ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06c01 |
|---|---|
| Clone Library Name | barley_pub |
>PP2CL_MOUSE (Q8BHN0) Protein phosphatase 2C isoform epsilon (EC 3.1.3.16)| (PP2C-epsilon) (Protein phosphatase 1L) (Protein phosphatase 1-like) Length = 360 Score = 32.3 bits (72), Expect = 0.73 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%) Frame = +1 Query: 205 ELRPHAAGEFSMAAAQANLVMEDQAQVLASPA----ATLVGVYHGHGGPDASRFLRS--- 363 E + H +S+ + + MED+ +VL A ++ G++ GHGG A+ +++S Sbjct: 87 EFKSHNVAVYSIQGRRDH--MEDRFEVLTDLANKTHPSIFGIFDGHGGETAAEYVKSRLP 144 Query: 364 -ALFPHVQRFAQEQ 402 AL H+Q + +++ Sbjct: 145 EALKQHLQDYEKDK 158
>PP2CL_HUMAN (Q5SGD2) Protein phosphatase 2C isoform epsilon (EC 3.1.3.16)| (PP2C-epsilon) (Protein phosphatase 1L) (Protein phosphatase 1-like) Length = 360 Score = 32.0 bits (71), Expect = 0.95 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 8/74 (10%) Frame = +1 Query: 205 ELRPHAAGEFSMAAAQANLVMEDQAQVLASPA----ATLVGVYHGHGGPDASRFLRS--- 363 E + H +S+ + + MED+ +VL A ++ G++ GHGG A+ +++S Sbjct: 87 EFKNHNVAVYSIQGRRDH--MEDRFEVLTDLANKTHPSIFGIFDGHGGETAAEYVKSRLP 144 Query: 364 -ALFPHVQRFAQEQ 402 AL H+Q + +++ Sbjct: 145 EALKQHLQDYEKDK 158
>T7L1A_XENLA (P70062) Transcription factor 7-like 1-A (HMG box transcription| factor 3-A) (TCF-3-A) (xTcf-3) Length = 554 Score = 31.6 bits (70), Expect = 1.2 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Frame = -1 Query: 488 LGQAWRTSCRKSSSA----APNALRIASAVTPPCSWAKRWTWGKRAERRKREASGPPCPW 321 LG+ W + R+ + A ++ S + P SW+ R +GKR ++RKRE P Sbjct: 358 LGRRWHSLSREEQAKYYELARKERQLHSQLYP--SWSARDNYGKR-KKRKREKQSPEMET 414 Query: 320 YTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAA 171 +T T + S + + +M +SPA S + P+A AA Sbjct: 415 HTKTKKMCVQHLPADKSCDSPASSHGSMLDSPAT---PSAALASPAAPAA 461
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -1 Query: 344 ASGPPCPWYTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQ-SMPSAAAAP 168 A+ PP P PT AA +T A AA ++PAA P+A++ P Sbjct: 228 AANPPAPTANPTGPAANPPATTA-----NPPAPAANPSAPAATPTGPAANPPAPAASSTP 282 Query: 167 GGQCP 153 G CP Sbjct: 283 HGHCP 287
>T7L1C_XENLA (P70063) Transcription factor 7-like 1-C (HMG box transcription| factor 3-C) (TCF-3-C) (xTcf-3c) Length = 550 Score = 31.2 bits (69), Expect = 1.6 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Frame = -1 Query: 488 LGQAWRTSCRKSSSA----APNALRIASAVTPPCSWAKRWTWGKRAERRKREASGPPCPW 321 LG+ W + R+ + A ++ S + P SW+ R +GK+ ++RKRE P Sbjct: 357 LGRRWHSLSREEQAKYYELARKERQLHSQLYP--SWSARDNYGKK-KKRKREKQSPEMEN 413 Query: 320 YTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAA 171 YT T + S + + +M +SPA S + P+A AA Sbjct: 414 YTKTKKMCVQHFPSDKSCDSPASSHGSMLDSPAT---PSAALASPAAPAA 460
>T7L1B_XENLA (Q90ZB6) Transcription factor 7-like 1-B (HMG box transcription| factor 3-B) (TCF-3-B) (xTcf-3) Length = 551 Score = 31.2 bits (69), Expect = 1.6 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Frame = -1 Query: 488 LGQAWRTSCRKSSSA----APNALRIASAVTPPCSWAKRWTWGKRAERRKREASGPPCPW 321 LG+ W + R+ + A ++ S + P SW+ R +GK+ ++RKRE P Sbjct: 358 LGRRWHSLSREEQAKYYELARKERQLHSQLYP--SWSARDNYGKK-KKRKREKQSPEMEN 414 Query: 320 YTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAA 171 YT T + S + + +M +SPA S + P+A AA Sbjct: 415 YTKTKKMCVQHFPSDKSCDSPASSHGSMLDSPAT---PSAALASPAAPAA 461
>RNC_PELCD (Q3A4Q8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 232 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +1 Query: 274 QAQVLASPAATLVGVYHGHGGPDASRFLRSALF-PHVQRFAQEQGGV 411 ++ +LA+ L+G GG D+ R + ALF PH+QR A+ + GV Sbjct: 116 KSSLLANTMEALLGAVFCDGGFDSVRRVIEALFIPHIQRAARRKTGV 162
>RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)| Length = 482 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/52 (40%), Positives = 23/52 (44%) Frame = -1 Query: 302 AAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAAPGGQCPQH 147 AA AS A S+ ACA SPAA S S SAAAA P + Sbjct: 18 AAASASAAAASAAASAACA-----SPAATAASGAAASSASAAAASAAAAPNN 64
>AMOT_HUMAN (Q4VCS5) Angiomotin| Length = 1084 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = -1 Query: 314 PTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAA 174 P +VAA A A + A A A SPAA G+ S+ SAAA Sbjct: 912 PVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAA 958
>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21| Length = 1629 Score = 30.4 bits (67), Expect = 2.8 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = -1 Query: 317 TPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAAPGGQ 159 TP +V AG+ S A ++ A AAA N GR +V + +AAAA GQ Sbjct: 1257 TPAAVQAGQNSAQAAAAA---AAAAAAANGMNGVGRVNVPNQLAAAAAAATGQ 1306
>PTP1_ENCCU (O76942) Major polar tube protein precursor (Major PTP)| Length = 395 Score = 30.4 bits (67), Expect = 2.8 Identities = 27/100 (27%), Positives = 40/100 (40%) Frame = -1 Query: 455 SSSAAPNALRIASAVTPPCSWAKRWTWGKRAERRKREASGPPCPWYTPTSVAAGEASTCA 276 S+S A L + T CS A T G++ ++ P Y G + CA Sbjct: 9 SASIALMKLENVYSATALCSNAYGLTPGQQGMAQQ--------PSYVLIPSTPGTIANCA 60 Query: 275 WSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAAPGGQC 156 S + + A SP G++S ++ PSA A G C Sbjct: 61 SGSQDTYSPSPAAPTSPVTPGKTSENETSPSAPAEDVGTC 100
>PP2C1_CAEEL (P49595) Probable protein phosphatase 2C F42G9.1 (EC 3.1.3.16)| (PP2C) Length = 491 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 307 LVGVYHGHGGPDASRFLRSALFPHVQRFAQEQGGVTAEAIRRAF 438 + GVY GHGG + S+F + L ++ + AE +++AF Sbjct: 52 MFGVYDGHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQKAF 95
>T7L1D_XENLA (P70064) Transcription factor 7-like 1-D (HMG box transcription| factor 3-D) (TCF-3-D) (xTcf-3d) Length = 550 Score = 30.0 bits (66), Expect = 3.6 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Frame = -1 Query: 488 LGQAWRTSCRKSSSA----APNALRIASAVTPPCSWAKRWTWGKRAERRKREASGPPCPW 321 LG+ W + R+ + A ++ S + P SW+ R +GK+ ++RKRE P Sbjct: 357 LGRRWHSLSREEQAKYYELARKERQLHSQLYP--SWSARDNYGKK-KKRKREKQSPEMEN 413 Query: 320 YTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAAPGGQ 159 YT T + S + + +M +SPA + P+A + Q Sbjct: 414 YTKTKKMCVQHFPSDKSCDSPASSHGSMLDSPATPSAALASPREPAATHSEEAQ 467
>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein| 5.8) (Ultrahigh sulfur keratin-associated protein 5.8) (Keratin, ultra high-sulfur matrix protein B) (UHS keratin B) (UHS KerB) Length = 187 Score = 30.0 bits (66), Expect = 3.6 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = -1 Query: 329 CPWYTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGR---SSVCQS 192 C Y P ++G S+C SS + C+ + P +C SS CQS Sbjct: 88 CSCYKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCSCSSGCGSSCCQS 136
>Y203_MYCPN (Q50284) Very hypothetical adhesin P1-like protein MPN203| (GT9_orf127) Length = 127 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/47 (31%), Positives = 18/47 (38%) Frame = -1 Query: 395 WAKRWTWGKRAERRKREASGPPCPWYTPTSVAAGEASTCAWSSMTRL 255 W RW W KR + A P P P TC W S+ +L Sbjct: 3 WPFRWVWWKRVLTSQTRAPAKPNPLTVP--------PTCTWWSLRKL 41
>KCNQ1_HUMAN (P51787) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 676 Score = 30.0 bits (66), Expect = 3.6 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = -1 Query: 425 IASAVTPPCSWAKRWTWGKRAERRKREAS-GPPCPWYTPTSVAAGEASTCAWSSMTRLAC 249 +A+A +PP + KRW WG+ R+ A CP ++ G A ++ + A Sbjct: 1 MAAASSPPRAERKRWGWGRLPGARRGSAGLAKKCP-FSLELAEGGPAGGALYAPIAPGAP 59 Query: 248 AAAMENSPAA 219 A SPAA Sbjct: 60 GPAPPASPAA 69
>TNR8_HUMAN (P28908) Tumor necrosis factor receptor superfamily member 8| precursor (CD30L receptor) (Lymphocyte activation antigen CD30) (KI-1 antigen) Length = 595 Score = 29.6 bits (65), Expect = 4.7 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = -1 Query: 362 ERRKREASGP-PCPWYTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMP 186 E K +SG P TP S A AST TRLA AA + + A SSV + Sbjct: 164 ENCKEPSSGTIPQAKPTPVSPATSSASTMPVRGGTRLAQEAASKLTRAPDSPSSVGRPSS 223 Query: 185 SAAAAPGGQCPQ 150 +P CP+ Sbjct: 224 DPGLSPTQPCPE 235
>YI31_AGRT7 (P05680) Insertion element IS136 hypothetical 16.9 kDa protein| Length = 159 Score = 29.6 bits (65), Expect = 4.7 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Frame = -1 Query: 455 SSSAAPNALRIASAVTPPCSWAKRWTWGKRAERRKREASGPPCPWYTPTSVAAGEASTCA 276 S S+ PN IAS VT PC W + + A R S P AG + A Sbjct: 69 SLSSTPNG-SIASWVTTPCYWRSTQPFARAASTMARSWSCAP--------TCAG--ARTA 117 Query: 275 WSSMTRLACA-AAMENSPAACGRSSVCQSMPSAA 177 WSS +A + + +S + RSS + +P A Sbjct: 118 WSSPAGMARSFVSPSSSTPSTARSSPGRPLPMQA 151
>KIFC2_HUMAN (Q96AC6) Kinesin-like protein KIFC2| Length = 838 Score = 29.6 bits (65), Expect = 4.7 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 20/102 (19%) Frame = -1 Query: 443 APNALRIASAVTPPCS----WAKRWTWGKRAERRKR-------------EASGPPCPWYT 315 +P RI+ + P S W K W+WG+ R + GPP P Sbjct: 734 SPRGRRISGRQSAPSSSPTEWVK-WSWGQPGAAGSRAPPGRLLPSAPTLRSPGPPAPLRR 792 Query: 314 PTSVAAGEASTCAWSSMTR--LACAAAMENSPAACG-RSSVC 198 P +V T A + ++R AC ++ + P G R +C Sbjct: 793 PLAVLHAPVPTTARARLSRPQRACPSSPGSRPCPWGLRPGLC 834
>PP2C2_SCHPO (Q09172) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 370 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/60 (25%), Positives = 29/60 (48%) Frame = +1 Query: 289 ASPAATLVGVYHGHGGPDASRFLRSALFPHVQRFAQEQGGVTAEAIRRAFGAAEEDFLHE 468 ++P + GV+ GHGG +++ R L ++ G EA++ F AA+ + + Sbjct: 52 SNPPTSFFGVFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQD 111
>KRA57_HUMAN (Q6L8G8) Keratin-associated protein 5-7 (Keratin-associated protein| 5.7) (Ultrahigh sulfur keratin-associated protein 5.7) (Keratin-associated protein 5-3) (Keratin-associated protein 5.3) Length = 165 Score = 29.3 bits (64), Expect = 6.2 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Frame = -1 Query: 329 CPWYTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGR---SSVCQS 192 C Y P ++G S+C SS + C + P C SS CQS Sbjct: 95 CSCYKPCCCSSGCGSSCCQSSCCKPCCCQSSCCKPCCCSSGCGSSCCQS 143
>MUTS_THIDA (Q3SJP0) DNA mismatch repair protein mutS| Length = 850 Score = 29.3 bits (64), Expect = 6.2 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +1 Query: 148 CCGHWPPGAAAADGMLWQTELRPHAAGEFSMAAAQANLVMEDQAQVLASPAA 303 CCG W P A+A G + Q R A+ + + + + M + A +L S A Sbjct: 629 CCGLWVPAASARIGAIDQIFTRIGASDDLAGGRSTFMVEMTETANILHSATA 680
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 28.9 bits (63), Expect = 8.1 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -1 Query: 329 CPWYTPTSVAAGEASTCAWSSMTRLACAAAMENSPAACGRSSVCQSMPSAAAAPGGQCPQ 150 C Y P ++G S+C SS + +C+ + P C +SS C+ ++ G C Q Sbjct: 129 CSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKP-CCSQSSCCKPC-CCSSGCGSSCCQ 186
>TPIS1_BRUSU (Q8G0F7) Triosephosphate isomerase 1 (EC 5.3.1.1) (TIM 1)| (Triose-phosphate isomerase 1) Length = 254 Score = 28.9 bits (63), Expect = 8.1 Identities = 28/92 (30%), Positives = 39/92 (42%) Frame = +1 Query: 202 TELRPHAAGEFSMAAAQANLVMEDQAQVLASPAATLVGVYHGHGGPDASRFLRSALFPHV 381 TELR AAG S + + V+ A +L+ A TL G G GG DA H Sbjct: 23 TELRAIAAGLSSDLGRKLDAVICVPATLLSRAAETLEGETVGLGGQDA----------HF 72 Query: 382 QRFAQEQGGVTAEAIRRAFGAAEEDFLHEVRQ 477 + G ++ E ++ A GA H R+ Sbjct: 73 KTSGAHTGDISPEMLKEA-GATHVILGHSERR 103
>TPIS1_BRUME (Q8YHF5) Triosephosphate isomerase 1 (EC 5.3.1.1) (TIM 1)| (Triose-phosphate isomerase 1) Length = 254 Score = 28.9 bits (63), Expect = 8.1 Identities = 28/92 (30%), Positives = 39/92 (42%) Frame = +1 Query: 202 TELRPHAAGEFSMAAAQANLVMEDQAQVLASPAATLVGVYHGHGGPDASRFLRSALFPHV 381 TELR AAG S + + V+ A +L+ A TL G G GG DA H Sbjct: 23 TELRAIAAGLSSDLGRKLDAVICVPATLLSRAAETLEGETVGLGGQDA----------HF 72 Query: 382 QRFAQEQGGVTAEAIRRAFGAAEEDFLHEVRQ 477 + G ++ E ++ A GA H R+ Sbjct: 73 KTSGAHTGDISPEMLKEA-GATHVILGHSERR 103
>TPIS1_BRUAB (Q57D01) Triosephosphate isomerase 1 (EC 5.3.1.1) (TIM 1)| (Triose-phosphate isomerase 1) Length = 254 Score = 28.9 bits (63), Expect = 8.1 Identities = 28/92 (30%), Positives = 39/92 (42%) Frame = +1 Query: 202 TELRPHAAGEFSMAAAQANLVMEDQAQVLASPAATLVGVYHGHGGPDASRFLRSALFPHV 381 TELR AAG S + + V+ A +L+ A TL G G GG DA H Sbjct: 23 TELRAIAAGLSSDLGRKLDAVICVPATLLSRAAETLEGETVGLGGQDA----------HF 72 Query: 382 QRFAQEQGGVTAEAIRRAFGAAEEDFLHEVRQ 477 + G ++ E ++ A GA H R+ Sbjct: 73 KTSGAHTGDISPEMLKEA-GATHVILGHSERR 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,791,661 Number of Sequences: 219361 Number of extensions: 813699 Number of successful extensions: 3630 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3614 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
