ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06e01 |
|---|---|
| Clone Library Name | barley_pub |
>NHR3_CAEEL (Q9XTJ4) Nuclear hormone receptor family member nhr-3| Length = 463 Score = 33.1 bits (74), Expect = 0.18 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +3 Query: 36 GTVRRASVAVAAGKAP-LPRLEGASEELRAAAAQSLDWAPARRRVSAAFAPVLPTLDHWL 212 G++++ SV G P L + + S++ + + D AP R S VL TL Sbjct: 142 GSIKKVSVGSILGDLPCLNKFKDDSDDAATSPSSRADSAPMDLRPSFIDESVLTTLT--- 198 Query: 213 FKMAPKGIQMEENFETNSQGV 275 ++ IQ+++NFETN Q + Sbjct: 199 -EIENIVIQLQDNFETNQQSL 218
>CAF1B_MOUSE (Q9D0N7) Chromatin assembly factor 1 subunit B (CAF-1 subunit B)| (Chromatin assembly factor I p60 subunit) (CAF-I 60 kDa subunit) (CAF-Ip60) Length = 572 Score = 32.3 bits (72), Expect = 0.30 Identities = 28/79 (35%), Positives = 42/79 (53%) Frame = +3 Query: 6 PTRHAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDWAPARRRVSAAFAP 185 PT + AP A ++ + A+ AGK+PLP + + E+ A Q++ AP RRV+ Sbjct: 443 PTTQSPAPSA--IKDSPSAIPAGKSPLP--QPSEEKTLQPAGQNMK-APQPRRVT----- 492 Query: 186 VLPTLDHWLFKMAPKGIQM 242 L TL W K AP+ I + Sbjct: 493 -LNTLQTW-GKTAPRRINL 509
>SYS_BRUSU (Q8G139) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 427 Score = 30.0 bits (66), Expect = 1.5 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Frame = +3 Query: 15 HAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDW----APARRRVSAAFA 182 H G +A RR + + GKA + G +E+L+A + D+ RR+S + Sbjct: 40 HVGKVQAAQERRNAASKEIGKAMAAKDMGTAEKLKAEVGELKDFLAHAEEDERRLSKELS 99 Query: 183 PVLPTLDHWLFKMAPKGIQMEENFETNSQG 272 L T+ + P G +N E G Sbjct: 100 DALSTIPNIPLDDVPLGKDESDNVELRRIG 129
>SYS_BRUME (Q8YGS6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 427 Score = 30.0 bits (66), Expect = 1.5 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Frame = +3 Query: 15 HAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDW----APARRRVSAAFA 182 H G +A RR + + GKA + G +E+L+A + D+ RR+S + Sbjct: 40 HVGKVQAAQERRNAASKEIGKAMAAKDMGTAEKLKAEVGELKDFLAHAEEDERRLSKELS 99 Query: 183 PVLPTLDHWLFKMAPKGIQMEENFETNSQG 272 L T+ + P G +N E G Sbjct: 100 DALSTIPNIPLDDVPLGKDESDNVELRRIG 129
>PRXC_STRLI (P49323) Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride| peroxidase) (CPO-L) (Chloroperoxidase L) Length = 275 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 258 TNSQGVEIFWKSWLPREGTP 317 T S G IF+K W PR+G P Sbjct: 4 TTSDGTNIFYKDWGPRDGLP 23
>PITM1_HUMAN (O00562) Membrane-associated phosphatidylinositol transfer protein| 1 (Phosphatidylinositol transfer protein, membrane-associated 1) (Pyk2 N-terminal domain-interacting receptor 2) (NIR-2) (Drosophila retinal degeneration B homolog) Length = 1243 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 87 PRLEGASEELRAAAAQSLDWAPARRRVSAAFAP 185 P EG+ L+AA A + W P RR S AF P Sbjct: 639 PEPEGSQNSLQAAPATTSSWEP--RRASTAFCP 669
>AREA_ASPNG (O13412) Nitrogen regulatory protein areA| Length = 882 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +3 Query: 27 PRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDWAPARRR 164 PRAG VRRA V AP S ++ S+ AP R+R Sbjct: 773 PRAGAVRRAEPLVPIAAAPPKANPTTSSPGQSRGTSSVQMAPKRQR 818
>IF2_PELLD (Q3B1Z8) Translation initiation factor IF-2| Length = 915 Score = 28.9 bits (63), Expect = 3.3 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +3 Query: 3 PPTRHAGAPRAGTVRRASVAVAAGKAPLPRL-EGASEELRAAAAQSLDWAPARRRVSAAF 179 PP R A P A V VAAG+AP P E + +A A + PA VS A Sbjct: 109 PPVRAAAQP-------APVPVAAGEAPSPLAPETPAPATESAPAVAPAGVPAAEPVSEAL 161 Query: 180 APVLP 194 + LP Sbjct: 162 SAPLP 166
>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)| Length = 518 Score = 28.5 bits (62), Expect = 4.4 Identities = 19/57 (33%), Positives = 23/57 (40%) Frame = +3 Query: 3 PPTRHAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDWAPARRRVSA 173 PP A P G A A A + P +GA+ AAAA + APA A Sbjct: 428 PPAEGAVPPADGAAPPAEGAAPAAEGAAPPADGAAPPAEAAAAPADAAAPAAEAAPA 484
>NPTXR_MOUSE (Q99J85) Neuronal pentraxin receptor| Length = 493 Score = 28.1 bits (61), Expect = 5.7 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +3 Query: 45 RRASVAVAAGKAP--LPRLEGASEELRAAAAQSLDWAPARRRVSAAFAPVLPTLDH 206 RR ++A A +P L LE A LR + PAR +S+A AP +PT H Sbjct: 170 RRDTMADGAWDSPALLLELEDAVRALRDRIERIEQELPARGNLSSAPAPAMPTALH 225
>GUXB_CELFI (P50899) Exoglucanase B precursor (EC 3.2.1.91)| (Exocellobiohydrolase B) (1,4-beta-cellobiohydrolase B) (CBP120) Length = 1090 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 226 PRESRWKRILRPTHRELKYSGRVGCL 303 P+ES W+ + +P+ E KY G+ G L Sbjct: 239 PQESVWETVPQPSCEEFKYGGKNGYL 264
>SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Forced expression| inhibition of growth A) Length = 1790 Score = 28.1 bits (61), Expect = 5.7 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Frame = +3 Query: 51 ASVAVAAGKAPL-PRLEGAS----EELRAAAAQSLDWAPARRR 164 A+ A AAG AP+ P GA E+LRAAA Q+ D RRR Sbjct: 1569 ANGAGAAGDAPVSPATSGAMDSLLEKLRAAAPQAKDQRDRRRR 1611
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/51 (35%), Positives = 22/51 (43%) Frame = +3 Query: 3 PPTRHAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDWAPA 155 PP A PR G +R+ A +G P P AAAAQ AP+ Sbjct: 68 PPPSPAPEPRGGKAKRSPSAAGSGGPPTP----------AAAAQPASPAPS 108
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/51 (35%), Positives = 22/51 (43%) Frame = +3 Query: 3 PPTRHAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDWAPA 155 PP A PR G +R+ A +G P P AAAAQ AP+ Sbjct: 68 PPPSPAPEPRGGKAKRSPSAAGSGGPPTP----------AAAAQPASPAPS 108
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 12/50 (24%) Frame = +3 Query: 72 GKAPLPR------LEGASEELR------AAAAQSLDWAPARRRVSAAFAP 185 G+APLP+ ++G ELR A A D P RRR SAA P Sbjct: 38 GRAPLPQERGFRVVQGDPRELRLWERGDARGASRADEKPLRRRRSAALQP 87
>PR73_MMTVG (P03320) Protein PR73| Length = 320 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 220 WRPRESRWKRILRPTHRELKYSGR 291 W+PR R I RPT L Y+GR Sbjct: 206 WQPRTYRGPYIYRPTDAPLPYTGR 229
>PKNJ_MYCTU (P65732) Probable serine/threonine-protein kinase pknJ (EC| 2.7.11.1) Length = 589 Score = 27.7 bits (60), Expect = 7.4 Identities = 23/76 (30%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Frame = +3 Query: 3 PPTRHAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDWA--------PAR 158 PPT P A +A A K P+ R A E AAAA A PA Sbjct: 235 PPTVSDRVPGLSAAMDAVIATAMAKDPMRRFTSAGEFAHAAAAALYGGATDGWVPPSPAP 294 Query: 159 RRVSAAFAPVLPTLDH 206 +S P P H Sbjct: 295 HVISQGAVPGSPWWQH 310
>PKNJ_MYCBO (P65733) Probable serine/threonine-protein kinase pknJ (EC| 2.7.11.1) Length = 589 Score = 27.7 bits (60), Expect = 7.4 Identities = 23/76 (30%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Frame = +3 Query: 3 PPTRHAGAPRAGTVRRASVAVAAGKAPLPRLEGASEELRAAAAQSLDWA--------PAR 158 PPT P A +A A K P+ R A E AAAA A PA Sbjct: 235 PPTVSDRVPGLSAAMDAVIATAMAKDPMRRFTSAGEFAHAAAAALYGGATDGWVPPSPAP 294 Query: 159 RRVSAAFAPVLPTLDH 206 +S P P H Sbjct: 295 HVISQGAVPGSPWWQH 310
>RFCL_SULAC (Q4JAB1) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 437 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 207 WLFKMAPKGIQMEENFETNSQGVEIFWKSWLPREGTPTKAAL 332 W K PK +Q EN + + ++ + +SWL G PT A+ Sbjct: 5 WFLKYRPKSLQEVENQDEVKEELKKWIESWL--NGEPTAKAV 44
>STK10_HUMAN (O94804) Serine/threonine-protein kinase 10 (EC 2.7.11.1)| (Lymphocyte-oriented kinase) Length = 968 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +3 Query: 198 LDHWLFKMAPKGIQMEENFETNSQGVEIFWK----SWLPREGTPTKAA 329 L W K+ P+ +EE+ + E+F+K + P TP+KAA Sbjct: 910 LKEWRDKLRPRKKALEEDLNQKKREQEMFFKLSEEAECPNPSTPSKAA 957 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,569,486 Number of Sequences: 219361 Number of extensions: 607935 Number of successful extensions: 2528 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2441 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2526 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
