ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor 30 3.7
2SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sem... 29 8.3

>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor|
          Length = 1093

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 448 QCCNTRGAWSCSISWICC 501
           Q C  RGAWSC  SW  C
Sbjct: 847 QACPVRGAWSCWTSWSPC 864



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>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)|
          Length = 1093

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 448 QCCNTRGAWSCSISWICC 501
           Q C  RGAWSC  +W  C
Sbjct: 847 QACPVRGAWSCWTAWSQC 864


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,800,102
Number of Sequences: 219361
Number of extensions: 833238
Number of successful extensions: 2336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2334
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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