ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetati... 49 5e-06
2S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetati... 49 5e-06
3VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetati... 48 8e-06
4PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (A... 44 1e-04
5VSP2_ARATH (O82122) Vegetative storage protein 2 precursor 43 3e-04
6VSP1_ARATH (O49195) Vegetative storage protein 1 precursor 43 3e-04
7NIFD_METBA (P55170) Nitrogenase molybdenum-iron protein alpha ch... 28 6.8

>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage|
           protein A)
          Length = 254

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = +2

Query: 11  CDSWVLGVEAHNVRGWKTVPASCEGYXGHYMLGSHFRRDSXVVIDQALAY 160
           C SW L VEAHN+ G++T+P  C      Y+ G  +R DS  V  QA  Y
Sbjct: 42  CASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFY 91



to top

>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein VSP25) (Fragment)
          Length = 291

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = +2

Query: 11  CDSWVLGVEAHNVRGWKTVPASCEGYXGHYMLGSHFRRDSXVVIDQALAY 160
           C SW L VEAHN+ G++T+P  C      Y+ G  +R DS  V  QA  Y
Sbjct: 39  CASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFY 88



to top

>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 23/50 (46%), Positives = 28/50 (56%)
 Frame = +2

Query: 11  CDSWVLGVEAHNVRGWKTVPASCEGYXGHYMLGSHFRRDSXVVIDQALAY 160
           C S+ L VEAHN+R +KT+P  C      Y+ G  FR DS  V  QA  Y
Sbjct: 43  CASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFY 92



to top

>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 5   MACDSWVLGVEAHNVRGWKTVPASCEGYXGHYMLGSHFRRDSXVVIDQALAY 160
           + C +W   VE +N+  WKT+P  C  Y   YM+G  ++ +   V D+A  Y
Sbjct: 41  LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEY 92



to top

>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor|
          Length = 265

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 11  CDSWVLGVEAHNVRGWKTVPASCEGYXGHYMLGS-HFRRDSXVVIDQALAY 160
           C SW LGVE  N+  + TVPA+C+ Y   Y++ S  ++ DS  V  +A  Y
Sbjct: 52  CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFY 102



to top

>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor|
          Length = 270

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 11  CDSWVLGVEAHNVRGWKTVPASCEGYXGHYMLGS-HFRRDSXVVIDQALAY 160
           C SW LGVE  N+  + TVPA+C+ Y   Y++ S  ++ DS  V  +A  Y
Sbjct: 57  CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFY 107



to top

>NIFD_METBA (P55170) Nitrogenase molybdenum-iron protein alpha chain (EC|
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase)
          Length = 532

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 35  EAHNVRGWKTVPASCEGYXGHYMLGSH 115
           EA    G K +PA CEGY G      H
Sbjct: 168 EAEKEHGIKVIPARCEGYRGVSQSAGH 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,473,961
Number of Sequences: 219361
Number of extensions: 181014
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top