ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF3_NEIMB (P65138) Translation initiation factor IF-3 30 4.3
2IF3_NEIMA (P65137) Translation initiation factor IF-3 30 4.3
3CP2K1_ONCMY (Q92090) Cytochrome P450 2K1 (EC 1.14.14.1) (CYPIIK1... 29 9.6

>IF3_NEIMB (P65138) Translation initiation factor IF-3|
          Length = 173

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 318 LSPSMNQEVCXR*QHGHYRIQQAREEEVASEN*KQ 214
           +SP+    VC    +G Y+ QQA++ + A +N KQ
Sbjct: 51  ISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQKQ 85



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>IF3_NEIMA (P65137) Translation initiation factor IF-3|
          Length = 173

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 318 LSPSMNQEVCXR*QHGHYRIQQAREEEVASEN*KQ 214
           +SP+    VC    +G Y+ QQA++ + A +N KQ
Sbjct: 51  ISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQKQ 85



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>CP2K1_ONCMY (Q92090) Cytochrome P450 2K1 (EC 1.14.14.1) (CYPIIK1) (P450 LMC2)|
          Length = 504

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 370 KENLKEGKKLQLELVLSLKRXTGHHLCPSLIMTFXMRYQS 489
           K+N+ + K   +ELV  LK     H+C   + +F +R Q+
Sbjct: 245 KKNIADMKMEVIELVRGLKETLNPHMCRGFVDSFLVRKQT 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,091,246
Number of Sequences: 219361
Number of extensions: 723115
Number of successful extensions: 2225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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