ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06c12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ628169.1| Hordeum vulgare bci3 gene for putative acid phosphatase Length = 2748 Score = 260 bits (131), Expect = 2e-66 Identities = 197/219 (89%) Strand = Plus / Plus Query: 32 gtggcgccgctgatccacgcgctgcggccgctgctgggctccggcaagcacgccggagtg 91 ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct: 1916 gtggcaccgctcatccacgcgctgcggccgctcctgggctccggcaagcaagccggcgtg 1975 Query: 92 gcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactggaagacggtg 151 |||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 1976 gcgtgcgatagctggcggctgggcgtggaggcgtacaacgtgcgggactggaagacggtg 2035 Query: 152 cccgcgagctgcgagggctacgtcggccactacatgctcggcagccatttccgccgcgac 211 || || | ||||||||||||||| || |||||||||||||||| ||| ||||| |||||| Sbjct: 2036 ccggccaactgcgagggctacgtggggcactacatgctcggcaaccacttccggcgcgac 2095 Query: 212 tcccaggtcgtcatcgaccaggccctcgcctatgtcgac 250 | | |||||||||||||||||||| ||||||| |||||| Sbjct: 2096 tgcaaggtcgtcatcgaccaggccatcgcctacgtcgac 2134
>emb|AJ250282.2|HVU250282 Hordeum vulgare partial mRNA for putative acid phosphatase (bci-3 gene) Length = 1152 Score = 260 bits (131), Expect = 2e-66 Identities = 197/219 (89%) Strand = Plus / Plus Query: 32 gtggcgccgctgatccacgcgctgcggccgctgctgggctccggcaagcacgccggagtg 91 ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct: 320 gtggcaccgctcatccacgcgctgcggccgctcctgggctccggcaagcaagccggcgtg 379 Query: 92 gcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactggaagacggtg 151 |||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 380 gcgtgcgatagctggcggctgggcgtggaggcgtacaacgtgcgggactggaagacggtg 439 Query: 152 cccgcgagctgcgagggctacgtcggccactacatgctcggcagccatttccgccgcgac 211 || || | ||||||||||||||| || |||||||||||||||| ||| ||||| |||||| Sbjct: 440 ccggccaactgcgagggctacgtggggcactacatgctcggcaaccacttccggcgcgac 499 Query: 212 tcccaggtcgtcatcgaccaggccctcgcctatgtcgac 250 | | |||||||||||||||||||| ||||||| |||||| Sbjct: 500 tgcaaggtcgtcatcgaccaggccatcgcctacgtcgac 538
>gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01, complete sequence Length = 135184 Score = 147 bits (74), Expect = 2e-32 Identities = 141/162 (87%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| |||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct: 92232 cgccggcgtggcgtgcgacagctggaggctggcggtggaggcgcacaacgtgatccggtg 92173 Query: 142 gaagacggtgcccgcgagctgcgagggctacgtcggccactacatgctcggcagccattt 201 |||||||||||| || |||||||||||||||||||||||||||||||||||| |||| | Sbjct: 92172 gaagacggtgccggccagctgcgagggctacgtcggccactacatgctcggcggccacta 92113 Query: 202 ccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 |||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 92112 ccgccgcgactcac-cgtcgtcgtcgacgaggccatcgccta 92072 Score = 117 bits (59), Expect = 2e-23 Identities = 138/163 (84%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| |||||||||||||||||| ||| || |||||||| ||||||||| | || Sbjct: 105854 cgccggcgtggcgtgcgacagctggaggctaggcgtggaggcacacaacgtgatcgggtg 105795 Query: 142 gaagacggtgcccgcgagctgcgagggctacgtcggccactacatgctc-ggcagccatt 200 |||||||||||| || || |||||||||||||||||||||||||||||| || |||| | Sbjct: 105794 gaagacggtgccggccaggtgcgagggctacgtcggccactacatgctcgggtggccact 105735 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 |||||| |||||| |||||||||||| ||||| ||||||| Sbjct: 105734 accgccgtgactccgccgtcgtcatcgacgaggccatcgccta 105692 Score = 101 bits (51), Expect = 1e-18 Identities = 137/163 (84%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 83956 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtgatcgactg 83897 Query: 142 gaagacggtgcccg-cgagctgcgagggctacgtcggccactacatgctcggcagccatt 200 || ||||||||| | |||| |||||||||||| |||||||||||||||| ||| || | Sbjct: 83896 gaggacggtgccagccgag-tgcgagggctacatcggccactacatgctaggcgaacact 83838 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 ||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 83837 accgccgcgacttcgccgtcgtcgtcgacgaggccgtcgccta 83795 Score = 93.7 bits (47), Expect = 3e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 92304 cgaggccgtggtggcgccgctcatccacgcgctgcggccgctgctgggctccggc 92250 Score = 85.7 bits (43), Expect = 6e-14 Identities = 52/55 (94%) Strand = Plus / Minus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 105926 cgaggccgtggtggcgccgatcatccacgcgctgcggccgctgctgggctccggc 105872 Score = 69.9 bits (35), Expect = 4e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 84028 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 83974
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 147 bits (74), Expect = 2e-32 Identities = 141/162 (87%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| |||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct: 5559023 cgccggcgtggcgtgcgacagctggaggctggcggtggaggcgcacaacgtgatccggtg 5558964 Query: 142 gaagacggtgcccgcgagctgcgagggctacgtcggccactacatgctcggcagccattt 201 |||||||||||| || |||||||||||||||||||||||||||||||||||| |||| | Sbjct: 5558963 gaagacggtgccggccagctgcgagggctacgtcggccactacatgctcggcggccacta 5558904 Query: 202 ccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 |||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 5558903 ccgccgcgactcac-cgtcgtcgtcgacgaggccatcgccta 5558863 Score = 117 bits (59), Expect = 2e-23 Identities = 138/163 (84%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| |||||||||||||||||| ||| || |||||||| ||||||||| | || Sbjct: 5572645 cgccggcgtggcgtgcgacagctggaggctaggcgtggaggcacacaacgtgatcgggtg 5572586 Query: 142 gaagacggtgcccgcgagctgcgagggctacgtcggccactacatgctc-ggcagccatt 200 |||||||||||| || || |||||||||||||||||||||||||||||| || |||| | Sbjct: 5572585 gaagacggtgccggccaggtgcgagggctacgtcggccactacatgctcgggtggccact 5572526 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 |||||| |||||| |||||||||||| ||||| ||||||| Sbjct: 5572525 accgccgtgactccgccgtcgtcatcgacgaggccatcgccta 5572483 Score = 101 bits (51), Expect = 1e-18 Identities = 137/163 (84%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 5550747 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtgatcgactg 5550688 Query: 142 gaagacggtgcccg-cgagctgcgagggctacgtcggccactacatgctcggcagccatt 200 || ||||||||| | |||| |||||||||||| |||||||||||||||| ||| || | Sbjct: 5550687 gaggacggtgccagccgag-tgcgagggctacatcggccactacatgctaggcgaacact 5550629 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 ||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 5550628 accgccgcgacttcgccgtcgtcgtcgacgaggccgtcgccta 5550586 Score = 93.7 bits (47), Expect = 3e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5559095 cgaggccgtggtggcgccgctcatccacgcgctgcggccgctgctgggctccggc 5559041 Score = 85.7 bits (43), Expect = 6e-14 Identities = 52/55 (94%) Strand = Plus / Minus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 5572717 cgaggccgtggtggcgccgatcatccacgcgctgcggccgctgctgggctccggc 5572663 Score = 69.9 bits (35), Expect = 4e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 5550819 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 5550765 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Minus Query: 139 ctggaagacggtgcccgcgagctgcgagggctacgtcg 176 ||||||||||||||| |||| ||||| |||||||||| Sbjct: 5464424 ctggaagacggtgccggcgaactgcgctggctacgtcg 5464387
>dbj|AK061404.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A01, full insert sequence Length = 1131 Score = 117 bits (59), Expect = 2e-23 Identities = 138/163 (84%), Gaps = 1/163 (0%) Strand = Plus / Plus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| |||||||||||||||||| ||| || |||||||| ||||||||| | || Sbjct: 217 cgccggcgtggcgtgcgacagctggaggctaggcgtggaggcacacaacgtgatcgggtg 276 Query: 142 gaagacggtgcccgcgagctgcgagggctacgtcggccactacatgctc-ggcagccatt 200 |||||||||||| || || |||||||||||||||||||||||||||||| || |||| | Sbjct: 277 gaagacggtgccggccaggtgcgagggctacgtcggccactacatgctcgggtggccact 336 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 |||||| |||||| |||||||||||| ||||| ||||||| Sbjct: 337 accgccgtgactccgccgtcgtcatcgacgaggccatcgccta 379 Score = 85.7 bits (43), Expect = 6e-14 Identities = 52/55 (94%) Strand = Plus / Plus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 145 cgaggccgtggtggcgccgatcatccacgcgctgcggccgctgctgggctccggc 199
>dbj|AK110669.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F12, full insert sequence Length = 953 Score = 101 bits (51), Expect = 1e-18 Identities = 137/163 (84%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 244 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtgatcgactg 303 Query: 142 gaagacggtgcccg-cgagctgcgagggctacgtcggccactacatgctcggcagccatt 200 || ||||||||| | |||| |||||||||||| |||||||||||||||| ||| || | Sbjct: 304 gaggacggtgccagccgag-tgcgagggctacatcggccactacatgctaggcgaacact 362 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 ||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 363 accgccgcgacttcgccgtcgtcgtcgacgaggccgtcgccta 405 Score = 69.9 bits (35), Expect = 4e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 172 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 226
>dbj|AK066719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082K18, full insert sequence Length = 2143 Score = 101 bits (51), Expect = 1e-18 Identities = 137/163 (84%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 242 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtgatcgactg 301 Query: 142 gaagacggtgcccg-cgagctgcgagggctacgtcggccactacatgctcggcagccatt 200 || ||||||||| | |||| |||||||||||| |||||||||||||||| ||| || | Sbjct: 302 gaggacggtgccagccgag-tgcgagggctacatcggccactacatgctaggcgaacact 360 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 ||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 361 accgccgcgacttcgccgtcgtcgtcgacgaggccgtcgccta 403 Score = 69.9 bits (35), Expect = 4e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 170 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 224
>dbj|AK059825.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F04, full insert sequence Length = 1076 Score = 101 bits (51), Expect = 1e-18 Identities = 137/163 (84%), Gaps = 2/163 (1%) Strand = Plus / Plus Query: 82 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtgcgggactg 141 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 244 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtgatcgactg 303 Query: 142 gaagacggtgcccg-cgagctgcgagggctacgtcggccactacatgctcggcagccatt 200 || ||||||||| | |||| |||||||||||| |||||||||||||||| ||| || | Sbjct: 304 gaggacggtgccagccgag-tgcgagggctacatcggccactacatgctaggcgaacact 362 Query: 201 tccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 ||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 363 accgccgcgacttcgccgtcgtcgtcgacgaggccgtcgccta 405 Score = 69.9 bits (35), Expect = 4e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 22 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 76 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 172 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 226
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 30 tggtggcgccgctgatccacgcgctgcggccgc 62 ||||||||||||||||| ||||||||| ||||| Sbjct: 1077692 tggtggcgccgctgatcgacgcgctgctgccgc 1077724
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Minus Query: 26 gcggtggtggcgccgctgatcca 48 ||||||||||||||||||||||| Sbjct: 141389 gcggtggtggcgccgctgatcca 141367
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10, complete sequence Length = 153366 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Minus Query: 139 ctggaagacggtgcccgcgagctgcgagggctacgtcg 176 ||||||||||||||| |||| ||||| |||||||||| Sbjct: 151098 ctggaagacggtgccggcgaactgcgctggctacgtcg 151061
>gb|AY106317.1| Zea mays PCO101473 mRNA sequence Length = 827 Score = 44.1 bits (22), Expect = 0.21 Identities = 37/42 (88%) Strand = Plus / Plus Query: 202 ccgccgcgactcccaggtcgtcatcgaccaggccctcgccta 243 |||||| ||||||| |||||||||||| ||||| ||||||| Sbjct: 11 ccgccgggactcccgcgtcgtcatcgacgaggccatcgccta 52
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Plus Query: 52 gctgcggccgctgctgggctccggcaagca 81 |||||||||||||||||||| || |||||| Sbjct: 1858796 gctgcggccgctgctgggcttcgacaagca 1858825
>gb|AC152973.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNOa0076M01, complete sequence Length = 36050 Score = 44.1 bits (22), Expect = 0.21 Identities = 34/38 (89%) Strand = Plus / Minus Query: 139 ctggaagacggtgcccgcgagctgcgagggctacgtcg 176 ||||||||||||||| |||| ||||| |||||||||| Sbjct: 18755 ctggaagacggtgccggcgaactgcgctggctacgtcg 18718
>ref|XM_477962.1| Oryza sativa (japonica cultivar-group), mRNA Length = 501 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 25 ggcggtggtggcgccgctgatccacgcgc 53 |||||||| ||||||||||||| |||||| Sbjct: 57 ggcggtggcggcgccgctgatcgacgcgc 85
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 ctgcggccgctgctgggctccggca 77 |||||||||||||||||||| |||| Sbjct: 4476736 ctgcggccgctgctgggctcgggca 4476712
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 gcgctgcggccgctgctgggctccg 74 ||||||||||||||||||| ||||| Sbjct: 966839 gcgctgcggccgctgctggactccg 966815
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 25 ggcggtggtggcgccgctgatccacgcgc 53 |||||||| ||||||||||||| |||||| Sbjct: 15937457 ggcggtggcggcgccgctgatcgacgcgc 15937485
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 ccacgcgctgcggccgctgct 66 ||||||||||||||||||||| Sbjct: 7463181 ccacgcgctgcggccgctgct 7463201
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 gcggcggacgtggacgaggcg 28 ||||||||||||||||||||| Sbjct: 4785906 gcggcggacgtggacgaggcg 4785886
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 25 ggcggtggtggcgccgctgatccacgcgc 53 |||||||| ||||||||||||| |||||| Sbjct: 176971 ggcggtggcggcgccgctgatcgacgcgc 176999
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 25 ggcggtggtggcgccgctgatccacgcgc 53 |||||||| ||||||||||||| |||||| Sbjct: 18859 ggcggtggcggcgccgctgatcgacgcgc 18887
>dbj|AK112061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G08, full insert sequence Length = 903 Score = 42.1 bits (21), Expect = 0.84 Identities = 27/29 (93%) Strand = Plus / Plus Query: 25 ggcggtggtggcgccgctgatccacgcgc 53 |||||||| ||||||||||||| |||||| Sbjct: 123 ggcggtggcggcgccgctgatcgacgcgc 151
>ref|XM_508594.1| PREDICTED: Pan troglodytes similar to KIAA1394 protein (LOC451368), mRNA Length = 4191 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 gacgaggcggtggtggcgccgctg 43 ||||||||||||| |||||||||| Sbjct: 1987 gacgaggcggtggcggcgccgctg 2010
>ref|NM_188686.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 369 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cgaggcggtggtggcgccgc 41 |||||||||||||||||||| Sbjct: 304 cgaggcggtggtggcgccgc 285
>ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1806 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcggtggtggcg 37 |||||| ||||||||||| |||||||| |||| Sbjct: 275 cggcggaggacgtggacgcggcggtggcggcg 306
>ref|XM_469899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3159 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cgtcggcggcggacgtggac 22 |||||||||||||||||||| Sbjct: 395 cgtcggcggcggacgtggac 414
>ref|NM_196414.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0060A14.4), mRNA Length = 537 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 ||||||||| |||||||||||||| Sbjct: 86 cggcggcggtcgtggacgaggcgg 109
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 ccgctgatccacgcgctgcggccg 61 ||||||||||||||||||| |||| Sbjct: 106983 ccgctgatccacgcgctgccgccg 107006
>ref|NM_174413.2| Bos taurus proprotein convertase subtilisin/kexin type 2 (PCSK2), mRNA Length = 2092 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ggactggaagacggtgcccg 155 |||||||||||||||||||| Sbjct: 1459 ggactggaagacggtgcccg 1478
>gb|AY492273.1| Corynebacterium vitaeruminis strain CIP 827 RpoB (rpoB) gene, partial cds Length = 3296 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gcacgccggagtggcgtgcg 98 |||||||||||||||||||| Sbjct: 127 gcacgccggagtggcgtgcg 146
>gb|AY658948.1| Synthetic construct Peudomonas aeruginosa clone FLH046900.01F PA1060 gene, partial cds Length = 906 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 cacgcgctgcggccgctgctgggc 70 ||||||| |||||||||||||||| Sbjct: 439 cacgcgccgcggccgctgctgggc 462
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cgtcggcggcggacgtggac 22 |||||||||||||||||||| Sbjct: 31415004 cgtcggcggcggacgtggac 31415023
>ref|XM_756140.1| Ustilago maydis 521 hypothetical protein (UM05086.1) partial mRNA Length = 5505 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ggcggtggtggcgccgctga 44 |||||||||||||||||||| Sbjct: 2532 ggcggtggtggcgccgctga 2513
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 ||||||||| |||||||||||||| Sbjct: 171752 cggcggcggtcgtggacgaggcgg 171775
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cgtcggcggcggacgtggac 22 |||||||||||||||||||| Sbjct: 80796 cgtcggcggcggacgtggac 80777
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 cccaggtcgtcatcgaccag 232 |||||||||||||||||||| Sbjct: 3078619 cccaggtcgtcatcgaccag 3078600
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0044I14, from Chromosome 10, complete sequence Length = 63167 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cggcggcggacgtggacgaggcgg 29 ||||||||| |||||||||||||| Sbjct: 4790 cggcggcggtcgtggacgaggcgg 4767
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 ggacgtggacgaggcggtggtggc 36 |||||||| ||||||||||||||| Sbjct: 4142 ggacgtggtcgaggcggtggtggc 4119
>emb|BX294134.1| Pirellula sp. strain 1 complete genome; segment 2/24 Length = 304450 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cggcagccatttccgccgcg 209 |||||||||||||||||||| Sbjct: 13266 cggcagccatttccgccgcg 13285
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gtcgtcatcgaccaggccctcgcc 241 |||||||||||| ||||||||||| Sbjct: 195232 gtcgtcatcgacaaggccctcgcc 195255
>dbj|AK127616.1| Homo sapiens cDNA FLJ45714 fis, clone FEKID2002637, highly similar to Serine/threonine protein phosphatase PP1-alpha 1 catalytic subunit (EC 3.1.3.16) Length = 1685 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 gacgaggcggtggtggcgccgctg 43 ||||||||||||| |||||||||| Sbjct: 111 gacgaggcggtggcggcgccgctg 88
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 cgctgcggccgctgctgggc 70 |||||||||||||||||||| Sbjct: 1724968 cgctgcggccgctgctgggc 1724987
>ref|XM_941962.1| PREDICTED: Homo sapiens KIAA1394 protein, transcript variant 3 (KIAA1394), mRNA Length = 5056 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 gacgaggcggtggtggcgccgctg 43 ||||||||||||| |||||||||| Sbjct: 2682 gacgaggcggtggcggcgccgctg 2705
>ref|XM_208522.5| PREDICTED: Homo sapiens KIAA1394 protein, transcript variant 1 (KIAA1394), mRNA Length = 5055 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 gacgaggcggtggtggcgccgctg 43 ||||||||||||| |||||||||| Sbjct: 2682 gacgaggcggtggcggcgccgctg 2705
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ggacgaggcggtggtggcgc 38 |||||||||||||||||||| Sbjct: 125683 ggacgaggcggtggtggcgc 125664
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence Length = 151343 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 ||||||||| |||||||||||||| Sbjct: 17880 cggcggcggtcgtggacgaggcgg 17903
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cggtggtggcgccgctgatccacg 50 ||||||||||| |||||||||||| Sbjct: 429845 cggtggtggcggcgctgatccacg 429822
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 |||||||||||||||||| ||||| Sbjct: 66182 cggcggcggacgtggacgcggcgg 66205
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 ||||||||| |||||||||||||| Sbjct: 13325503 cggcggcggtcgtggacgaggcgg 13325526
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcggtggtggcg 37 |||||| ||||||||||| |||||||| |||| Sbjct: 20372954 cggcggaggacgtggacgcggcggtggcggcg 20372985
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cgtcggcggcggacgtggac 22 |||||||||||||||||||| Sbjct: 31505520 cgtcggcggcggacgtggac 31505539
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 cgaggcggtggtggcgccgc 41 |||||||||||||||||||| Sbjct: 7627981 cgaggcggtggtggcgccgc 7628000
>gb|AF186406.1|AF186406 Bos taurus prohormone convertase 2 (PC2) mRNA, complete cds Length = 2092 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ggactggaagacggtgcccg 155 |||||||||||||||||||| Sbjct: 1459 ggactggaagacggtgcccg 1478
>gb|AE004950.1| Pseudomonas aeruginosa PAO1, section 511 of 529 of the complete genome Length = 11213 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cgcgctgcggccgctgctgg 68 |||||||||||||||||||| Sbjct: 5973 cgcgctgcggccgctgctgg 5954
>gb|AE004505.1| Pseudomonas aeruginosa PAO1, section 66 of 529 of the complete genome Length = 11421 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gccgctgatccacgcgctgc 56 |||||||||||||||||||| Sbjct: 511 gccgctgatccacgcgctgc 530
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 cgaggcggtggtggcgccgc 41 |||||||||||||||||||| Sbjct: 38557 cgaggcggtggtggcgccgc 38576
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056L09 Length = 152910 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcggtggtggcg 37 |||||| ||||||||||| |||||||| |||| Sbjct: 120702 cggcggaggacgtggacgcggcggtggcggcg 120733
>emb|X87247.1|PVULSGENE Pseudorabies virus UL21, UL20 & UL19 genes Length = 3797 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 |||||||||||||||||| ||||| Sbjct: 2450 cggcggcggacgtggacgcggcgg 2473
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcggtggtggcg 37 |||||| ||||||||||| |||||||| |||| Sbjct: 3584 cggcggaggacgtggacgcggcggtggcggcg 3615
>dbj|AK109991.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-E07, full insert sequence Length = 3419 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ggacgaggcggtggtggcgc 38 |||||||||||||||||||| Sbjct: 2514 ggacgaggcggtggtggcgc 2533
>dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C02, full insert sequence Length = 1807 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcggtggtggcg 37 |||||| ||||||||||| |||||||| |||| Sbjct: 275 cggcggaggacgtggacgcggcggtggcggcg 306
>dbj|AP003419.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-1337H24, complete sequence Length = 168565 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 gacgaggcggtggtggcgccgctg 43 ||||||||||||| |||||||||| Sbjct: 101538 gacgaggcggtggcggcgccgctg 101561
>dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH2 mRNA for betaine aldehyde dehydrogenase, complete cds Length = 1512 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcggtggtggcg 37 |||||| ||||||||||| |||||||| |||| Sbjct: 128 cggcggaggacgtggacgcggcggtggcggcg 159
>dbj|AB090812.1| Anopheles gambiae retrotransposon RTAg3 DNA, complete sequence Length = 6448 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 actcccaggtcgtcatcgac 229 |||||||||||||||||||| Sbjct: 3072 actcccaggtcgtcatcgac 3091
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 ||||||||| |||||||||||||| Sbjct: 13332843 cggcggcggtcgtggacgaggcgg 13332866
>emb|AL844164.17| Mouse DNA sequence from clone RP23-300I3 on chromosome 4, complete sequence Length = 209214 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cagctgggtgctgggggtgg 119 |||||||||||||||||||| Sbjct: 36203 cagctgggtgctgggggtgg 36184
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ggacgtggacgaggcggtggtggc 36 |||||||| ||||||||||||||| Sbjct: 1558061 ggacgtggccgaggcggtggtggc 1558084
>gb|L37531.1|STMPGLYZ Streptomyces coelicolor bacteriophage (phiC31) resistance (pglY and pglZ) genes, complete cds's Length = 9461 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gtcgtcatcgaccaggccctcgcc 241 |||||||||||| ||||||||||| Sbjct: 2919 gtcgtcatcgacaaggccctcgcc 2942
>gb|L00676.1|SH1ULGNS Pseudorabies virus (Suid herpesvirus 1) UL18 through UL21 genes, complete cds and UL15 gene, 3' end Length = 9382 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cggcggcggacgtggacgaggcgg 29 |||||||||||||||||| ||||| Sbjct: 2450 cggcggcggacgtggacgcggcgg 2473
>gb|M95285.1|SH1UL2XA Suid herpesvirus 1 genes homologous to HSV1 UL20 and UL21 genes, complete cds; and major capsid protein gene, 3' end Length = 2510 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cggcggcggacgtggacgaggcgg 29 |||||||||||||||||| ||||| Sbjct: 730 cggcggcggacgtggacgcggcgg 707
>dbj|AB037815.1| Homo sapiens mRNA for KIAA1394 protein, partial cds Length = 5065 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 gacgaggcggtggtggcgccgctg 43 ||||||||||||| |||||||||| Sbjct: 2688 gacgaggcggtggcggcgccgctg 2711 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,500,484 Number of Sequences: 3902068 Number of extensions: 1500484 Number of successful extensions: 44832 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43264 Number of HSP's gapped (non-prelim): 1553 length of query: 257 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 235 effective length of database: 17,147,199,772 effective search space: 4029591946420 effective search space used: 4029591946420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
