Clone Name | bart06d02 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_188276.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1923 Score = 176 bits (89), Expect = 5e-41 Identities = 224/269 (83%) Strand = Plus / Plus Query: 248 gaggggcagagcgacccgcctgtgcatggcgtggccgatagggtcgtcggggtgctgggg 307 |||||||| ||||||| ||||||||||||||| || | | ||||||||| ||||||||| Sbjct: 175 gaggggcatagcgaccagcctgtgcatggcgtcaccaacacggtcgtcggcgtgctgggg 234 Query: 308 ggcggccagttggggaagatgctctgccaggcggcgagtcagatggggatcaaagtggcc 367 || |||||| ||||||||||||| ||||||||||| || ||||||||| ||| ||||| Sbjct: 235 ggaggccagctggggaagatgctgtgccaggcggccagccagatgggggtcaggatggcc 294 Query: 368 atcctggaccccctcaaggactgccccgcgaactccgtctgtcacgagcatgtcgtgggg 427 || || || |||||| |||||||||| |||| ||| || || |||||||||||||| ||| Sbjct: 295 atacttgatcccctcgaggactgcccggcgagctcggtttgccacgagcatgtcgtcggg 354 Query: 428 agcttcagtgatggtgacgcggtccgtgagtttgcgaagaggtgtgatgttctaactgtg 487 ||||||| |||||| | | |||| | ||||| || |||||||| | ||| | || ||| Sbjct: 355 agcttcaatgatggcgccacggttagcgagttcgcaaagaggtgcggggttttgacggtg 414 Query: 488 gaaattgagcatgtggatgctgtgacact 516 |||||||||||||| || ||||| ||||| Sbjct: 415 gaaattgagcatgtcgacgctgtaacact 443
>dbj|AK068172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129D15, full insert sequence Length = 2276 Score = 176 bits (89), Expect = 5e-41 Identities = 224/269 (83%) Strand = Plus / Plus Query: 248 gaggggcagagcgacccgcctgtgcatggcgtggccgatagggtcgtcggggtgctgggg 307 |||||||| ||||||| ||||||||||||||| || | | ||||||||| ||||||||| Sbjct: 305 gaggggcatagcgaccagcctgtgcatggcgtcaccaacacggtcgtcggcgtgctgggg 364 Query: 308 ggcggccagttggggaagatgctctgccaggcggcgagtcagatggggatcaaagtggcc 367 || |||||| ||||||||||||| ||||||||||| || ||||||||| ||| ||||| Sbjct: 365 ggaggccagctggggaagatgctgtgccaggcggccagccagatgggggtcaggatggcc 424 Query: 368 atcctggaccccctcaaggactgccccgcgaactccgtctgtcacgagcatgtcgtgggg 427 || || || |||||| |||||||||| |||| ||| || || |||||||||||||| ||| Sbjct: 425 atacttgatcccctcgaggactgcccggcgagctcggtttgccacgagcatgtcgtcggg 484 Query: 428 agcttcagtgatggtgacgcggtccgtgagtttgcgaagaggtgtgatgttctaactgtg 487 ||||||| |||||| | | |||| | ||||| || |||||||| | ||| | || ||| Sbjct: 485 agcttcaatgatggcgccacggttagcgagttcgcaaagaggtgcggggttttgacggtg 544 Query: 488 gaaattgagcatgtggatgctgtgacact 516 |||||||||||||| || ||||| ||||| Sbjct: 545 gaaattgagcatgtcgacgctgtaacact 573
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 155 bits (78), Expect = 2e-34 Identities = 162/190 (85%) Strand = Plus / Plus Query: 252 ggcagagcgacccgcctgtgcatggcgtggccgatagggtcgtcggggtgctggggggcg 311 |||| ||||||| ||||||||||||||| || | | ||||||||| ||||||||||| | Sbjct: 5405477 ggcatagcgaccagcctgtgcatggcgtcaccaacacggtcgtcggcgtgctggggggag 5405536 Query: 312 gccagttggggaagatgctctgccaggcggcgagtcagatggggatcaaagtggccatcc 371 ||||| ||||||||||||| ||||||||||| || ||||||||| ||| ||||||| | Sbjct: 5405537 gccagctggggaagatgctgtgccaggcggccagccagatgggggtcaggatggccatac 5405596 Query: 372 tggaccccctcaaggactgccccgcgaactccgtctgtcacgagcatgtcgtggggagct 431 | || |||||| |||||||||| |||| ||| || || |||||||||||||| ||||||| Sbjct: 5405597 ttgatcccctcgaggactgcccggcgagctcggtttgccacgagcatgtcgtcgggagct 5405656 Query: 432 tcagtgatgg 441 ||| |||||| Sbjct: 5405657 tcaatgatgg 5405666 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ggaagccgcggccgccaagccgga 182 |||||||||||||||||| ||||| Sbjct: 30660198 ggaagccgcggccgccaacccgga 30660221 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 15134841 gccgcggccgccaagccgga 15134822 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 485 gtggaaattgagcatgtggatgctgtgacact 516 ||||||||||||||||| || ||||| ||||| Sbjct: 5405824 gtggaaattgagcatgtcgacgctgtaacact 5405855
>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1046G12 Length = 163533 Score = 155 bits (78), Expect = 2e-34 Identities = 162/190 (85%) Strand = Plus / Plus Query: 252 ggcagagcgacccgcctgtgcatggcgtggccgatagggtcgtcggggtgctggggggcg 311 |||| ||||||| ||||||||||||||| || | | ||||||||| ||||||||||| | Sbjct: 156821 ggcatagcgaccagcctgtgcatggcgtcaccaacacggtcgtcggcgtgctggggggag 156880 Query: 312 gccagttggggaagatgctctgccaggcggcgagtcagatggggatcaaagtggccatcc 371 ||||| ||||||||||||| ||||||||||| || ||||||||| ||| ||||||| | Sbjct: 156881 gccagctggggaagatgctgtgccaggcggccagccagatgggggtcaggatggccatac 156940 Query: 372 tggaccccctcaaggactgccccgcgaactccgtctgtcacgagcatgtcgtggggagct 431 | || |||||| |||||||||| |||| ||| || || |||||||||||||| ||||||| Sbjct: 156941 ttgatcccctcgaggactgcccggcgagctcggtttgccacgagcatgtcgtcgggagct 157000 Query: 432 tcagtgatgg 441 ||| |||||| Sbjct: 157001 tcaatgatgg 157010 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 485 gtggaaattgagcatgtggatgctgtgacact 516 ||||||||||||||||| || ||||| ||||| Sbjct: 157168 gtggaaattgagcatgtcgacgctgtaacact 157199
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 155 bits (78), Expect = 2e-34 Identities = 162/190 (85%) Strand = Plus / Plus Query: 252 ggcagagcgacccgcctgtgcatggcgtggccgatagggtcgtcggggtgctggggggcg 311 |||| ||||||| ||||||||||||||| || | | ||||||||| ||||||||||| | Sbjct: 2317 ggcatagcgaccagcctgtgcatggcgtcaccaacacggtcgtcggcgtgctggggggag 2376 Query: 312 gccagttggggaagatgctctgccaggcggcgagtcagatggggatcaaagtggccatcc 371 ||||| ||||||||||||| ||||||||||| || ||||||||| ||| ||||||| | Sbjct: 2377 gccagctggggaagatgctgtgccaggcggccagccagatgggggtcaggatggccatac 2436 Query: 372 tggaccccctcaaggactgccccgcgaactccgtctgtcacgagcatgtcgtggggagct 431 | || |||||| |||||||||| |||| ||| || || |||||||||||||| ||||||| Sbjct: 2437 ttgatcccctcgaggactgcccggcgagctcggtttgccacgagcatgtcgtcgggagct 2496 Query: 432 tcagtgatgg 441 ||| |||||| Sbjct: 2497 tcaatgatgg 2506 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 485 gtggaaattgagcatgtggatgctgtgacact 516 ||||||||||||||||| || ||||| ||||| Sbjct: 2664 gtggaaattgagcatgtcgacgctgtaacact 2695
>ref|XM_476736.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3102 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcctc 203 ||||||||||||||||||||| Sbjct: 39 cctccgcctcgccgccgcctc 59
>gb|AC102611.10| Mus musculus chromosome 1, clone RP23-416O18, complete sequence Length = 210808 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 ggatcaaagtggccatcctgg 374 ||||||||||||||||||||| Sbjct: 83144 ggatcaaagtggccatcctgg 83124
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 gccggacctccgcctcgccgc 197 ||||||||||||||||||||| Sbjct: 46281 gccggacctccgcctcgccgc 46261
>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21, complete sequence Length = 143093 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcctc 203 ||||||||||||||||||||| Sbjct: 107796 cctccgcctcgccgccgcctc 107816
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 aagccggacctccgcctcgccgccg 199 |||||||||||||||||||| |||| Sbjct: 403407 aagccggacctccgcctcgcggccg 403383
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcctc 203 ||||||||||||||||||||| Sbjct: 18891886 cctccgcctcgccgccgcctc 18891906 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ccgcctcgccgccgcctctctcgc 209 |||||||||||||||||| ||||| Sbjct: 35032468 ccgcctcgccgccgcctccctcgc 35032491 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ctccgcctcgccgccgcctc 203 |||||||||||||||||||| Sbjct: 25412325 ctccgcctcgccgccgcctc 25412306
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcctc 203 ||||||||||||||||||||| Sbjct: 3688868 cctccgcctcgccgccgcctc 3688848 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 9576276 cctccgcctcgccgccgcct 9576295
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 gccggacctccgcctcgccgc 197 ||||||||||||||||||||| Sbjct: 2064405 gccggacctccgcctcgccgc 2064385
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcctc 203 ||||||||||||||||||||| Sbjct: 33219 cctccgcctcgccgccgcctc 33199
>dbj|AK065622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031K22, full insert sequence Length = 3102 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcctc 203 ||||||||||||||||||||| Sbjct: 39 cctccgcctcgccgccgcctc 59
>ref|XM_474418.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ccgcctcgccgccgcctctctcgc 209 |||||||||||||||||| ||||| Sbjct: 141 ccgcctcgccgccgcctccctcgc 164
>ref|XM_467134.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 320 cctccgcctcgccgccgcct 339
>ref|NM_193825.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 2074 gccgcggccgccaagccgga 2093
>ref|NM_191562.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1416 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ggaagccgcggccgccaagccgga 182 |||||||||||||||||| ||||| Sbjct: 174 ggaagccgcggccgccaacccgga 197
>ref|XM_477343.1| Oryza sativa (japonica cultivar-group), mRNA Length = 486 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 359 cctccgcctcgccgccgcct 378
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ccgcctcgccgccgcctctctcgc 209 |||||||||| ||||||||||||| Sbjct: 344679 ccgcctcgcctccgcctctctcgc 344656
>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062D09, complete sequence Length = 160244 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 82150 cctccgcctcgccgccgcct 82169
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 aggactgccccgcgaactcc 403 |||||||||||||||||||| Sbjct: 5661904 aggactgccccgcgaactcc 5661885
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 15521247 cctccgcctcgccgccgcct 15521228 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 5396811 cctccgcctcgccgccgcct 5396792
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence Length = 115079 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 20798 cctccgcctcgccgccgcct 20779
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 102979 cctccgcctcgccgccgcct 102960
>emb|AL096701.14|HSA247I13 Human DNA sequence from clone RP11-247I13 on chromosome 22 Contains the 5' end of the DRG1 gene for developmentally regulated GTP binding protein 1, the EIF4ENIF1 gene foreukaryotic translation initiation factor 4E nuclear import factor 1, the 5' end of the gene for homolog of yeast Sfi1 (SFI1), a H2A histone family member Z (H2AFZ) pseudogene, a ribosomal protein S26 (RPS260) pseudogene, two novel genes and two CpG islands, complete sequence Length = 168110 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctagccaccgcctccgggag 72 |||||||||||||||||||| Sbjct: 89195 ctagccaccgcctccgggag 89176
>emb|X82447.4|OCA82447 Oligotropha carboxidovorans plasmid pHCG3 Length = 133058 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 79685 gccgcggccgccaagccgga 79704
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ctccgcctcgccgccgcctc 203 |||||||||||||||||||| Sbjct: 138883 ctccgcctcgccgccgcctc 138864
>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete sequence Length = 137366 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 75285 cctccgcctcgccgccgcct 75266
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 150893 gccgcggccgccaagccgga 150874
>gb|AC161624.4| Pan troglodytes BAC clone CH251-149E7 from chromosome unknown, complete sequence Length = 180132 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctagccaccgcctccgggag 72 |||||||||||||||||||| Sbjct: 8277 ctagccaccgcctccgggag 8258
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 88503 gccgcggccgccaagccgga 88484
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 4004285 cctccgcctcgccgccgcct 4004266 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 675993 cctccgcctcgccgccgcct 675974
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 8517421 cctccgcctcgccgccgcct 8517402
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 19702227 cctccgcctcgccgccgcct 19702246
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 16261294 cctccgcctcgccgccgcct 16261313
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 20354632 cctccgcctcgccgccgcct 20354651 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acctccgcctcgccgccgcc 201 |||||||||||||||||||| Sbjct: 8025187 acctccgcctcgccgccgcc 8025206 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 1008792 cctccgcctcgccgccgcct 1008811
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 15515781 cctccgcctcgccgccgcct 15515762 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 5396026 cctccgcctcgccgccgcct 5396007
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 26601748 cctccgcctcgccgccgcct 26601767
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 126589 cctccgcctcgccgccgcct 126570
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ggaagccgcggccgccaagccgga 182 |||||||||||||||||| ||||| Sbjct: 102475 ggaagccgcggccgccaacccgga 102498
>gb|AC159025.3| Pan troglodytes BAC clone CH251-489N6 from chromosome unknown, complete sequence Length = 181817 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ctagccaccgcctccgggag 72 |||||||||||||||||||| Sbjct: 165309 ctagccaccgcctccgggag 165290
>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J13 Length = 152837 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 71665 cctccgcctcgccgccgcct 71684
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 106807 gccgcggccgccaagccgga 106788
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 78027 cctccgcctcgccgccgcct 78046
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acctccgcctcgccgccgcc 201 |||||||||||||||||||| Sbjct: 132705 acctccgcctcgccgccgcc 132724
>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592E11 Length = 153734 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acctccgcctcgccgccgcc 201 |||||||||||||||||||| Sbjct: 48956 acctccgcctcgccgccgcc 48975
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 144129 cctccgcctcgccgccgcct 144148
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_F09 Length = 139371 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 35909 cctccgcctcgccgccgcct 35928
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 77810 cctccgcctcgccgccgcct 77829
>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1059D01 Length = 158792 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 84006 cctccgcctcgccgccgcct 84025
>emb|AJ427974.1|OSA427974 Oryza sativa HAK3 gene for putative potasium transporter, exons 1-6 Length = 3777 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 2934 gccgcggccgccaagccgga 2953
>dbj|AK106947.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D12, full insert sequence Length = 1658 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ggaagccgcggccgccaagccgga 182 |||||||||||||||||| ||||| Sbjct: 299 ggaagccgcggccgccaacccgga 322
>dbj|AK104598.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F08, full insert sequence Length = 1063 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acctccgcctcgccgccgcc 201 |||||||||||||||||||| Sbjct: 306 acctccgcctcgccgccgcc 287
>dbj|AK102638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099P04, full insert sequence Length = 1884 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 118 cctccgcctcgccgccgcct 137
>dbj|AK100340.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081N10, full insert sequence Length = 2159 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gccgcggccgccaagccgga 182 |||||||||||||||||||| Sbjct: 1599 gccgcggccgccaagccgga 1618
>dbj|AK073727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057G06, full insert sequence Length = 1064 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acctccgcctcgccgccgcc 201 |||||||||||||||||||| Sbjct: 307 acctccgcctcgccgccgcc 288
>dbj|AK071942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082G08, full insert sequence Length = 1514 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 109 cctccgcctcgccgccgcct 128
>dbj|AK060792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E03, full insert sequence Length = 2067 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acctccgcctcgccgccgcc 201 |||||||||||||||||||| Sbjct: 1356 acctccgcctcgccgccgcc 1337
>gb|AC153877.5| Mus musculus 6 BAC RP23-258E21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 232977 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 taactgtggaaattgagcat 499 |||||||||||||||||||| Sbjct: 62014 taactgtggaaattgagcat 61995
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete sequence Length = 94152 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ccgcctcgccgccgcctctctcgc 209 |||||||||||||||||| ||||| Sbjct: 64178 ccgcctcgccgccgcctccctcgc 64201
>emb|X86780.1|SHGCPIR S.hygroscopicus gene cluster for polyketide immunosuppressant rapamycin Length = 107379 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctctgccaggcggcgagtca 348 |||||||||||||||||||| Sbjct: 69582 ctctgccaggcggcgagtca 69601
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gatgctctgccaggcggcga 344 |||||||||||||||||||| Sbjct: 3321482 gatgctctgccaggcggcga 3321501
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 19713503 cctccgcctcgccgccgcct 19713522
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 8588184 cctccgcctcgccgccgcct 8588165
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 4004272 cctccgcctcgccgccgcct 4004253 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 675993 cctccgcctcgccgccgcct 675974
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ccgcctcgccgccgcctctctcgc 209 |||||||||||||||||| ||||| Sbjct: 91518 ccgcctcgccgccgcctccctcgc 91541
>emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136_E08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 118211 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 103141 cctccgcctcgccgccgcct 103160
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 40706 cctccgcctcgccgccgcct 40687
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cctccgcctcgccgccgcct 202 |||||||||||||||||||| Sbjct: 273799 cctccgcctcgccgccgcct 273780
>emb|AL122126.4|CNS01DT1 Human chromosome 14 DNA sequence BAC R-30H9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 150076 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 caccctcctctaaaccccta 44 |||||||||||||||||||| Sbjct: 46007 caccctcctctaaaccccta 46026
>gb|M61705.1|MUSIAP Mouse intestinal alkaline phosphatase (IAP) gene, complete cds Length = 5293 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gatcaaagtggccatcctgg 374 |||||||||||||||||||| Sbjct: 379 gatcaaagtggccatcctgg 360 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,058,998 Number of Sequences: 3902068 Number of extensions: 3058998 Number of successful extensions: 59051 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57356 Number of HSP's gapped (non-prelim): 1693 length of query: 516 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 493 effective length of database: 17,143,297,704 effective search space: 8451645768072 effective search space used: 8451645768072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)