>TILS_BRAJA (Q9XBG6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 361

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 23/55 (41%), Positives = 29/55 (52%)
 Frame = +1

Query: 247 DARSLGRCSAVSRRFNALVPLVDDACLRIDRVIAADDAPAGPRQRGVISGLLKTV 411
           DARSL R +A   R NA V ++ D   R  R+   DDAP GP  R   +G   T+
Sbjct: 218 DARSLARLAARLARANAAVEVLTDGAERFLRLRDRDDAPHGPDMRSFEAGAFATL 272

>VIT_ICHUN (Q91062) Vitellogenin precursor (VTG) [Contains: Lipovitellin LV-1N;|
            Lipovitellin LV-1C; Lipovitellin LV-2]
          Length = 1823

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 23/77 (29%), Positives = 41/77 (53%)
 Frame = -2

Query: 371  GPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRSTSESGTLSKW 192
            GP   SS++ + S    +S++   S +K   T + RP+  +S+S     S+S S + S  
Sbjct: 1214 GPQSHSSSSSSSSSSSSSSASKSFSTVKPPMTRKPRPARSSSSSSSSDSSSSSSSSSSSS 1273

Query: 191  SSPCARSRSSANTRCLD 141
            SS  + S SS+ ++ L+
Sbjct: 1274 SSSSSSSSSSSESKSLE 1290

>VE2_HPV5B (P26545) Regulatory protein E2|
          Length = 514

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = -2

Query: 359 ASSAAMTRSMRRQASSTSGT------SALKRRETAEQRPSERASASLLKMRSTSESGTLS 198
           ++S  +T S + Q + T G       S+  RR   +QR S     S  + RS S+S T +
Sbjct: 229 STSRQLTTSKQPQQTETRGRRYGRRPSSKSRRSQTQQRRSRSRHRSRSRSRSRSKSQTHT 288

Query: 197 KWSSPCARSRSSANTRCL 144
            WS+  +RS S   TR L
Sbjct: 289 TWSTTRSRSTSVGKTRAL 306

>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)|
          Length = 220

 Score = 34.7 bits (78), Expect = 0.18
 Identities = 22/57 (38%), Positives = 33/57 (57%)
 Frame = -2

Query: 356 SSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRSTSESGTLSKWSS 186
           SS++ + S   QAS+TS +S      +A+   SE +S+S     S+SES + S WSS
Sbjct: 168 SSSSSSSSASNQASATSSSSV-----SADGSESESSSSSSSSSSSSSESSSSSSWSS 219

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = -2

Query: 425 STARSTVLRRPEMTPRWRGPAGASSAAMTRSMRRQASSTSGT-------SALKRRETAEQ 267
           S+A S    + E T +      +++ A T++     S+T+         SA  R ETA +
Sbjct: 388 SSASSASASKDEATRQASAAKSSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAK 447

Query: 266 RPSERASASLLKMRSTSESGTLSKWSSPCARSRSSANT 153
           R  + ASA  L+  ST++ G +   S+  + S + A T
Sbjct: 448 RAEDIASAVALEDASTTKKGIVQLSSATNSTSETLAAT 485



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = -2

Query: 371 GPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRSTSESGTLSKW 192
           G A AS+ A  +S    ASS S T+  K  E  EQ  +   SAS  K   T+   + +  
Sbjct: 314 GQASASATAAGKSAESAASSAS-TATTKAGEATEQASAAARSASAAKTSETNAKASETSA 372

Query: 191 SSPCARSRSSANT 153
            S    + SSA++
Sbjct: 373 ESSKTAAASSASS 385



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -2

Query: 365 AGASSAAMTRSMRRQASSTSGTSALKRRE----TAEQRPSERASASLLKMRSTSESGTLS 198
           A ++SA    S  + ASS++GT++ K  E     A    S+ A+A+      TSE+   +
Sbjct: 154 AASTSAGQAASSAQSASSSAGTASTKATEASKSAAAAESSKSAAATSAGAAKTSETNASA 213

Query: 197 KWSSPCARSRSSANTR 150
              S  A S S+A T+
Sbjct: 214 SLQS-AATSASTATTK 228

>ATX7_MOUSE (Q8R4I1) Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog)|
          Length = 867

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -2

Query: 437 PKGLSTARSTVL-RRPEMTPRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRP 261
           P GLS+  S+ L R+P+     +      S+A++ +    +SSTSG S  KR+ ++   P
Sbjct: 635 PSGLSSVPSSPLSRKPQKWKPSKSIRPKESSALSTNCHNASSSTSGGSGKKRKNSS---P 691

Query: 260 SERASASLLKMRSTSESGTLSKWSSPC 180
               S+S     S+S S +++ +   C
Sbjct: 692 LLVPSSSSSSSSSSSSSHSVNSFRKNC 718

>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued) (p135)
          Length = 1278

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 437 PKGLSTARSTVLRRPEMT-PRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRP 261
           PK   TAR T  RRP+ T P   G AGASS     S+    S+++G  +     T  Q P
Sbjct: 136 PKKAPTARKTTTRRPKPTRPASTGVAGASS-----SLGPSGSASAGELSSSEPSTPAQTP 190

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = -2

Query: 425 STARSTVLRRPEMTP---RWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSE 255
           ST  ST    P  T        P+  S++  + S    ++STS +S      +    PS 
Sbjct: 171 STLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSS 230

Query: 254 RASASLLKMRSTSESGTLSKWSSPCARSRSSANT 153
            +++S L   STS S T +  SS    S S++ +
Sbjct: 231 TSTSSSLT--STSSSSTSTSQSSTSTSSSSTSTS 262



 Score = 30.4 bits (67), Expect = 3.5
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
 Frame = -2

Query: 425 STARSTVLRRPEMTPRWRGPAGASSAAMTRSMRRQA---SSTSGTSALKRRETAEQRPSE 255
           ST+ S+    P  T         SS++ + S    +   SSTS +S+L    ++    S+
Sbjct: 190 STSPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQ 249

Query: 254 RASASLLKMRSTSESGTLSKWS----SPCARSRSSANT 153
            ++++     STS S T +  S    SP ++S S+++T
Sbjct: 250 SSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASST 287

>MNR2_YEAST (P35724) Manganese resistance protein MNR2|
          Length = 969

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
 Frame = -2

Query: 446 SQWPKGLSTARSTVLRRPEM---TPRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRET 276
           SQ  +G  +  STV  +P M   TP ++ PAG   +   RS+    S +   S LKRR++
Sbjct: 106 SQPREGPQSVSSTVQPQPIMKFSTPSYKKPAGLRPSDQNRSLVSDLSPSELESWLKRRKS 165

Query: 275 A------EQRPSERASAS 240
                  E  P++R  ++
Sbjct: 166 VHKSFVDENSPTDRRQSN 183

>YLU2_PICAN (P34735) Hypothetical protein in LEU2 3'region (Fragment)|
          Length = 373

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -2

Query: 359 ASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRSTSESGTLSKW-SSP 183
           +SSA  + S    A+STS TS      ++    S  +++S  K  S+ +S T+S   SSP
Sbjct: 109 SSSAQSSHSSTDDATSTSSTST---TSSSSSSLSSSSTSSSSKQSSSPQSSTMSSTDSSP 165

Query: 182 CARSRSSANT 153
            + S S+++T
Sbjct: 166 TSSSLSASST 175

>VE2_HPV17 (P36785) Regulatory protein E2|
          Length = 452

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
 Frame = -2

Query: 434 KGLS-TARSTVLRRPEMTPRWRGPAGASSAAMTRSMR------------RQASSTSGTSA 294
           +GLS T+ ST   +     R+R  A + +A  TR  R            RQA S  G   
Sbjct: 224 RGLSATSVSTRTTQRTSPRRYRRKASSPTATTTRHKRQDIRRSRSTSRGRQAISRGGERR 283

Query: 293 LKRRETAEQRPSERASASLLKMRSTSESG-TLSKWSSPCARSRSSANTR 150
            +RRE +  R S R   S  + R  S  G T    S   +RSRS + +R
Sbjct: 284 QRRRERSYSRDSSR---SPNRGRGGSSGGPTTRSQSRSLSRSRSRSRSR 329

>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1798

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = -2

Query: 395  PEMTPRWRGPA----GASSAAMTRSMRRQASST--SGTSALKRRETAEQRPSERASASLL 234
            P M  R RG +    GA++ A++    R+A     SG S  KR      +  + ASA+ L
Sbjct: 997  PAMETRGRGTSQLAEGATAKAISDLAVRRARHRLLSGDSTEKRTARPVNKVIKSASATAL 1056

Query: 233  KMRSTSESGTLSKWSSPCARSRSSANTRCLD 141
             +   SE  T S  +SP +    S+N    D
Sbjct: 1057 SLLIPSEHHTCSPLASPMSPHSQSSNPSSRD 1087

>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC|
           3.1.3.16) (Neuronal tyrosine threonine phosphatase 1)
          Length = 663

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -2

Query: 371 GPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRS 222
           G + ++S++ + S    +SS+S +S L+RR+     P E A+ +  K RS
Sbjct: 576 GSSSSNSSSSSSSSSSSSSSSSSSSDLRRRDVRTGWPEEPAADAQFKRRS 625

>YSR2_CAEEL (Q09950) Hypothetical protein F59B10.2|
          Length = 482

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = -2

Query: 374 RGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRSTSESGTLSK 195
           R PA A +A +    + +  +     A K++E     P+E +  S     STSES T S+
Sbjct: 175 RKPAPARTAPIVVEKKIEKPAVKEQKARKKKEKTPT-PTESSFESSSDSSSTSESSTSSE 233

Query: 194 WSSPCARSRSSANT 153
            SS  + S S + +
Sbjct: 234 SSSSASESESESKS 247

>SORC2_MOUSE (Q9EPR5) VPS10 domain-containing receptor SorCS2 precursor|
          Length = 1159

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
 Frame = +1

Query: 118  GILQSRMQSRHRVFAEDLLLAQGEDHFDSVPDSLVLLIFNKLADARSL---GRCSAVSRR 288
            G++ +R+ S+     E+LL+   +    ++ D  VLL   +    RSL    R +AV + 
Sbjct: 985  GLVVTRLLSKETSIPEELLVTVVKPGLPTIADLYVLLPLPRPTRKRSLTSDKRLAAVQQA 1044

Query: 289  FNA-LVPLVDDACLRIDRVIAADDAPAGPRQRGVISGLLKTVLLAVLKPF 435
             N+  +  +    LRI  ++   D   GP++ G   G    V+L V+  F
Sbjct: 1045 LNSHRISFILRGGLRI--LVELRDTDTGPQRPGGSGGYWAVVVLFVIGLF 1092

>ESC2_ASHGO (Q756K3) Protein ESC2 (Establishes silent chromatin protein 2)|
          Length = 407

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = -2

Query: 425 STARSTVLRRPEMTPRWRGPAGASSAAMTRSMRRQASSTSGTSA-----LKRRETAEQRP 261
           S A+   L        WR  A  SS + +      + S+SG S       KR+ T EQ+P
Sbjct: 67  SEAKGDTLATKRGRSSWRRGASESSRSSSLGSSSPSDSSSGRSLSPVRPAKRKRTDEQQP 126

Query: 260 SERASASLLKMRSTSE 213
              A+  L +M    E
Sbjct: 127 ESEANRFLAEMERDIE 142

>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner|
           cell wall protein)
          Length = 238

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 22/70 (31%), Positives = 40/70 (57%)
 Frame = -2

Query: 359 ASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRSTSESGTLSKWSSPC 180
           +SSA+ + S   +ASS+  T A     ++  + S  +++S  K  S+S + + SK SS  
Sbjct: 94  SSSASSSASSSSKASSS--TKASSSSASSSTKASSSSASSSTKASSSSAAPSSSKASSTE 151

Query: 179 ARSRSSANTR 150
           + S SS++T+
Sbjct: 152 SSSSSSSSTK 161

>RSP5_YEAST (P39940) E3 ubiquitin--protein ligase RSP5 (EC 6.3.2.-)|
          Length = 809

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 19/81 (23%), Positives = 38/81 (46%)
 Frame = -2

Query: 395 PEMTPRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMRSTS 216
           P  +P  + P+G ++++ T +     SST+ T+      T     S  +  +   + ST 
Sbjct: 139 PSSSPHSQAPSGHTASSSTNT-----SSTTRTNGHSTSSTRNHSTSHPSRGTAQAVESTL 193

Query: 215 ESGTLSKWSSPCARSRSSANT 153
           +SGT +  ++     RS+ +T
Sbjct: 194 QSGTTAATNTATTSHRSTNST 214

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 374 RGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPSERASASLLKMR-STSESGT 204
           +GPA A      R  RRQA++++ T+     +T   +P+  A  +  + R S +++G+
Sbjct: 109 QGPAAAGGRGQARHGRRQAAASAATTVSAAPQTGATKPAATAKTTPQRPRGSDADAGS 166

>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1280

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 437 PKGLSTARSTVLRRPEMT-PRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRP 261
           PK   TAR T  RRP+ T P   G AG SS     S+    S+++G  +     T  Q P
Sbjct: 136 PKKAPTARKTTTRRPKPTRPASTGVAGPSS-----SLGPSGSASAGELSSSEPSTPAQTP 190

>CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 290 KRRETAEQRPSERASASLLKMRSTSESGTLSKWSS-PCARSRSSANTRCLD 141
           KRR   E+R  ERA     + RS S S   S+ S   C+RSR    +R  D
Sbjct: 271 KRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRD 321

>VE2_HPV38 (Q80910) Regulatory protein E2|
          Length = 441

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 30/96 (31%), Positives = 44/96 (45%)
 Frame = -2

Query: 437 PKGLSTARSTVLRRPEMTPRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRPS 258
           P G ST  ++    PE +         S  A  R   R+ASS S TS  +R+   E   +
Sbjct: 204 PVGDSTDSASRAALPEPSTSVSPERPPSQTA--RRYGRKASSPSTTSRRQRKGQRETTGT 261

Query: 257 ERASASLLKMRSTSESGTLSKWSSPCARSRSSANTR 150
           +R   S  + RST+  G  ++ SS  +R  S + TR
Sbjct: 262 QRRRKSRSRSRSTNRGGRDTRRSS--SRGSSVSPTR 295

>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1281

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 437 PKGLSTARSTVLRRPEMT-PRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRP 261
           PK   TAR T  RRP+ T P   G AG SS     S+    S+++G  +     T  Q P
Sbjct: 136 PKKAPTARKTTTRRPKPTRPASTGVAGPSS-----SLGPSGSASAGELSSSEPSTPAQTP 190

>VTNC_MOUSE (P29788) Vitronectin precursor (Serum spreading factor) (S-protein)|
          Length = 478

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
 Frame = -2

Query: 401 RRPEMTPR-WRGPAGASSAAMTRSMRRQASSTSGTSALK---RRETAEQRPSERASASLL 234
           R P+   R W G  G   AAM   +    S +    A K   +R + ++  S R      
Sbjct: 329 REPQFISRNWHGVPGKVDAAMAGRIYVTGSLSHSAQAKKQKSKRRSRKRYRSRRGRGHRR 388

Query: 233 KMRSTSESGTLSKWSSPCARSRSSANT-RCLDCILDWRIP 117
              S S   + S W S  +   S   T    D  +DW +P
Sbjct: 389 SQSSNSRRSSRSIWFSLFSSEESGLGTYNNYDYDMDWLVP 428

>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)|
          Length = 892

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -2

Query: 437 PKGLSTARSTVL-RRPEMTPRWRGPAGASSAAMTRSMRRQASSTSGTSALKRRETAEQRP 261
           P GLS+  S+ + R+P+     +      S+  + + +  +SSTSG S  KR+ ++    
Sbjct: 656 PSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTSGGSGKKRKNSSPLLV 715

Query: 260 SERASASLLKMRSTSESGTLSKWSSPC 180
              +S+S     S+S S ++  +   C
Sbjct: 716 HSSSSSS----SSSSSSHSMESFRKNC 738


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,604,258
Number of Sequences: 219361
Number of extensions: 512970
Number of successful extensions: 2766
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2753
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)