ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06d07 |
|---|---|
| Clone Library Name | barley_pub |
>CALX_PEA (O82709) Calnexin homolog precursor| Length = 551 Score = 31.6 bits (70), Expect = 0.89 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR-ARSAPS---RWRA 240 +W AP P C A+P C +W R +S P+ +W A Sbjct: 304 EWEAPKIENPKCEAAPGCGEWKRPTKSNPAYKGKWSA 340
>CALX_SOYBN (Q39817) Calnexin homolog precursor| Length = 546 Score = 30.8 bits (68), Expect = 1.5 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP P C A+P C +W R Sbjct: 305 EWEAPKIENPKCEAAPGCGEWKR 327
>ZN198_HUMAN (Q9UBW7) Zinc finger protein 198 (Zinc finger MYM-type protein 2)| (Fused in myeloproliferative disorders protein) (Rearranged in atypical myeloproliferative disorder protein) Length = 1377 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Frame = +3 Query: 162 FDAELLGEPGMPAMDACALCAKPLARDSDVFMYRGDTP-FCSEECRXEQMHLDA 320 F + +P P CA C KPL + + +G FCS C H A Sbjct: 315 FQPSVQQQPTKPVKVTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKPA 368
>ADA2A_CAVPO (Q60474) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) Length = 450 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +2 Query: 293 PPGADAPRRPLRQAGRAEAAAVLGGDGVP 379 PPGA P R LR +A A+ V GD +P Sbjct: 305 PPGARRPERGLRAKSKARASQVKPGDSLP 333
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.0 bits (66), Expect = 2.6 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Frame = +1 Query: 148 PAPSSSMP----SCLASPACRQWTRARSAPSRWRATATSSCT 261 PAPS S+ SC++SP C+ A PS ++ TSSCT Sbjct: 39 PAPSLSLVCTPVSCVSSPCCQ----AACEPSACQSGCTSSCT 76
>CALX1_ARATH (P29402) Calnexin homolog 1 precursor| Length = 530 Score = 30.0 bits (66), Expect = 2.6 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +1 Query: 145 WPAPSSSMPSCLASPACRQWTR 210 W AP P C A+P C +W R Sbjct: 297 WEAPKIDNPKCEAAPGCGEWKR 318
>CALX_HELTU (Q39994) Calnexin homolog precursor| Length = 540 Score = 29.6 bits (65), Expect = 3.4 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP P C ++P C +W R Sbjct: 300 EWEAPQIENPKCESAPGCGEWRR 322
>GORS2_HUMAN (Q9H8Y8) Golgi reassembly stacking protein 2 (GRS2) (Golgi| reassembly stacking protein of 55 kDa) (GRASP55) (p59) (Golgi phosphoprotein 6) (GOLPH6) Length = 451 Score = 29.3 bits (64), Expect = 4.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 278 LQRGVPPGADAPRRPLRQAGRAEAAAVLGGDGVPPWAAA 394 L +PP ++AP P +A+AA+ L D PP A A Sbjct: 382 LLSSLPPTSNAPSDPATTTAKADAASSLTVDVTPPTAKA 420
>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor| Length = 532 Score = 29.3 bits (64), Expect = 4.4 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP S C A+P C +W R Sbjct: 298 EWEAPKVSNTKCEAAPGCGEWKR 320
>ZMYM5_HUMAN (Q9UJ78) Zinc finger MYM-type protein 5 (Zinc finger protein 237)| (Zinc finger protein 198-like 1) Length = 382 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Frame = +3 Query: 195 PAMDACALCAKPLARDSDVFMYRGDTP-FCSEECRXEQMH 311 PA CA C KPL + + +G FCS C H Sbjct: 239 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSH 278
>CALX_CANFA (P24643) Calnexin precursor (pp90)| Length = 593 Score = 28.5 bits (62), Expect = 7.6 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP + P C ++P C W R Sbjct: 350 EWEAPQIANPKCESAPGCGVWQR 372
>CALX_PONPY (Q5R440) Calnexin precursor| Length = 592 Score = 28.5 bits (62), Expect = 7.6 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP + P C ++P C W R Sbjct: 349 EWEAPQIANPKCESAPGCGVWQR 371
>CALX_RAT (P35565) Calnexin precursor| Length = 591 Score = 28.5 bits (62), Expect = 7.6 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP + P C ++P C W R Sbjct: 350 EWEAPQIANPKCESAPGCGVWQR 372
>CALX_MOUSE (P35564) Calnexin precursor| Length = 591 Score = 28.5 bits (62), Expect = 7.6 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP + P C ++P C W R Sbjct: 350 EWEAPQIANPKCESAPGCGVWQR 372
>NIFV1_ANASP (Q44290) Homocitrate synthase 1 (EC 2.3.3.14)| Length = 377 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/47 (42%), Positives = 22/47 (46%) Frame = +2 Query: 287 GVPPGADAPRRPLRQAGRAEAAAVLGGDGVPPWAAAVQEGARRELSG 427 GV G D PR L + + AAA G VPPW A V E SG Sbjct: 244 GVDMGIDTPR--LLELSQLVAAA--SGANVPPWKAIVGENTFAHESG 286
>TPBG_RAT (Q5PQV5) Trophoblast glycoprotein precursor (5T4 oncofetal| trophoblast glycoprotein) (5T4 oncotrophoblast glycoprotein) Length = 426 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 151 APSSSMPSCLASPACRQWTRARSAPSRWRATATSSCTE 264 APSSS+PS SPA + + P R A C+E Sbjct: 33 APSSSLPSSSTSPAAFLASGSAQPPPAERCPAACECSE 70
>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein| dumpy-15) Length = 296 Score = 28.5 bits (62), Expect = 7.6 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 296 PGADAPRRPLRQAGRAEAAAVLGGDGVPPWAAAVQEGARREL--SGRPG 436 PG+ PR P AG A A G G P + + GA E SG PG Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPG 225
>RS2_XYLFT (P66547) 30S ribosomal protein S2| Length = 266 Score = 28.5 bits (62), Expect = 7.6 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 296 PGADAPRRPLRQAGRAEAAAVLGGDGVPPWAAAV--QEGARRELSGRPGR 439 PG D R ++ RA A AVL G P AAAV +E A +G+ GR Sbjct: 201 PGNDDAIRAVQLYARAAADAVLEGKAAMPNAAAVREEEFASAPDAGKKGR 250
>RS2_XYLFA (P66546) 30S ribosomal protein S2| Length = 266 Score = 28.5 bits (62), Expect = 7.6 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 296 PGADAPRRPLRQAGRAEAAAVLGGDGVPPWAAAV--QEGARRELSGRPGR 439 PG D R ++ RA A AVL G P AAAV +E A +G+ GR Sbjct: 201 PGNDDAIRAVQLYARAAADAVLEGKAAMPNAAAVREEEFASAPDAGKKGR 250
>CALX_HUMAN (P27824) Calnexin precursor (Major histocompatibility complex class| I antigen-binding protein p88) (p90) (IP90) Length = 592 Score = 28.1 bits (61), Expect = 9.9 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 142 QWPAPSSSMPSCLASPACRQWTR 210 +W AP + P C ++P C W R Sbjct: 349 EWEAPQIANPRCESAPGCGVWQR 371
>TILS_DEIRA (Q9RV23) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 582 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +2 Query: 284 RGVPPGADAPRRPLRQAGRAEAAAVLGGDG 373 RG+PP RRP GRAE L G G Sbjct: 162 RGIPPQRGRVRRPWLNVGRAEIETYLRGLG 191
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +2 Query: 293 PPGADAPRRPLRQAGRAEAAAVLGGDGVPPWAAAVQ-EGAR---RELSGRPGR 439 P GAD PRR R + +A A + G A A++ EG RE GRP R Sbjct: 843 PEGADPPRRHHRHRDKDKAPATVPSAGEQDRAEALRAEGGELGPREERGRPRR 895
>BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated protein| Length = 653 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 157 SSSMPSCLASPACRQWTRARSAPSRW 234 S+ +PSCL Q RARS+PS W Sbjct: 27 SAWVPSCLGQSRNLQGRRARSSPSLW 52
>TPBG_MOUSE (Q9Z0L0) Trophoblast glycoprotein precursor (5T4 oncofetal| trophoblast glycoprotein) (5T4 oncotrophoblast glycoprotein) Length = 426 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 151 APSSSMPSCLASPACRQWTRARSAPSRWRATATSSCTE 264 APSSS+PS SPA + + P R A C+E Sbjct: 33 APSSSVPSSSTSPAAFLASGSAQPPPAERCPAACECSE 70
>ADA2A_HUMAN (P08913) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) (Alpha-2 adrenergic receptor subtype C10) Length = 450 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 293 PPGADAPRRPLRQAGRAEAAAVLGGDGVP 379 PPG P R R G+A A+ V GD +P Sbjct: 305 PPGPRRPERGPRGKGKARASQVKPGDSLP 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,856,484 Number of Sequences: 219361 Number of extensions: 797156 Number of successful extensions: 3102 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2954 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3098 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
