Clone Name | bart06e08 |
---|---|
Clone Library Name | barley_pub |
>gb|BT017960.1| Zea mays clone EL01N0523B04.c mRNA sequence Length = 1282 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 |||||||||||||||||||||||||| Sbjct: 346 ccgccgtacgtgccaccatacgtccc 371 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 417 ccgtacgtgccaccatacgtcccaccgacacctc 450 |||||||||||||| |||||||| ||||| |||| Sbjct: 544 ccgtacgtgccaccctacgtccccccgacgcctc 577 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 ||||| |||||||||||||||||||| Sbjct: 397 ccgccctacgtgccaccatacgtccc 422 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 ||||| |||||||||||||||||||| Sbjct: 295 ccgccctacgtgccaccatacgtccc 320 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 197 ccacggcaagccgcccaagcaccacc 222 |||| ||||||||||||||||||||| Sbjct: 159 ccacagcaagccgcccaagcaccacc 184 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtcccaccgacacctc 450 ||||||||||||||||| || ||||| ||||| |||| Sbjct: 250 ccgccgtacgtgccaccgtatgtcccgccgacgcctc 286
>emb|X60432.1|ZMPRP Z.mays PRP gene Length = 1402 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 |||||||||||||||||||||||||| Sbjct: 472 ccgccgtacgtgccaccatacgtccc 497 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 417 ccgtacgtgccaccatacgtcccaccgacacctc 450 |||||||||||||| |||||||| ||||| |||| Sbjct: 670 ccgtacgtgccaccctacgtccccccgacgcctc 703 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 ||||| |||||||||||||||||||| Sbjct: 523 ccgccctacgtgccaccatacgtccc 548 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 ||||| |||||||||||||||||||| Sbjct: 421 ccgccctacgtgccaccatacgtccc 446 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 197 ccacggcaagccgcccaagcaccacc 222 |||| ||||||||||||||||||||| Sbjct: 285 ccacagcaagccgcccaagcaccacc 310 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtcccaccgacacctc 450 ||||||||||||||||| || ||||| ||||| |||| Sbjct: 376 ccgccgtacgtgccaccgtatgtcccgccgacgcctc 412
>gb|AY105001.1| Zea mays PCO123892 mRNA sequence Length = 1144 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 |||||||||||||||||||||||||| Sbjct: 133 ccgccgtacgtgccaccatacgtccc 158 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 417 ccgtacgtgccaccatacgtcccaccgacacctc 450 |||||||||||||| |||||||| ||||| |||| Sbjct: 331 ccgtacgtgccaccctacgtccccccgacgcctc 364 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 ||||| |||||||||||||||||||| Sbjct: 184 ccgccctacgtgccaccatacgtccc 209 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtccc 439 ||||| |||||||||||||||||||| Sbjct: 82 ccgccctacgtgccaccatacgtccc 107 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 414 ccgccgtacgtgccaccatacgtcccaccgacacctc 450 ||||||||||||||||| || ||||| ||||| |||| Sbjct: 37 ccgccgtacgtgccaccgtatgtcccgccgacgcctc 73
>ref|XM_550375.1| Oryza sativa (japonica cultivar-group), mRNA Length = 992 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 195 caccacggcaagccgcccaagcaccacc 222 |||||||||||||||||| ||||||||| Sbjct: 191 caccacggcaagccgcccgagcaccacc 218
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 195 caccacggcaagccgcccaagcaccacc 222 |||||||||||||||||| ||||||||| Sbjct: 3455614 caccacggcaagccgcccgagcaccacc 3455587
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 195 caccacggcaagccgcccaagcaccacc 222 |||||||||||||||||| ||||||||| Sbjct: 72318 caccacggcaagccgcccgagcaccacc 72291
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 195 caccacggcaagccgcccaagcaccacc 222 |||||||||||||||||| ||||||||| Sbjct: 147168 caccacggcaagccgcccgagcaccacc 147141
>dbj|AK103637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134F12, full insert sequence Length = 1013 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 195 caccacggcaagccgcccaagcaccacc 222 |||||||||||||||||| ||||||||| Sbjct: 191 caccacggcaagccgcccgagcaccacc 218
>dbj|AK101305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033M04, full insert sequence Length = 992 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 195 caccacggcaagccgcccaagcaccacc 222 |||||||||||||||||| ||||||||| Sbjct: 191 caccacggcaagccgcccgagcaccacc 218
>dbj|AK059170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E12, full insert sequence Length = 1384 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 195 caccacggcaagccgcccaagcaccacc 222 |||||||||||||||||| ||||||||| Sbjct: 608 caccacggcaagccgcccgagcaccacc 635
>ref|NM_016148.1| Homo sapiens SH3 and multiple ankyrin repeat domains 1 (SHANK1), mRNA Length = 6643 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 3008 caccaccacccgccccaccac 3028
>ref|XM_539754.2| PREDICTED: Canis familiaris similar to POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B), transcript variant 1 (LOC482637), mRNA Length = 969 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 118 caccaccacccgccccaccac 138
>ref|XM_848360.1| PREDICTED: Canis familiaris similar to POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B), transcript variant 3 (LOC482637), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 376 caccaccacccgccccaccac 396
>ref|XM_862296.1| PREDICTED: Canis familiaris similar to POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B), transcript variant 4 (LOC482637), mRNA Length = 1167 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 316 caccaccacccgccccaccac 336
>gb|AC010325.7| Homo sapiens chromosome 19 clone CTD-2568A17, complete sequence Length = 166439 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 1694 caccaccacccgccccaccac 1674
>gb|AC008743.9| Homo sapiens chromosome 19 clone CTD-2560K21, complete sequence Length = 192097 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 168617 caccaccacccgccccaccac 168597
>gb|AF226728.1|AF226728 Homo sapiens somatostatin receptor-interacting protein splice variant b (SSTRIP) mRNA, complete cds Length = 4785 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 1150 caccaccacccgccccaccac 1170
>gb|AF163302.1|AF163302 Homo sapiens somatostatin receptor interacting protein splice variant a (SSTRIP) mRNA, complete cds Length = 6643 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 caccaccacccgccccaccac 200 ||||||||||||||||||||| Sbjct: 3008 caccaccacccgccccaccac 3028
>ref|XM_521711.1| PREDICTED: Pan troglodytes similar to mucin glycoprotein (LOC466311), mRNA Length = 6897 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctgccctgccagagtctgc 65 |||||||||||||||||||| Sbjct: 5081 cctgccctgccagagtctgc 5062
>ref|NM_194108.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1533 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 cgggtcgtacagcaactgcccgcc 139 ||||||||||||| |||||||||| Sbjct: 171 cgggtcgtacagccactgcccgcc 148
>ref|XM_475067.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1020 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgccgtcgtcctgctcctgc 105 |||||||||||||||||||| Sbjct: 9 cgccgtcgtcctgctcctgc 28
>ref|NM_015710.3| Homo sapiens glioma tumor suppressor candidate region gene 2 (GLTSCR2), mRNA Length = 1567 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 38 ccaccaacgccactgcctcc 19
>gb|AY535000.1| Homo sapiens preS1 binding protein mRNA, complete cds Length = 1437 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 29 ccaccaacgccactgcctcc 10
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gcttgttggcgtcgccgtcg 93 |||||||||||||||||||| Sbjct: 58284 gcttgttggcgtcgccgtcg 58265
>gb|BC014009.2| Homo sapiens glioma tumor suppressor candidate region gene 2, mRNA (cDNA clone IMAGE:4039964), partial cds Length = 1525 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 23 ccaccaacgccactgcctcc 4
>ref|XM_851161.1| PREDICTED: Canis familiaris hypothetical protein LOC606920 (LOC606920), mRNA Length = 1071 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 cggcccgccgtcggggccca 243 |||||||||||||||||||| Sbjct: 553 cggcccgccgtcggggccca 534
>gb|BC013235.1| Homo sapiens glioma tumor suppressor candidate region gene 2, mRNA (cDNA clone IMAGE:4154770) Length = 1499 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>ref|XM_965081.1| PREDICTED: Tribolium castaneum similar to CG10737-PB, isoform B (LOC658718), mRNA Length = 2487 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tacgtgccgcccacgccgcc 346 |||||||||||||||||||| Sbjct: 295 tacgtgccgcccacgccgcc 314
>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 3/10 Length = 348475 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 cgccgtcgccaccgtacattccgc 378 |||||||||||||| ||||||||| Sbjct: 195852 cgccgtcgccaccgaacattccgc 195829
>gb|AC139749.4| Homo sapiens chromosome 11, clone RP13-870H17, complete sequence Length = 131676 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctgccctgccagagtctgc 65 |||||||||||||||||||| Sbjct: 118447 cctgccctgccagagtctgc 118428
>gb|BC010095.2| Homo sapiens glioma tumor suppressor candidate region gene 2, mRNA (cDNA clone MGC:19683 IMAGE:3501649), complete cds Length = 1601 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 72 ccaccaacgccactgcctcc 53
>gb|AC008745.7| Homo sapiens chromosome 19 clone CTD-2571L23, complete sequence Length = 180531 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 25802 ccaccaacgccactgcctcc 25783
>emb|CR624154.1| full-length cDNA clone CS0DF009YJ13 of Fetal brain of Homo sapiens (human) Length = 1488 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 30 ccaccaacgccactgcctcc 11
>emb|CR620917.1| full-length cDNA clone CS0DI087YH18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1292 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 25 ccaccaacgccactgcctcc 6
>emb|CR620661.1| full-length cDNA clone CS0DI043YL01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1432 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 20 ccaccaacgccactgcctcc 1
>emb|CR619993.1| full-length cDNA clone CS0DE004YD06 of Placenta of Homo sapiens (human) Length = 1360 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>emb|CR618849.1| full-length cDNA clone CS0DI001YD06 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1427 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>emb|CR617912.1| full-length cDNA clone CS0DI001YJ07 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1439 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 23 ccaccaacgccactgcctcc 4
>emb|CR615162.1| full-length cDNA clone CS0DD008YE23 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1456 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 20 ccaccaacgccactgcctcc 1
>emb|CR614362.1| full-length cDNA clone CS0DJ001YF23 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1462 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 30 ccaccaacgccactgcctcc 11
>emb|CR614208.1| full-length cDNA clone CS0DF011YL14 of Fetal brain of Homo sapiens (human) Length = 1488 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 30 ccaccaacgccactgcctcc 11
>emb|CR609531.1| full-length cDNA clone CS0DI034YL01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1477 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 30 ccaccaacgccactgcctcc 11
>gb|AF078726.2| Bovine herpesvirus 5 strain N565 glycoprotein B gene, complete cds Length = 3113 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gcttgttggcgtcgccgtcg 93 |||||||||||||||||||| Sbjct: 1893 gcttgttggcgtcgccgtcg 1874
>emb|CR611227.1| full-length cDNA clone CS0DH007YH10 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1359 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>emb|CR604535.1| full-length cDNA clone CS0DF002YN23 of Fetal brain of Homo sapiens (human) Length = 1463 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 30 ccaccaacgccactgcctcc 11
>emb|CR604074.1| full-length cDNA clone CS0DF029YF15 of Fetal brain of Homo sapiens (human) Length = 1250 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 25 ccaccaacgccactgcctcc 6
>emb|CR603780.1| full-length cDNA clone CS0DA011YI11 of Neuroblastoma of Homo sapiens (human) Length = 1421 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 20 ccaccaacgccactgcctcc 1
>emb|CR602925.1| full-length cDNA clone CS0DH005YN03 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1481 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>emb|CR602831.1| full-length cDNA clone CS0DC006YP18 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1426 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 23 ccaccaacgccactgcctcc 4
>emb|CR601341.1| full-length cDNA clone CS0DI043YN01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1440 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>emb|CR600868.1| full-length cDNA clone CS0DI026YL01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1457 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 23 ccaccaacgccactgcctcc 4
>emb|CR598229.1| full-length cDNA clone CS0DI083YF19 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1433 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 23 ccaccaacgccactgcctcc 4
>emb|CR597440.1| full-length cDNA clone CS0DI043YL19 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1451 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 20 ccaccaacgccactgcctcc 1
>emb|CR595527.1| full-length cDNA clone CS0DC001YI14 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1467 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 20 ccaccaacgccactgcctcc 1
>emb|CR590467.1| full-length cDNA clone CS0DC026YB14 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1477 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ccactgaccggcgccatggcctgc 50 |||| ||||||||||||||||||| Sbjct: 3625253 ccacagaccggcgccatggcctgc 3625276
>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence Length = 131548 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 44525 ccaccaacgccactgcctcc 44506
>gb|AF434665.1|AF434665 Petromyzon marinus Hox1w (hox1w) mRNA, partial cds Length = 1212 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctccgccg 419 ||||||||||||||||| |||||| Sbjct: 479 ccaccaacgccactgccaccgccg 456
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cgtcctgctcctgccgggcg 111 |||||||||||||||||||| Sbjct: 902780 cgtcctgctcctgccgggcg 902761
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 caccaccacccgccccaccacggc 203 |||||||||||| ||||||||||| Sbjct: 3939905 caccaccacccggcccaccacggc 3939928
>ref|NM_175452.2| Mus musculus gap junction membrane channel protein alpha 12 (Gja12), transcript variant 2, mRNA Length = 2190 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cccacgccgcgcccaccgcc 286 |||||||||||||||||||| Sbjct: 1029 cccacgccgcgcccaccgcc 1048
>ref|NM_080454.2| Mus musculus gap junction membrane channel protein alpha 12 (Gja12), transcript variant 1, mRNA Length = 2172 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cccacgccgcgcccaccgcc 286 |||||||||||||||||||| Sbjct: 1011 cccacgccgcgcccaccgcc 1030
>gb|S45791.1| band 3-related protein=renal anion exchanger AE2 homolog [rabbits, New Zealand White, ileal epithelial cells, mRNA, 3964 nt] Length = 3964 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgcccaagcaccaccccg 225 |||||||||||||||||||| Sbjct: 3509 gccgcccaagcaccaccccg 3528
>dbj|AK046421.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230382L12 product:gap junction membrane channel protein alpha 12, full insert sequence Length = 2190 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cccacgccgcgcccaccgcc 286 |||||||||||||||||||| Sbjct: 1029 cccacgccgcgcccaccgcc 1048
>dbj|AK046609.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430204K21 product:gap junction membrane channel protein alpha 12, full insert sequence Length = 2172 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cccacgccgcgcccaccgcc 286 |||||||||||||||||||| Sbjct: 1011 cccacgccgcgcccaccgcc 1030
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 cgggtcgtacagcaactgcccgcc 139 ||||||||||||| |||||||||| Sbjct: 684641 cgggtcgtacagccactgcccgcc 684618
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgccgtcgtcctgctcctgc 105 |||||||||||||||||||| Sbjct: 217063 cgccgtcgtcctgctcctgc 217082
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 cgccgtcgccaccgtacattccgc 378 |||||||||||||| ||||||||| Sbjct: 892239 cgccgtcgccaccgaacattccgc 892216
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ctccgccgtacgggcctccc 308 |||||||||||||||||||| Sbjct: 1900331 ctccgccgtacgggcctccc 1900350
>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence Length = 162101 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 87028 ccaccaacgccactgcctcc 87047
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 cgggtcgtacagcaactgcccgcc 139 ||||||||||||| |||||||||| Sbjct: 23172 cgggtcgtacagccactgcccgcc 23149
>gb|AF182076.1|AF182076 Homo sapiens glioma tumor suppressor candidate region protein 2 (GLTSCR2) mRNA, complete cds Length = 1516 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 36 ccaccaacgccactgcctcc 17
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 cgggtcgtacagcaactgcccgcc 139 ||||||||||||| |||||||||| Sbjct: 4448 cgggtcgtacagccactgcccgcc 4425
>dbj|AK024486.1| Homo sapiens mRNA for FLJ00085 protein, partial cds Length = 4186 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 24 ccaccaacgccactgcctcc 5
>gb|BC039869.1| Homo sapiens, Similar to glioma tumor suppressor candidate region gene 2, clone IMAGE:4179633, mRNA Length = 1500 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 25 ccaccaacgccactgcctcc 6
>dbj|AK108919.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H06, full insert sequence Length = 1134 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gccaccaacgccactgcctc 414 |||||||||||||||||||| Sbjct: 610 gccaccaacgccactgcctc 629
>gb|BC006311.2| Homo sapiens glioma tumor suppressor candidate region gene 2, mRNA (cDNA clone MGC:12572 IMAGE:4111480), complete cds Length = 1510 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 35 ccaccaacgccactgcctcc 16
>gb|BC013203.1| Homo sapiens glioma tumor suppressor candidate region gene 2, mRNA (cDNA clone IMAGE:4178912) Length = 1525 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccaccaacgccactgcctcc 415 |||||||||||||||||||| Sbjct: 41 ccaccaacgccactgcctcc 22
>emb|AL645854.10| Mouse DNA sequence from clone RP23-192P17 on chromosome 11, complete sequence Length = 211829 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cccacgccgcgcccaccgcc 286 |||||||||||||||||||| Sbjct: 160070 cccacgccgcgcccaccgcc 160051
>emb|AJ276435.1|MMU276435 Mus musculus Cx47 gene for connexin 47 Length = 1380 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cccacgccgcgcccaccgcc 286 |||||||||||||||||||| Sbjct: 932 cccacgccgcgcccaccgcc 951
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cgccgtcgtcctgctcctgc 105 |||||||||||||||||||| Sbjct: 99247 cgccgtcgtcctgctcctgc 99266
>dbj|AB070942.1| Streptomyces avermitilis polyketide-2 biosynthetic gene cluster Length = 27522 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ctccgccgtacgggcctccc 308 |||||||||||||||||||| Sbjct: 10131 ctccgccgtacgggcctccc 10150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,852,604 Number of Sequences: 3902068 Number of extensions: 2852604 Number of successful extensions: 62621 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61718 Number of HSP's gapped (non-prelim): 903 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)