ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2dbj|AK067767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
4emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa... 56 1e-04
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
6dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
7dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
8emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.025
9gb|AY107689.1| Zea mays PCO122240 mRNA sequence 46 0.100
10gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.39
11gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 44 0.39
12gb|AF545726.1| Menacanthus sp. KPJ-2002 cytochrome oxidase subun... 44 0.39
13gb|AE008709.1| Salmonella typhimurium LT2, section 17 of 220 of ... 44 0.39
14emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.39
15gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.39
16gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 44 0.39
17gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 44 0.39
18ref|NM_197738.1| Oryza sativa (japonica cultivar-group) unknown ... 42 1.6
19ref|XM_391464.1| Gibberella zeae PH-1 chromosome linkage group 1... 42 1.6
20gb|AC110682.6| Rattus norvegicus 18 BAC CH230-197I20 (Children's... 42 1.6
21emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 42 1.6
22gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen... 42 1.6
23dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
25gb|AF177379.1| Cynodon dactylon acidic Cyn d 1 isoallergen isofo... 42 1.6
26dbj|AK109732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
27gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
28dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.6
29dbj|AP005131.2| Homo sapiens genomic DNA, chromosome 18, clone:R... 42 1.6
30gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.1
31gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 6.1
32gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 6.1
33ref|XM_842954.1| Leishmania major strain Friedlin isovaleryl-coA... 40 6.1
34ref|XM_386201.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 6.1
35gb|AY029400.1| Campoletis sonorensis ichnovirus segment Z, compl... 40 6.1
36emb|BX323573.7| Zebrafish DNA sequence from clone DKEYP-98F5, co... 40 6.1
37gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 6.1
38gb|AC109219.13| Mus musculus chromosome 1, clone RP23-429I18, co... 40 6.1
39gb|AC110232.15| Mus musculus chromosome 1, clone RP23-67H24, com... 40 6.1 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 43       atggcggtcggcatcgcgctcctgctcgacct 74
                |||||||||||||||||||| |||||||||||
Sbjct: 18984544 atggcggtcggcatcgcgctgctgctcgacct 18984513



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 47      cggtcggcatcgcgctcctgctcgacct 74
               |||||||||||||||| |||||||||||
Sbjct: 4301488 cggtcggcatcgcgctactgctcgacct 4301515
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>dbj|AK067767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119P15, full
           insert sequence
          Length = 1352

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 43  atggcggtcggcatcgcgctcctgctcgacct 74
           |||||||||||||||||||| |||||||||||
Sbjct: 138 atggcggtcggcatcgcgctgctgctcgacct 169
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 43       atggcggtcggcatcgcgctcctgctcgacct 74
                |||||||||||||||||||| |||||||||||
Sbjct: 18910771 atggcggtcggcatcgcgctgctgctcgacct 18910740



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 47      cggtcggcatcgcgctcctgctcgacct 74
               |||||||||||||||| |||||||||||
Sbjct: 4301475 cggtcggcatcgcgctactgctcgacct 4301502
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>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151203

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 43    atggcggtcggcatcgcgctcctgctcgacct 74
             |||||||||||||||||||| |||||||||||
Sbjct: 80661 atggcggtcggcatcgcgctgctgctcgacct 80630
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 44       tggcggtcggcatcgcgctcctgctcgacct 74
                ||||||||||||||||||| |||||||||||
Sbjct: 11188898 tggcggtcggcatcgcgctgctgctcgacct 11188868
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>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0042H24
          Length = 186313

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 44    tggcggtcggcatcgcgctcctgctcgacct 74
             ||||||||||||||||||| |||||||||||
Sbjct: 24070 tggcggtcggcatcgcgctgctgctcgacct 24040
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>dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0004P20
          Length = 160410

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                             
Query: 44     tggcggtcggcatcgcgctcctgctcgacct 74
              ||||||||||||||||||| |||||||||||
Sbjct: 147705 tggcggtcggcatcgcgctgctgctcgacct 147675
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>emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC OSJNBa0056M17 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178147

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 47     cggtcggcatcgcgctcctgctcgacct 74
              |||||||||||||||| |||||||||||
Sbjct: 150223 cggtcggcatcgcgctactgctcgacct 150196
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>gb|AY107689.1| Zea mays PCO122240 mRNA sequence
          Length = 630

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 181 ctctccgcgcggcccttctccggttttgcaggattcactgttgctcattgtgatgctgg 239
           ||||||||||| | | ||| |||||||   || || |||||||||||||||||||||||
Sbjct: 215 ctctccgcgcgccacctcttcggttttcatgggtttactgttgctcattgtgatgctgg 273
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 49      gtcggcatcgcgctcctgctcg 70
               ||||||||||||||||||||||
Sbjct: 3118127 gtcggcatcgcgctcctgctcg 3118148
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 62     tcctgctcgacctggcggcccg 83
              ||||||||||||||||||||||
Sbjct: 608482 tcctgctcgacctggcggcccg 608461
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>gb|AF545726.1| Menacanthus sp. KPJ-2002 cytochrome oxidase subunit I gene, partial
           cds; mitochondrial gene for mitochondrial product
          Length = 379

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 410 ttttattatactatttaccact 431
           ||||||||||||||||||||||
Sbjct: 307 ttttattatactatttaccact 328
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>gb|AE008709.1| Salmonella typhimurium LT2, section 17 of 220 of the complete genome
          Length = 22035

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 41    ccatggcggtcggcatcgcgct 62
             ||||||||||||||||||||||
Sbjct: 11246 ccatggcggtcggcatcgcgct 11225
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 49      gtcggcatcgcgctcctgctcg 70
               ||||||||||||||||||||||
Sbjct: 1296917 gtcggcatcgcgctcctgctcg 1296938
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 49      gtcggcatcgcgctcctgctcg 70
               ||||||||||||||||||||||
Sbjct: 1338492 gtcggcatcgcgctcctgctcg 1338471
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 41      ccatggcggtcggcatcgcgct 62
               ||||||||||||||||||||||
Sbjct: 2538491 ccatggcggtcggcatcgcgct 2538512
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
              complete genome
          Length = 4755700

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 41     ccatggcggtcggcatcgcgct 62
              ||||||||||||||||||||||
Sbjct: 361938 ccatggcggtcggcatcgcgct 361917
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>ref|NM_197738.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0042H09.9), mRNA
          Length = 1150

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 35  ccgcgcccatggcggtcggca 55
           |||||||||||||||||||||
Sbjct: 332 ccgcgcccatggcggtcggca 352
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>ref|XM_391464.1| Gibberella zeae PH-1 chromosome linkage group 14 hypothetical protein
            (FG11288.1) partial mRNA
          Length = 2484

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 255  gaatgatagccctgatcttgt 275
            |||||||||||||||||||||
Sbjct: 2298 gaatgatagccctgatcttgt 2318
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>gb|AC110682.6| Rattus norvegicus 18 BAC CH230-197I20 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 166696

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    tgatgctggttcaacttatgg 251
              |||||||||||||||||||||
Sbjct: 147523 tgatgctggttcaacttatgg 147543
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 69    cgacctggcggcccgcgcgccccac 93
             |||||||| ||||||||||||||||
Sbjct: 11041 cgacctggtggcccgcgcgccccac 11065
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>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete
             sequence
          Length = 144191

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    ccgcgcccatggcggtcggca 55
             |||||||||||||||||||||
Sbjct: 57755 ccgcgcccatggcggtcggca 57775
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 35       ccgcgcccatggcggtcggca 55
                |||||||||||||||||||||
Sbjct: 21552302 ccgcgcccatggcggtcggca 21552282
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     tcgcgctcctgctcgacctgg 76
              |||||||||||||||||||||
Sbjct: 672886 tcgcgctcctgctcgacctgg 672906
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>gb|AF177379.1| Cynodon dactylon acidic Cyn d 1 isoallergen isoform 3 precursor,
           mRNA, complete cds
          Length = 789

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 270 tcttgtcagtgatcttaatga 290
           |||||||||||||||||||||
Sbjct: 343 tcttgtcagtgatcttaatga 323
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>dbj|AK109732.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C03, full
           insert sequence
          Length = 1258

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 35  ccgcgcccatggcggtcggca 55
           |||||||||||||||||||||
Sbjct: 570 ccgcgcccatggcggtcggca 590
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 35       ccgcgcccatggcggtcggca 55
                |||||||||||||||||||||
Sbjct: 21563965 ccgcgcccatggcggtcggca 21563945
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>dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-701H16, complete
             sequence
          Length = 173709

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    cccactcctccgcctccctcc 109
             |||||||||||||||||||||
Sbjct: 37734 cccactcctccgcctccctcc 37714
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>dbj|AP005131.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-53B2, complete
              sequence
          Length = 162119

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     cccactcctccgcctccctcc 109
              |||||||||||||||||||||
Sbjct: 128782 cccactcctccgcctccctcc 128762
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 35      ccgcgcccatggcggtcggc 54
               ||||||||||||||||||||
Sbjct: 1928769 ccgcgcccatggcggtcggc 1928788



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ccgcgcccatggcggtcggc 54
              ||||||||||||||||||||
Sbjct: 970257 ccgcgcccatggcggtcggc 970238
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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     ccatggcggtcggcatcgcg 60
              ||||||||||||||||||||
Sbjct: 388535 ccatggcggtcggcatcgcg 388516
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     gacctggcggcccgcgcgcc 89
              ||||||||||||||||||||
Sbjct: 786973 gacctggcggcccgcgcgcc 786954
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>ref|XM_842954.1| Leishmania major strain Friedlin isovaleryl-coA dehydrogenase
           (LMJ_0350) partial mRNA
          Length = 1233

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  ccatggcggtcggcatcgcg 60
           ||||||||||||||||||||
Sbjct: 827 ccatggcggtcggcatcgcg 846
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>ref|XM_386201.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06025.1)
           partial mRNA
          Length = 1977

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 53  gcatcgcgctcctgctcgac 72
           ||||||||||||||||||||
Sbjct: 653 gcatcgcgctcctgctcgac 634
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>gb|AY029400.1| Campoletis sonorensis ichnovirus segment Z, complete sequence
          Length = 19557

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   gtgatgctggttcaacttat 249
             ||||||||||||||||||||
Sbjct: 13155 gtgatgctggttcaacttat 13136
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>emb|BX323573.7| Zebrafish DNA sequence from clone DKEYP-98F5, complete sequence
          Length = 181694

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     ctcctccgcctccctccact 112
              ||||||||||||||||||||
Sbjct: 167534 ctcctccgcctccctccact 167515
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 50     tcggcatcgcgctcctgctcgacc 73
              |||||||||||| |||||||||||
Sbjct: 223162 tcggcatcgcgcacctgctcgacc 223185
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>gb|AC109219.13| Mus musculus chromosome 1, clone RP23-429I18, complete sequence
          Length = 204942

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    ttttgtatgcatttggcttt 378
              ||||||||||||||||||||
Sbjct: 100975 ttttgtatgcatttggcttt 100994
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>gb|AC110232.15| Mus musculus chromosome 1, clone RP23-67H24, complete sequence
          Length = 209668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    ttttgtatgcatttggcttt 378
              ||||||||||||||||||||
Sbjct: 186198 ttttgtatgcatttggcttt 186179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,841,513
Number of Sequences: 3902068
Number of extensions: 2841513
Number of successful extensions: 52265
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51595
Number of HSP's gapped (non-prelim): 670
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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