ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06e10 |
|---|---|
| Clone Library Name | barley_pub |
>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Multiubiquitin chain-binding protein) Length = 386 Score = 177 bits (449), Expect = 1e-44 Identities = 86/129 (66%), Positives = 94/129 (72%) Frame = +2 Query: 65 MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244 MVLE T ICID SEWMRNGDYSPSR QAQ +AVNL+CGA TQSNPENTVG++T AGKGVR Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60 Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424 VL TPTSDLG ILACMH KHRQNK Q+QRIIVF GSP+KY Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120 Query: 425 DXKVLETIG 451 + K LE +G Sbjct: 121 EKKALEIVG 129
>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Rpn10) (Multiubiquitin chain-binding protein) Length = 376 Score = 112 bits (279), Expect = 6e-25 Identities = 58/125 (46%), Positives = 76/125 (60%) Frame = +2 Query: 65 MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244 MVLE+T +C+D SE+MRNGD+ P+R QAQ DAVN++C + T+SNPEN VG++T A Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCE 59 Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424 VL T T D G IL+ +H KHRQ K + RII F+GSPV+ Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119 Query: 425 DXKVL 439 + K L Sbjct: 120 NEKDL 124
>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Rpn10) (Multiubiquitin chain-binding protein) (Antisecretory factor 1) (AF) (ASF) Length = 377 Score = 112 bits (279), Expect = 6e-25 Identities = 58/125 (46%), Positives = 76/125 (60%) Frame = +2 Query: 65 MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244 MVLE+T +C+D SE+MRNGD+ P+R QAQ DAVN++C + T+SNPEN VG++T A Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCE 59 Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424 VL T T D G IL+ +H KHRQ K + RII F+GSPV+ Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119 Query: 425 DXKVL 439 + K L Sbjct: 120 NEKDL 124
>RPN10_SCHPO (O94444) 26S proteasome regulatory subunit rpn10| Length = 243 Score = 106 bits (264), Expect = 3e-23 Identities = 56/125 (44%), Positives = 68/125 (54%) Frame = +2 Query: 65 MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244 MVLE T I ID SEWM NGDY P+RF+AQ D V++I NPEN G+MT + Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60 Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424 VL T T D G L+ MH KHR+NK Q+QRI+ F+GSP+ Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120 Query: 425 DXKVL 439 D K L Sbjct: 121 DEKNL 125
>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Multiubiquitin chain-binding protein) (54 kDa subunit of mu particle) (p54) Length = 396 Score = 103 bits (258), Expect = 2e-22 Identities = 53/121 (43%), Positives = 69/121 (57%) Frame = +2 Query: 65 MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244 MVLE+T IC D S++ RNGDY P+R Q D +NL+C +SNPEN VG+MT + V Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VE 59 Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424 VL T TSD G I + MH KHRQ K + RI+VF+GSP+ + Sbjct: 60 VLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINH 119 Query: 425 D 427 + Sbjct: 120 E 120
>RPN10_YEAST (P38886) 26S proteasome regulatory subunit RPN10| Length = 268 Score = 102 bits (254), Expect = 4e-22 Identities = 54/118 (45%), Positives = 69/118 (58%) Frame = +2 Query: 65 MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244 MVLE T + ID SE+ RNGD+ +RF+AQ D+V I A SNPENTVG+++ AG R Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60 Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPV 418 VL T T++ G ILA +H KHRQNK Q QRI+ F+ SP+ Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPI 118
>PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) Length = 420 Score = 94.0 bits (232), Expect = 2e-19 Identities = 51/125 (40%), Positives = 69/125 (55%) Frame = +2 Query: 65 MVLETTXICIDXSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTXAGKGVR 244 M E T I +D S++MRNGD+ P+R QAQ DAV LIC + Q NPENT+G+++ A Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA--NTE 58 Query: 245 VLVTPTSDLGXILACMHXXXXXXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 424 VL T T+D+ I +H +HRQ + Q+ RI+ FIGSP+ Sbjct: 59 VLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILE 118 Query: 425 DXKVL 439 D K L Sbjct: 119 DEKEL 123
>GUAA_BRUME (Q8YBL2) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 507 Score = 35.4 bits (80), Expect = 0.067 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +1 Query: 109 DAERRLLAVPLPGAGRRRQ---PHLRRXDPVEPGEYGGRHD----DXRQGRARAC-HPHQ 264 DA + AV LP R R PHLR + G++GGRHD R R C HPH Sbjct: 437 DAIWQAFAVLLPVQDRGRDGGWPHLRIRLRLARGDFGGRHDGGFLPLRHEFPRQCGHPHH 496 Query: 265 R--PRXDPR 285 + PR PR Sbjct: 497 QRSPRHQPR 505
>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556| Length = 395 Score = 32.7 bits (73), Expect = 0.44 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 9/92 (9%) Frame = +1 Query: 34 RLQRDPQRRXHGARDDXXLHRXLGVDAERRLLAV-PLPGAGRRRQPHLRRXDPVEPGEYG 210 R+ P+R HG +GV A++R LAV P+P G+ RQP R P Sbjct: 179 RVVHRPRREVHGGGQQRRQAASVGVPAQQRRLAVHPVP--GQLRQPARR-----YPRHIN 231 Query: 211 GRHDD--------XRQGRARACHPHQRPRXDP 282 G H + R R HPH RP P Sbjct: 232 GAHSERGDLLRPLQRPLHLRTRHPH-RPAPQP 262
>Y760_HELPJ (Q9ZL83) UPF0144 protein jhp_0697| Length = 529 Score = 30.0 bits (66), Expect = 2.8 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 14/126 (11%) Frame = -3 Query: 358 ESQLSNLNSCSQVCFSSNFQPVHTGEDLAEVAG------GGDKHAHALAGXRHDAHRILR 197 E +L L + FS + +++A +AG GGDK AG HD + L Sbjct: 322 EDELKILIGKMRYRFSFGQNALQHSKEVALLAGLIAEQLGGDKKLARRAGILHDIGKALT 381 Query: 196 VRLGLGAADEVDGVGLRLEAGRRVVAVPHPLRVVYADXXRLEHHG--------CAAVGRA 41 LG D V L +E +R P + +YA HHG CA+V A Sbjct: 382 QELGR------DHVNLGVEVCKRHKEDPVVINAIYA------HHGHEEIMSVECASVCAA 429 Query: 40 AVEGSG 23 +G Sbjct: 430 DALSAG 435
>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1099 Score = 29.6 bits (65), Expect = 3.7 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Frame = -1 Query: 204 FSGFDWVXAPQMRLTASACA--WKRDGE 127 F+G D V P+MR T WKRDGE Sbjct: 916 FAGVDTVLGPEMRSTGEVMGLDWKRDGE 943
>SNUT3_XENTR (Q6DDA4) U4/U6.U5 tri-snRNP-associated protein 3| Length = 156 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/65 (26%), Positives = 25/65 (38%) Frame = +1 Query: 40 QRDPQRRXHGARDDXXLHRXLGVDAERRLLAVPLPGAGRRRQPHLRRXDPVEPGEYGGRH 219 +R+ +R +R+ R ERR P R R P R + PG R Sbjct: 12 RRERRRSRSASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSISPGRLKDRR 71 Query: 220 DDXRQ 234 DD ++ Sbjct: 72 DDDKK 76
>MURE_RHIME (Q92NL6) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 486 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -3 Query: 238 ALAGXRHDAHRILRVRLGLGAADEVDGVGLRLEAGRRVVAVPHPLR 101 A+AG + D + L GA+ V G G EAG V A+ P R Sbjct: 45 AVAGSKADGAAYIADALSRGASAVVAGTGTPAEAGAPVFAISDPRR 90
>THIL_ARCFU (O29525) Probable thiamine-monophosphate kinase (EC 2.7.4.16)| (Thiamine-phosphate kinase) Length = 296 Score = 28.9 bits (63), Expect = 6.3 Identities = 23/72 (31%), Positives = 29/72 (40%) Frame = -3 Query: 355 SQLSNLNSCSQVCFSSNFQPVHTGEDLAEVAGGGDKHAHALAGXRHDAHRILRVRLGLGA 176 SQ SN+ S+ P +L + GGGD A D RI RV G G Sbjct: 219 SQSSNVKIVLDNIVLSHLSPAENALELF-LYGGGDFELVYTAKSSDDGIRIGRVERGKGV 277 Query: 175 ADEVDGVGLRLE 140 E+DG +E Sbjct: 278 FAEIDGKTFEVE 289
>Y760_HELPY (O25455) UPF0144 protein HP0760| Length = 529 Score = 28.5 bits (62), Expect = 8.2 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 8/87 (9%) Frame = -3 Query: 259 GGDKHAHALAGXRHDAHRILRVRLGLGAADEVDGVGLRLEAGRRVVAVPHPLRVVYADXX 80 GGDK AG HD + L LG D V L +E +R P + +YA Sbjct: 361 GGDKKLARRAGILHDIGKALTQELGR------DHVNLGVEVCKRHKEDPVVINAIYA--- 411 Query: 79 RLEHHG--------CAAVGRAAVEGSG 23 HHG CA+V A +G Sbjct: 412 ---HHGHEEILSVECASVCAADALSAG 435 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,220,292 Number of Sequences: 219361 Number of extensions: 807407 Number of successful extensions: 2690 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2683 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
