ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GDBX_WHEAT (P21292) Gamma-gliadin precursor 31 2.3

>GDBX_WHEAT (P21292) Gamma-gliadin precursor|
          Length = 302

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 3   PHFSTHHLPSPVFPSPLKTYRRRP 74
           PH + HH P   FP P +TY  +P
Sbjct: 55  PHQTFHHQPQQTFPQPQQTYPHQP 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,749,536
Number of Sequences: 219361
Number of extensions: 222267
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top