ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit... 177 1e-44
2PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit... 112 6e-25
3PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit... 112 6e-25
4RPN10_SCHPO (O94444) 26S proteasome regulatory subunit rpn10 106 3e-23
5PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit... 103 2e-22
6RPN10_YEAST (P38886) 26S proteasome regulatory subunit RPN10 102 4e-22
7PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit... 94 2e-19
8GUAA_BRUME (Q8YBL2) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 35 0.067
9YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon ... 33 0.44
10Y760_HELPJ (Q9ZL83) UPF0144 protein jhp_0697 30 2.8
11CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC... 30 3.7
12SNUT3_XENTR (Q6DDA4) U4/U6.U5 tri-snRNP-associated protein 3 29 4.8
13MURE_RHIME (Q92NL6) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 29 6.3
14THIL_ARCFU (O29525) Probable thiamine-monophosphate kinase (EC 2... 29 6.3
15Y760_HELPY (O25455) UPF0144 protein HP0760 28 8.2

>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein)
          Length = 386

 Score =  177 bits (449), Expect = 1e-44
 Identities = 86/129 (66%), Positives = 94/129 (72%)
 Frame = +2

Query: 65  MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244
           MVLE T ICID SEWMRNGDYSPSR QAQ +AVNL+CGA TQSNPENTVG++T AGKGVR
Sbjct: 1   MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60

Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424
           VL TPTSDLG ILACMH                     KHRQNK Q+QRIIVF GSP+KY
Sbjct: 61  VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120

Query: 425 DXKVLETIG 451
           + K LE +G
Sbjct: 121 EKKALEIVG 129



to top

>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein)
          Length = 376

 Score =  112 bits (279), Expect = 6e-25
 Identities = 58/125 (46%), Positives = 76/125 (60%)
 Frame = +2

Query: 65  MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244
           MVLE+T +C+D SE+MRNGD+ P+R QAQ DAVN++C + T+SNPEN VG++T A     
Sbjct: 1   MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCE 59

Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424
           VL T T D G IL+ +H                     KHRQ K  + RII F+GSPV+ 
Sbjct: 60  VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119

Query: 425 DXKVL 439
           + K L
Sbjct: 120 NEKDL 124



to top

>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein) (Antisecretory
           factor 1) (AF) (ASF)
          Length = 377

 Score =  112 bits (279), Expect = 6e-25
 Identities = 58/125 (46%), Positives = 76/125 (60%)
 Frame = +2

Query: 65  MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244
           MVLE+T +C+D SE+MRNGD+ P+R QAQ DAVN++C + T+SNPEN VG++T A     
Sbjct: 1   MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCE 59

Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424
           VL T T D G IL+ +H                     KHRQ K  + RII F+GSPV+ 
Sbjct: 60  VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119

Query: 425 DXKVL 439
           + K L
Sbjct: 120 NEKDL 124



to top

>RPN10_SCHPO (O94444) 26S proteasome regulatory subunit rpn10|
          Length = 243

 Score =  106 bits (264), Expect = 3e-23
 Identities = 56/125 (44%), Positives = 68/125 (54%)
 Frame = +2

Query: 65  MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244
           MVLE T I ID SEWM NGDY P+RF+AQ D V++I       NPEN  G+MT      +
Sbjct: 1   MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60

Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424
           VL T T D G  L+ MH                     KHR+NK Q+QRI+ F+GSP+  
Sbjct: 61  VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120

Query: 425 DXKVL 439
           D K L
Sbjct: 121 DEKNL 125



to top

>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein) (54 kDa subunit of mu particle)
           (p54)
          Length = 396

 Score =  103 bits (258), Expect = 2e-22
 Identities = 53/121 (43%), Positives = 69/121 (57%)
 Frame = +2

Query: 65  MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244
           MVLE+T IC D S++ RNGDY P+R   Q D +NL+C    +SNPEN VG+MT +   V 
Sbjct: 1   MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VE 59

Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424
           VL T TSD G I + MH                     KHRQ K  + RI+VF+GSP+ +
Sbjct: 60  VLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINH 119

Query: 425 D 427
           +
Sbjct: 120 E 120



to top

>RPN10_YEAST (P38886) 26S proteasome regulatory subunit RPN10|
          Length = 268

 Score =  102 bits (254), Expect = 4e-22
 Identities = 54/118 (45%), Positives = 69/118 (58%)
 Frame = +2

Query: 65  MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244
           MVLE T + ID SE+ RNGD+  +RF+AQ D+V  I  A   SNPENTVG+++ AG   R
Sbjct: 1   MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60

Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPV 418
           VL T T++ G ILA +H                     KHRQNK Q QRI+ F+ SP+
Sbjct: 61  VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPI 118



to top

>PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A)
          Length = 420

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 51/125 (40%), Positives = 69/125 (55%)
 Frame = +2

Query: 65  MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244
           M  E T I +D S++MRNGD+ P+R QAQ DAV LIC +  Q NPENT+G+++ A     
Sbjct: 1   MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA--NTE 58

Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424
           VL T T+D+  I   +H                     +HRQ + Q+ RI+ FIGSP+  
Sbjct: 59  VLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILE 118

Query: 425 DXKVL 439
           D K L
Sbjct: 119 DEKEL 123



to top

>GUAA_BRUME (Q8YBL2) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 507

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = +1

Query: 109 DAERRLLAVPLPGAGRRRQ---PHLRRXDPVEPGEYGGRHD----DXRQGRARAC-HPHQ 264
           DA  +  AV LP   R R    PHLR    +  G++GGRHD      R    R C HPH 
Sbjct: 437 DAIWQAFAVLLPVQDRGRDGGWPHLRIRLRLARGDFGGRHDGGFLPLRHEFPRQCGHPHH 496

Query: 265 R--PRXDPR 285
           +  PR  PR
Sbjct: 497 QRSPRHQPR 505



to top

>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556|
          Length = 395

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
 Frame = +1

Query: 34  RLQRDPQRRXHGARDDXXLHRXLGVDAERRLLAV-PLPGAGRRRQPHLRRXDPVEPGEYG 210
           R+   P+R  HG          +GV A++R LAV P+P  G+ RQP  R      P    
Sbjct: 179 RVVHRPRREVHGGGQQRRQAASVGVPAQQRRLAVHPVP--GQLRQPARR-----YPRHIN 231

Query: 211 GRHDD--------XRQGRARACHPHQRPRXDP 282
           G H +         R    R  HPH RP   P
Sbjct: 232 GAHSERGDLLRPLQRPLHLRTRHPH-RPAPQP 262



to top

>Y760_HELPJ (Q9ZL83) UPF0144 protein jhp_0697|
          Length = 529

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 14/126 (11%)
 Frame = -3

Query: 358 ESQLSNLNSCSQVCFSSNFQPVHTGEDLAEVAG------GGDKHAHALAGXRHDAHRILR 197
           E +L  L    +  FS     +   +++A +AG      GGDK     AG  HD  + L 
Sbjct: 322 EDELKILIGKMRYRFSFGQNALQHSKEVALLAGLIAEQLGGDKKLARRAGILHDIGKALT 381

Query: 196 VRLGLGAADEVDGVGLRLEAGRRVVAVPHPLRVVYADXXRLEHHG--------CAAVGRA 41
             LG       D V L +E  +R    P  +  +YA      HHG        CA+V  A
Sbjct: 382 QELGR------DHVNLGVEVCKRHKEDPVVINAIYA------HHGHEEIMSVECASVCAA 429

Query: 40  AVEGSG 23
               +G
Sbjct: 430 DALSAG 435



to top

>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1099

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 204 FSGFDWVXAPQMRLTASACA--WKRDGE 127
           F+G D V  P+MR T       WKRDGE
Sbjct: 916 FAGVDTVLGPEMRSTGEVMGLDWKRDGE 943



to top

>SNUT3_XENTR (Q6DDA4) U4/U6.U5 tri-snRNP-associated protein 3|
          Length = 156

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +1

Query: 40  QRDPQRRXHGARDDXXLHRXLGVDAERRLLAVPLPGAGRRRQPHLRRXDPVEPGEYGGRH 219
           +R+ +R    +R+     R      ERR      P   R R P   R   + PG    R 
Sbjct: 12  RRERRRSRSASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSISPGRLKDRR 71

Query: 220 DDXRQ 234
           DD ++
Sbjct: 72  DDDKK 76



to top

>MURE_RHIME (Q92NL6) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 486

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 238 ALAGXRHDAHRILRVRLGLGAADEVDGVGLRLEAGRRVVAVPHPLR 101
           A+AG + D    +   L  GA+  V G G   EAG  V A+  P R
Sbjct: 45  AVAGSKADGAAYIADALSRGASAVVAGTGTPAEAGAPVFAISDPRR 90



to top

>THIL_ARCFU (O29525) Probable thiamine-monophosphate kinase (EC 2.7.4.16)|
           (Thiamine-phosphate kinase)
          Length = 296

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = -3

Query: 355 SQLSNLNSCSQVCFSSNFQPVHTGEDLAEVAGGGDKHAHALAGXRHDAHRILRVRLGLGA 176
           SQ SN+         S+  P     +L  + GGGD      A    D  RI RV  G G 
Sbjct: 219 SQSSNVKIVLDNIVLSHLSPAENALELF-LYGGGDFELVYTAKSSDDGIRIGRVERGKGV 277

Query: 175 ADEVDGVGLRLE 140
             E+DG    +E
Sbjct: 278 FAEIDGKTFEVE 289



to top

>Y760_HELPY (O25455) UPF0144 protein HP0760|
          Length = 529

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
 Frame = -3

Query: 259 GGDKHAHALAGXRHDAHRILRVRLGLGAADEVDGVGLRLEAGRRVVAVPHPLRVVYADXX 80
           GGDK     AG  HD  + L   LG       D V L +E  +R    P  +  +YA   
Sbjct: 361 GGDKKLARRAGILHDIGKALTQELGR------DHVNLGVEVCKRHKEDPVVINAIYA--- 411

Query: 79  RLEHHG--------CAAVGRAAVEGSG 23
              HHG        CA+V  A    +G
Sbjct: 412 ---HHGHEEILSVECASVCAADALSAG 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,220,292
Number of Sequences: 219361
Number of extensions: 807407
Number of successful extensions: 2690
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2683
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top