.8 bits (81), Expect = 0.069 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Frame = +3 Query: 108 APRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGV-LRSVWVARKP-----PGFAFID 269 A ++L A +++GNLD + L D F FGV L++ + R P G+AFI+ Sbjct: 89 ASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFIN 148 Query: 270 FDDKRDAEDALRDLDGK 320 F ++ A+ ++G+ Sbjct: 149 FASFDASDAAIEAMNGQ 165
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 35.8 bits (81), Expect = 0.069 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKRDAEDALRD 308 L+V NLD V +LE+EF +G + S V R K GF F+ F +A A+ + Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITE 380
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 35.4 bits (80), Expect = 0.090 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDAL 302 +++GN+D T E+E+ F+ G + + +K FA+I+FDD E+AL Sbjct: 63 VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 119
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 35.4 bits (80), Expect = 0.090 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKRDAEDALRDL 311 L+V L+ + +++ EF +G ++ V + KP G+AFI++ RD + A + Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199 Query: 312 DGK 320 DG+ Sbjct: 200 DGQ 202
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 35.4 bits (80), Expect = 0.090 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDL 311 +L++ L T ELED + G ++ + + A KP G A+++++++ A A+ + Sbjct: 802 KLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861 Query: 312 DG 317 DG Sbjct: 862 DG 863
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 35.4 bits (80), Expect = 0.090 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV--ARKPPGFAFIDF 272 G PRR +L++GNL V EL+D F+ FG + + + K P F F+ F Sbjct: 324 GDVEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQNFGNVVELRINSGGKLPNFGFVVF 383 Query: 273 DDKRDAEDAL 302 DD + L Sbjct: 384 DDSEPVQKVL 393
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 35.4 bits (80), Expect = 0.090 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDLD 314 +Y+ N + L+D F FG SV V + K GF F+ F+ DA+ A+ +++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 315 GK--NGWRVELSR 347 GK NG ++ + R Sbjct: 253 GKELNGKQIYVGR 265 Score = 34.3 bits (77), Expect = 0.20 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = +3 Query: 132 FTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV---ARKPPGFAFIDFDDKRDAEDAL 302 + + LYV NLD + L F FG + S V + GF F+ F +A A+ Sbjct: 291 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350 Query: 303 RDLDGK 320 +++G+ Sbjct: 351 TEMNGR 356 Score = 29.3 bits (64), Expect = 6.5 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = +3 Query: 138 MARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALRD 308 + ++V NLD + L D FG + S V G+ F+ F+ AE A++ Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKK 157 Query: 309 LDGK--NGWRV 335 ++G NG +V Sbjct: 158 MNGMLLNGRKV 168
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 35.4 bits (80), Expect = 0.090 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = +3 Query: 96 NGAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK-----PPGFA 260 +G R R D T V NL + EL D F G + +++AR P GFA Sbjct: 164 DGRQIDRNRSDENTCR---VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFA 220 Query: 261 FIDFDDKRDAEDALRDLD 314 F+ F+ + DA A+ +L+ Sbjct: 221 FVTFESRDDAARAIAELN 238
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 +RL+VGNL +T E+ F +G V++ K GF FI + + AE A +LD Sbjct: 79 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELD 135
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRDL 311 LYV NL +T ELE F +G + + R KP G AF+ F+ + +A++A+ L Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 232 Query: 312 D 314 + Sbjct: 233 N 233 Score = 30.0 bits (66), Expect = 3.8 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP-----GFAFIDFDDKRDAEDALRDL 311 L V L +T EL FR G + + + + G+AF+DF + DA++A++ L Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146 Query: 312 DG 317 +G Sbjct: 147 NG 148
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 +RL+VGNL +T E+ F +G V++ K GF FI + + AE A +LD Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELD 130
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 +RL+VGNL +T E+ F +G V++ K GF FI + + AE A +LD Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELD 130
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 12/77 (15%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----------GFAFIDFDDKRDAED 296 +++ NL+ + T+ +L D F+VF V KP GF F++F K A Sbjct: 642 IFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATA 701 Query: 297 ALRDLDGK--NGWRVEL 341 + +DG +G +++L Sbjct: 702 VISAMDGTVIDGHKIQL 718
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD 314 +RL+VGNL +T E+ F +G V++ K GF FI + + AE A +LD Sbjct: 76 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELD 132
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 35.0 bits (79), Expect = 0.12 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Frame = +3 Query: 90 PTNGAPAPRRRRDLFTMA---RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPP 251 PT+G P + + + + RL+V N+ R +L F FG + V + R Sbjct: 96 PTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 155 Query: 252 GFAFIDFDDKRDAEDALRDLDGK--NGWRVELS 344 GF F+ F++ DA+ A L G G ++E++ Sbjct: 156 GFGFVTFENSADADRAREKLHGTVVEGRKIEVN 188
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 34.7 bits (78), Expect = 0.15 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = +3 Query: 108 APRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDF 272 APR F R+YVGNL V G LE F G + V + GF F+ Sbjct: 236 APRVYEPAF---RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292 Query: 273 DDKRDAEDALRDLDGKN 323 D + +A+ LDG+N Sbjct: 293 SDVDELNEAISALDGQN 309
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 34.7 bits (78), Expect = 0.15 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Frame = +3 Query: 90 PTNGAPAPRRRRDLFTMA---RLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPP 251 PT+G P + + + RL+V N+ R +L F FG + V + R Sbjct: 97 PTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 156 Query: 252 GFAFIDFDDKRDAEDALRDLDGK--NGWRVELS 344 GF F+ F++ DA+ A L G G ++E++ Sbjct: 157 GFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 34.7 bits (78), Expect = 0.15 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----GFAFIDFDDKRDAEDALRD 308 A LY+ NLD V +L++ F +G + S V P GF F+ + + +A AL + Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391 Query: 309 LDGK 320 ++GK Sbjct: 392 MNGK 395 Score = 33.5 bits (75), Expect = 0.34 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Frame = +3 Query: 105 PAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPG----FAFIDF 272 P PR +YV NL + EL F FGV+ S V R G F F++F Sbjct: 224 PTPR-------FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276 Query: 273 DDKRDAEDALRDLDG 317 + A A+ ++G Sbjct: 277 ECTEAAASAVEKMNG 291 Score = 33.5 bits (75), Expect = 0.34 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKRDAEDALRDLD 314 +++ NLDA + L + F FG + S VA + G+ F+ F+ + A+ A+ L+ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197 Query: 315 G 317 G Sbjct: 198 G 198
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 34.3 bits (77), Expect = 0.20 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFG-VLRSVWVARKPPGF----AFIDFDDKRDAEDALR 305 A LY+ L +T ++ED F FG ++ S + + G AFI FD + +AE+A+ Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165 Query: 306 DLDG 317 +G Sbjct: 166 SFNG 169
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 34.3 bits (77), Expect = 0.20 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFG------VLRSVWVARKPPGFAFIDFDDKRDAEDALRD 308 LYV NL +T ELE F +G +LR R P G AF+ F+ + +A++A+ Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGR-PRGVAFVRFNKREEAQEAISA 248 Query: 309 LD 314 L+ Sbjct: 249 LN 250
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 34.3 bits (77), Expect = 0.20 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWV--ARKPPGFAFIDFDDKRDAEDAL 302 +L++GNL V EL+D F+ +G + + + K P F F+ FDD + L Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVL 395
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 34.3 bits (77), Expect = 0.20 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 5/58 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEF-RVFGVLRSVW----VARKPPGFAFIDFDDKRDAEDALR 305 +YVGN+D R+T +L + F ++ VLR + V + G+AFI+F ++ DA+ A++ Sbjct: 11 VYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIK 68
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 34.3 bits (77), Expect = 0.20 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKRDAEDALRDL 311 LYVGNL T ++ + F G ++ + + + GF F+++ + DAE+A+R + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 312 DG 317 +G Sbjct: 102 NG 103
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 34.3 bits (77), Expect = 0.20 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKRDAEDALRDL 311 LYVGNL T ++ + F G ++ + + + GF F+++ + DAE+A+R + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 312 DG 317 +G Sbjct: 102 NG 103
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 34.3 bits (77), Expect = 0.20 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVA-----RKPPGFAFIDFDDKRDAEDALRDL 311 LYVGNL T ++ + F G ++ + + + GF F+++ + DAE+A+R + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 312 DG 317 +G Sbjct: 102 NG 103
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 34.3 bits (77), Expect = 0.20 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK---PPGFAFIDFDDKR 284 + R + + LYV NLD + L EF +G + S V + GF F+ F Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPE 344 Query: 285 DAEDALRDLDGK 320 +A A+ +++G+ Sbjct: 345 EATKAVTEMNGR 356 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%) Frame = +3 Query: 114 RRRRDL------FTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAF 263 RR R+L +Y+ N + L + F FG SV V + + GF F Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235 Query: 264 IDFDDKRDAEDALRDLDGK--NGWRVELSR 347 +++ + +A+ A+ +++GK NG + + R Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 34.3 bits (77), Expect = 0.20 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVW--VARKPP----GFAFIDFD 275 +RR ++++G L VT + + F +G ++ + V R P G+A+++F+ Sbjct: 129 KRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFE 188 Query: 276 DKRDAEDALRDLDG 317 +AE AL+ +DG Sbjct: 189 APEEAEKALKHMDG 202
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 33.9 bits (76), Expect = 0.26 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDL 311 +L++ L T ELE+ + G ++ + + A KP G A+++++++ A A+ + Sbjct: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 861 Query: 312 DG 317 DG Sbjct: 862 DG 863
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 33.9 bits (76), Expect = 0.26 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRD 308 R+YVGNL V LE F G + V + + GF F+ +D ++ ++A++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 309 LDG 317 LDG Sbjct: 265 LDG 267
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 33.9 bits (76), Expect = 0.26 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDALRDL 311 +L++ L T ELE+ + G ++ + + A KP G A+++++++ A A+ + Sbjct: 820 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 879 Query: 312 DG 317 DG Sbjct: 880 DG 881
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.26 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 + KCY CG+ GH AR+CR Sbjct: 384 NQKCYNCGKPGHLARQCR 401
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.26 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 + KCY CG+ GH AR+CR Sbjct: 384 NQKCYNCGKPGHLARQCR 401
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.26 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 + KCY CG+ GH AR+CR Sbjct: 384 NQKCYNCGKPGHLARQCR 401
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.26 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 + KCY CG+ GH AR+CR Sbjct: 384 NQKCYNCGKPGHLARQCR 401
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 33.9 bits (76), Expect = 0.26 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARK-----PPGFAFIDFDDKRDAEDALRD 308 ++Y+ NL + ++ + + FG L S + + GF F +F + DAE A+ Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370 Query: 309 LDGKN 323 LDGK+ Sbjct: 371 LDGKD 375
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 33.9 bits (76), Expect = 0.26 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVA---RKPPGFAFIDFDDKRDAEDALR 305 T RL+V N+ R +L F FG + V + R GF F+ F++ DA+ A Sbjct: 119 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 178 Query: 306 DLDGK--NGWRVELS 344 L G G ++E++ Sbjct: 179 KLHGTVVEGRKIEVN 193
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 33.9 bits (76), Expect = 0.26 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAFIDFDDKRDAEDALRDL 311 ++VGN+ VT ++ED F+ G ++ + + P G+ +I+F+ E AL+ Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLN 125 Query: 312 DGK-NGWRVELSR 347 G+ G ++ +SR Sbjct: 126 GGELKGKKIAVSR 138
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 33.9 bits (76), Expect = 0.26 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFG--VLRSVWVAR---KPPGFAFIDFDDKRDAEDALRD 308 +L++G L L D F FG V V V R + GF F++F+D+ A A+ + Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 309 LDGK--NGWRVELS 344 +DGK NG + ++ Sbjct: 96 MDGKELNGRHIRVN 109
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFG-VLRSVWVARKPPGFA----FIDFDDKRDAEDALR 305 A LYV L +T ELE F +G ++ S + + G + FI FD + +AE+A++ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 306 DLDGK 320 L+G+ Sbjct: 185 GLNGQ 189
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAEDALR 305 A LYV L +T ELE F +G + + V G FI FD + +AE+A++ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184 Query: 306 DLDGK 320 L+G+ Sbjct: 185 GLNGQ 189
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAEDALR 305 A LYV L +T ELE F +G + + V G FI FD + +AE+A++ Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196 Query: 306 DLDGK 320 L+G+ Sbjct: 197 GLNGQ 201
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAEDALR 305 A LYV L +T ELE F +G + + V G FI FD + +AE+A++ Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191 Query: 306 DLDGK 320 L+G+ Sbjct: 192 GLNGQ 196
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFG-VLRSVWVARKPPGFA----FIDFDDKRDAEDALR 305 A LYV L +T ELE F +G ++ S + + G + FI FD + +AE+A++ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 306 DLDGK 320 L+G+ Sbjct: 185 GLNGQ 189
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFG-VLRSVWVARKPPGFA----FIDFDDKRDAEDALR 305 A LYV L +T ELE F +G ++ S + + G + FI FD + +AE+A++ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 306 DLDGK 320 L+G+ Sbjct: 185 GLNGQ 189
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 33.5 bits (75), Expect = 0.34 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFG-VLRSVWVARKPPGFA----FIDFDDKRDAEDALR 305 A LYV L +T ELE F +G ++ S + + G + FI FD + +AE+A++ Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Query: 306 DLDGK 320 L+G+ Sbjct: 185 GLNGQ 189
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 33.5 bits (75), Expect = 0.34 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----GFAFIDFDDKRDAEDALRD 308 ARL + NL + + +L+ F +G + V + +KP GFAF+ F + +A AL+ Sbjct: 113 ARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKG 172 Query: 309 LDGK 320 + K Sbjct: 173 ANMK 176
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 33.5 bits (75), Expect = 0.34 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +3 Query: 420 SDMKCYECGESGHFARECR 476 S +KCY CG++GH +R+C+ Sbjct: 114 SGLKCYTCGQAGHMSRDCQ 132 Score = 30.4 bits (67), Expect = 2.9 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRIGAGGL 500 S + CY+CG H A++C G GL Sbjct: 90 SKVSCYKCGGPNHMAKDCMKEDGISGL 116 Score = 29.3 bits (64), Expect = 6.5 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 429 KCYECGESGHFARECRLR 482 +CY CGE+GH EC ++ Sbjct: 48 QCYNCGETGHVRSECTVQ 65 Score = 28.9 bits (63), Expect = 8.5 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 420 SDMKCYECGESGHFAREC 473 +D CY C E+GH +++C Sbjct: 133 NDRLCYNCNETGHISKDC 150
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 33.1 bits (74), Expect = 0.45 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR----KPPGFAFIDFDDKRDAEDALRDLD 314 +++ NLDA + L + F FG + S VA + G+ F+ F+ + A+ A+ L+ Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193 Query: 315 G 317 G Sbjct: 194 G 194 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----GFAFIDFDDKRDAEDALRD 308 + LY+ NLD V +L++ F +G + S V GF F+ + + +A A+++ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387 Query: 309 LDGK 320 ++GK Sbjct: 388 MNGK 391
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 33.1 bits (74), Expect = 0.45 Identities = 22/68 (32%), Positives = 32/68 (47%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAE 293 ++ RD T L NL +VT EL++ F +R V K G A+I+F + DAE Sbjct: 387 KKERDART---LLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAE 443 Query: 294 DALRDLDG 317 + G Sbjct: 444 KTFEEKQG 451
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 33.1 bits (74), Expect = 0.45 Identities = 22/68 (32%), Positives = 32/68 (47%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAE 293 ++ RD T L NL +VT EL++ F +R V K G A+I+F + DAE Sbjct: 388 KKERDART---LLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAE 444 Query: 294 DALRDLDG 317 + G Sbjct: 445 KTFEEKQG 452
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 33.1 bits (74), Expect = 0.45 Identities = 22/68 (32%), Positives = 32/68 (47%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAE 293 ++ RD T L NL +VT EL++ F +R V K G A+I+F + DAE Sbjct: 386 KKERDART---LLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAE 442 Query: 294 DALRDLDG 317 + G Sbjct: 443 KTFEEKQG 450
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 33.1 bits (74), Expect = 0.45 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKP-----PGFAFIDFDDKRDAEDALRDL 311 L+V + +R+ EL+ F FG + V + R+P GF F+ F +A A+ +L Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 312 DGK 320 + + Sbjct: 163 NSQ 165
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 32.7 bits (73), Expect = 0.59 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 R +VG L ELE F FG + + + GF F+ F D++ +DA+ + Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 309 LDGK 320 ++GK Sbjct: 67 MNGK 70
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 446 Score = 32.7 bits (73), Expect = 0.59 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 429 KCYECGESGHFARECR 476 KCY CG+ GH AR+CR Sbjct: 385 KCYYCGKPGHLARQCR 400
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 32.7 bits (73), Expect = 0.59 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +3 Query: 429 KCYECGESGHFARECRLRIG 488 KCY CG+ GH AR CR + G Sbjct: 422 KCYHCGKPGHQARNCRSKNG 441
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 32.7 bits (73), Expect = 0.59 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +3 Query: 429 KCYECGESGHFARECRLRIG 488 KCY CG+ GH AR CR + G Sbjct: 422 KCYHCGKPGHQARNCRSKNG 441
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 32.7 bits (73), Expect = 0.59 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPG----FAFIDFDDKRDAEDALRDLD 314 L++GNLD VT +L F FGV+ V + R G + F+ F++ + A + Sbjct: 376 LFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMS 435 Query: 315 GK 320 GK Sbjct: 436 GK 437
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 32.7 bits (73), Expect = 0.59 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFG------VLRSVWVARKPPGFAFIDFD 275 R D A LYV L +T ELE F FG +L++ + G FI FD Sbjct: 239 RPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFD 298 Query: 276 DKRDAEDALRDLDG 317 + +A A+ L+G Sbjct: 299 KREEATRAIIALNG 312
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 32.7 bits (73), Expect = 0.59 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFG-VLRSVWVARKPPGF----AFIDFDDKRDAEDALR 305 A LY+ L +T ++ED F FG ++ S + + G AFI FD + +AE+A+ Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165 Query: 306 DLDG 317 G Sbjct: 166 SFIG 169
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 32.7 bits (73), Expect = 0.59 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Frame = +3 Query: 114 RRRRDLFTMARLYVGNLDARVTAGELEDEFRVFG------VLRSVWVARKPPGFAFIDFD 275 R D A LYV L +T ELE F FG +L++ + G FI FD Sbjct: 275 RPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFD 334 Query: 276 DKRDAEDALRDLDG 317 + +A A+ L+G Sbjct: 335 KREEATRAIIALNG 348
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 32.7 bits (73), Expect = 0.59 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = +3 Query: 429 KCYECGESGHFAREC 473 +CY CGE+GH AREC Sbjct: 18 RCYNCGENGHQAREC 32 Score = 32.0 bits (71), Expect = 1.0 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 420 SDMKCYECGESGHFARECRLRI 485 S+M CY CG GH AR+C + + Sbjct: 114 SNMNCYACGSYGHQARDCTMGV 135 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 Query: 429 KCYECGESGHFARECR 476 +CY+CG GH AR+CR Sbjct: 84 ECYKCGRVGHIARDCR 99
>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 282 Score = 32.7 bits (73), Expect = 0.59 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDE----FRVFGVLRSVWVAR--KPPGFAFIDFDDKRDAEDALRD 308 +Y+ NL+ ++ EL+ F FG + + V+R K G AF+ F + A +ALR Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATNALRS 71 Query: 309 LDG 317 + G Sbjct: 72 MQG 74
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 32.3 bits (72), Expect = 0.77 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSV-----WVARKPPGFAFIDFDDKRDAEDALRDL 311 +YVG L VT L + F FG + + + +++ GFAFI+++ DA A+ ++ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 312 D 314 + Sbjct: 68 N 68
>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 281 Score = 32.3 bits (72), Expect = 0.77 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDE----FRVFGVLRSVWVAR--KPPGFAFIDFDDKRDAEDALRD 308 +Y+ NL+ ++ EL+ F FG + + V+R K G AF+ F + A +ALR Sbjct: 11 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 Query: 309 LDG 317 + G Sbjct: 71 MQG 73
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 32.3 bits (72), Expect = 0.77 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 ++KC+ CG+ GH AR CR Sbjct: 388 NVKCFNCGKEGHIARNCR 405
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 32.3 bits (72), Expect = 0.77 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 426 MKCYECGESGHFARECRLRIGAGGLG 503 M+C +CG+ GH A++CR ++ G G Sbjct: 423 MRCLKCGKPGHLAKDCRGQVNFLGYG 448 Score = 29.6 bits (65), Expect = 5.0 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +3 Query: 426 MKCYECGESGHFAREC 473 +KCY CG+ GH R+C Sbjct: 402 VKCYNCGKFGHMQRQC 417
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 32.3 bits (72), Expect = 0.77 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPG----FAFIDFDDKRDAEDALRDLD 314 L++GNLD V+ EL F +G++ V + R G +AF+ F + A A + Sbjct: 12 LFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMS 71 Query: 315 GK 320 G+ Sbjct: 72 GR 73
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 32.3 bits (72), Expect = 0.77 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPG----FAFIDFDDKRDAEDALRDLD 314 L++GNLD V+ EL F +G++ V + R G +AF+ F + A A + Sbjct: 12 LFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMS 71 Query: 315 GK 320 G+ Sbjct: 72 GR 73
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 32.3 bits (72), Expect = 0.77 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 ++KC+ CG+ GH AR CR Sbjct: 388 NVKCFNCGKEGHIARNCR 405
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 32.3 bits (72), Expect = 0.77 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 L+VGNL VT L F+ G + + +A K GFAFIDF ++ + + L+D Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKD 299
>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 286 Score = 32.3 bits (72), Expect = 0.77 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDE----FRVFGVLRSVWVAR--KPPGFAFIDFDDKRDAEDALRD 308 +Y+ NL+ ++ EL+ F FG + + V+R K G AF+ F + A +ALR Sbjct: 17 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRS 76 Query: 309 LDG 317 + G Sbjct: 77 MQG 79
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 32.3 bits (72), Expect = 0.77 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = +3 Query: 105 PAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKR 284 P R + + L NL +T EL++ F +R V K G A+I+F + Sbjct: 382 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEA 441 Query: 285 DAEDALRDLDG 317 DAE L + G Sbjct: 442 DAEKNLEEKQG 452
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 32.3 bits (72), Expect = 0.77 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDAL 302 T +L V NLD V+ ++++ F FG L+ V + + G A + F+ K DA A+ Sbjct: 102 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAM 161 Query: 303 RDLDG 317 + +G Sbjct: 162 KQYNG 166
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 32.3 bits (72), Expect = 0.77 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFG-VLRSVWVAR----KPPGFAFIDFDDKRDAEDALR 305 A L+VGNLD V L D F G ++++ VAR + G+ F+ +D A+ A+ Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158 Query: 306 DLDGK 320 ++ + Sbjct: 159 AMNNQ 163
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 32.3 bits (72), Expect = 0.77 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV-----ARKPPGFAF 263 G+ R R R+YVGN+ + LE F G + S V + + GF F Sbjct: 177 GSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGF 236 Query: 264 IDFDDKRDAEDALRDLDGK 320 + + + +A+ +LDG+ Sbjct: 237 VTMSSEAEMSEAIANLDGQ 255
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC| 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 1886 Score = 32.3 bits (72), Expect = 0.77 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 Query: 429 KCYECGESGHFARECR 476 KCY CG+ GH+A +CR Sbjct: 880 KCYICGQEGHYANQCR 895
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 32.3 bits (72), Expect = 0.77 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDAL 302 T +L V NLD V+ ++++ F FG L+ V + + G A + F+ K DA A+ Sbjct: 103 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAM 162 Query: 303 RDLDG 317 + +G Sbjct: 163 KQYNG 167
>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP| core protein C-like 1) Length = 293 Score = 32.3 bits (72), Expect = 0.77 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +3 Query: 141 ARLYVGNLDARVTA-GELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 317 +R+++GNL+ V ++E F +G + V + GFAF+ +D +++A A+ DG Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK---GFAFVQYDKEKNARAAVAGEDG 72 Query: 318 K 320 + Sbjct: 73 R 73
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 32.0 bits (71), Expect = 1.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR CR Sbjct: 395 IKCFNCGKEGHLARNCR 411
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 32.0 bits (71), Expect = 1.0 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP-----GFAFIDF 272 +L+VG L T EL D F +G + S+ V P GFAFI F Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF 104
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 32.0 bits (71), Expect = 1.0 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGVLRSVWVAR-----KPPGFAFIDFDDKRDAEDALRD 308 R+YVGN+ + LE F G + S V + GF F+ + + DA+ + Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 309 LDGKN 323 LDG++ Sbjct: 291 LDGQS 295
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 32.0 bits (71), Expect = 1.0 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +3 Query: 135 TMARLYVGNLDARVTAGELEDEFRVFGVLRSVWV----ARKPPGFAFIDFDDKRDAEDAL 302 T A+L V NLD V+ ++++ F FG L+ V + + G A + F+ + DA A+ Sbjct: 73 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAM 132 Query: 303 RDLDG 317 + G Sbjct: 133 KQYKG 137
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 32.0 bits (71), Expect = 1.0 Identities = 21/64 (32%), Positives = 28/64 (43%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKNG 326 L V NL T L + F +R + GFAFI+F DA+DA +D N Sbjct: 416 LVVNNLSYSATEDSLREVFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDA---MDSCNN 472 Query: 327 WRVE 338 +E Sbjct: 473 TEIE 476
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 32.0 bits (71), Expect = 1.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR CR Sbjct: 389 IKCFNCGKEGHLARNCR 405
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 32.0 bits (71), Expect = 1.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR CR Sbjct: 389 VKCFNCGKEGHIARNCR 405
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 32.0 bits (71), Expect = 1.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----------GFAFIDFDDKRDAED 296 ++V NL+ + T+ L D F+ V KP GF F++F K AE Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666 Query: 297 ALRDLDG 317 A + +DG Sbjct: 667 AQKAMDG 673
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 653 Score = 32.0 bits (71), Expect = 1.0 Identities = 9/15 (60%), Positives = 14/15 (93%) Frame = +3 Query: 432 CYECGESGHFARECR 476 C++CG+ GHFA++CR Sbjct: 545 CFKCGKKGHFAKDCR 559
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 32.0 bits (71), Expect = 1.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR CR Sbjct: 389 VKCFNCGKEGHIARNCR 405
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 32.0 bits (71), Expect = 1.0 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 426 MKCYECGESGHFARECRLRIGAGGLG 503 +KC +CG+ GH A++CR ++ G G Sbjct: 419 IKCLKCGKPGHLAKDCRGQVNFLGYG 444 Score = 29.3 bits (64), Expect = 6.5 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 429 KCYECGESGHFAREC 473 KCY CG+ GH R+C Sbjct: 399 KCYNCGKFGHMQRQC 413
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 32.0 bits (71), Expect = 1.0 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = +3 Query: 105 PAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKR 284 P R + + L NL +T EL++ F +R V K G A+I+F + Sbjct: 381 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEA 440 Query: 285 DAEDALRDLDG 317 DAE L + G Sbjct: 441 DAEKNLEEKQG 451
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 32.0 bits (71), Expect = 1.0 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +3 Query: 141 ARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDAL 302 +RL++GNL + + E D FR+F + F FI FD+ + DA+ Sbjct: 330 SRLFIGNLPLKNVSKE--DLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAI 381
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.0 bits (71), Expect = 1.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR CR Sbjct: 389 VKCFNCGKEGHIARNCR 405
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.0 bits (71), Expect = 1.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR CR Sbjct: 389 IKCFNCGKEGHLARNCR 405
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 32.0 bits (71), Expect = 1.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR CR Sbjct: 395 IKCFNCGKEGHLARNCR 411
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 32.0 bits (71), Expect = 1.0 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGV-----LRSVWVARKPPGFAFIDFDDKRDAEDAL 302 +L+VGNL + EL++ F FG + + V K P F F+ FDD + L Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRIL 389
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 32.0 bits (71), Expect = 1.0 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = +3 Query: 144 RLYVGNLDARVTAGELEDEFRVFGV-----LRSVWVARKPPGFAFIDFDDKRDAEDAL 302 +L+VGNL + EL++ F FG + + V K P F F+ FDD + L Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRIL 389
>SCX7_CENNO (Q9TWL1) Toxin 7 (Toxin II-13.3) (Fragment)| Length = 55 Score = 31.6 bits (70), Expect = 1.3 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 429 KCYECGESGHFARECRLRIGAGGLG 503 +CY+ G++ + REC+LR+G G G Sbjct: 15 ECYKLGDNDYCLRECKLRVGKGAGG 39
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 31.6 bits (70), Expect = 1.3 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLD---G 317 +++GNL + E+E+ F FG + + + K AF+ F + RDA +R L Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK-KNIAFVHFLNIRDAIKVVRTLSCDPD 359 Query: 318 KNGWRV 335 + WR+ Sbjct: 360 YHSWRI 365
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 31.6 bits (70), Expect = 1.3 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 12/77 (15%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----------GFAFIDFDDKRDAED 296 +++ NL+ T L D F+VF V KP GF F++F K A Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANA 724 Query: 297 ALRDLDGK--NGWRVEL 341 + +DG +G +++L Sbjct: 725 VIAAMDGTVIDGHKIQL 741
>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR+CR Sbjct: 392 IKCWNCGKEGHSARQCR 408
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 899 Score = 31.6 bits (70), Expect = 1.3 Identities = 9/18 (50%), Positives = 15/18 (83%) Frame = +3 Query: 423 DMKCYECGESGHFARECR 476 ++ CY CG SGH+A++C+ Sbjct: 851 NVSCYNCGVSGHYAQDCK 868
>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR+CR Sbjct: 387 IKCWNCGKEGHSARQCR 403
>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR+CR Sbjct: 388 IKCWNCGKEGHSARQCR 404
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 519 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR+CR Sbjct: 387 IKCWNCGKEGHSARQCR 403
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 31.6 bits (70), Expect = 1.3 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 12/77 (15%) Frame = +3 Query: 147 LYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPP----------GFAFIDFDDKRDAED 296 ++V NL+ T+ +L ++F+ F V KP GF FI+F K A Sbjct: 614 IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGA 673 Query: 297 ALRDLDGK--NGWRVEL 341 + +DG +G +++L Sbjct: 674 VIAAMDGAVIDGHKIQL 690
>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein| 16) Length = 1271 Score = 31.6 bits (70), Expect = 1.3 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = +3 Query: 99 GAPAPRRRRDLFTMARLYVGNLDARVTAGELEDEFRVFGVLRSVWVARKPPGFAFIDFDD 278 G P R + L+VG +D + T +L + F FG + S+ + P G A++ Sbjct: 463 GLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMI-PPRGCAYVCMVH 521 Query: 279 KRDAEDALRDL 311 ++DA AL+ L Sbjct: 522 RQDAFRALQKL 532
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR+CR Sbjct: 388 IKCWNCGKEGHSARQCR 404
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 31.6 bits (70), Expect = 1.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 426 MKCYECGESGHFARECR 476 +KC+ CG+ GH AR+CR Sbjct: 388 IKCWNCGKDGHSARQCR 404 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,784,275 Number of Sequences: 219361 Number of extensions: 1023906 Number of successful extensions: 3600 Number of sequences better than 10.0: 381 Number of HSP's better than 10.0 without gapping: 3137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3530 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
