>UBXD2_HUMAN (Q92575) UBX domain-containing protein 2|
          Length = 508

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 37/108 (34%), Positives = 57/108 (52%)
 Frame = +2

Query: 176 LTYKGSIPDAINQSRREKKLFVIYISGQDETSSNLEQSTLVDEHVAAVISRCCVFLQLXQ 355
           L ++G+IP AI  ++R   +FV++++G DE S+ +  S   D+ V    S   V +++  
Sbjct: 2   LWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASW-EDDKVTEASSNSFVAIKIDT 60

Query: 356 GDVDTLQFSAIYPQKSVPSISVIGLNGAMLWNHEGYISPEDLKESIEK 499
                LQFS IYP   VPS   IG +G  L    G +S ++L   I K
Sbjct: 61  KSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHK 108

>UBXD2_MOUSE (Q8VCH8) UBX domain-containing protein 2|
          Length = 506

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 38/108 (35%), Positives = 56/108 (51%)
 Frame = +2

Query: 176 LTYKGSIPDAINQSRREKKLFVIYISGQDETSSNLEQSTLVDEHVAAVISRCCVFLQLXQ 355
           L ++G+IP AI  ++R   +FV++++G DE S  +  S   DE V    S   V +++  
Sbjct: 2   LWFQGAIPAAIASAKRSGAVFVVFVAGDDEQSIQMAASW-EDEKVTQASSNNFVAIKIDT 60

Query: 356 GDVDTLQFSAIYPQKSVPSISVIGLNGAMLWNHEGYISPEDLKESIEK 499
                LQFS IYP   VPS   IG +G  L    G +S ++L   I K
Sbjct: 61  KSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHK 108

>YOJ8_CAEEL (P34631) Hypothetical protein ZK353.8 in chromosome III|
          Length = 469

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = +2

Query: 182 YKGSIPDAINQSRREKKLFVIYISGQDETSSNLEQSTLVDEHVAAVISRCCVF-LQLXQG 358
           + G++  AI  SR+ K L ++YI+   E     +      +H+ +    C V  ++L  G
Sbjct: 4   FGGNVATAIQISRKNKALLIVYITTDSEDGQIFDGFW---QHIDSSNLLCAVVGIKLKAG 60

Query: 359 DVDTLQFSAIYPQKSVPSISVIGLNGAML 445
           +    QF+ IYP   +P+  +I  NG  L
Sbjct: 61  ETSAQQFADIYPTPILPAAYLIDQNGKPL 89

>UBX2_SCHPO (O14048) UBX domain-containing protein 2|
          Length = 427

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = +2

Query: 191 SIPDAINQSRREKKLFVIYISGQDETSSNLEQSTL-----VDEHVAAVISRCCVFLQLXQ 355
           S+ +A  ++  +K+  ++ +    +TS++ E   L      DE V  VI    +FLQL  
Sbjct: 160 SLDEARIEASSQKRWILVNL----QTSTSFECQVLNRDLWKDESVKEVIRAHFLFLQLLD 215

Query: 356 GDVDTLQFSAIYPQKSVPSISVI 424
            +   ++F   YP +S P I+++
Sbjct: 216 DEEPGMEFKRFYPVRSTPHIAIL 238

>UBX6_YEAST (P47049) UBX domain-containing protein 6|
          Length = 396

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +2

Query: 215 SRREKKLFVIYISGQDETSSNLEQ----STLVDEHVAAVISRCCVFLQLXQGDVDTLQFS 382
           S   +++ V+YIS     +S L Q      L DE    ++     +++L  G  + L F 
Sbjct: 20  SHTSEQVIVVYISSAAGDNSWLHQWFKPGNLSDEERENIL-----WVRLVNGTKECLLFK 74

Query: 383 AIYPQKSVPSISVI 424
           +I+P  S PSI+++
Sbjct: 75  SIFPSSSAPSINIL 88

>FLGI2_PHOPR (Q6LTQ6) Flagellar P-ring protein 2 precursor (Basal body P-ring|
           protein 2)
          Length = 363

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 49  RISRLPTVAGPRSRLLVGYSAAPLPPPSGSTFPSVDGNHN 168
           RI  +  VAG RS  LVGY      P +G T P  D + N
Sbjct: 22  RIKDVSEVAGVRSNQLVGYGLVVGLPGTGETTPFTDQSFN 61

>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 94

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 218 RREKKLFVIYISGQDETSSNLEQSTL-VDEHV 310
           RRE+ L   Y+ G+D T +NL   TL  +EHV
Sbjct: 7   RREENLLEFYLEGEDHTFANLLTETLHENEHV 38

>FLGI_VIBCH (Q9KQ14) Flagellar P-ring protein precursor (Basal body P-ring|
           protein)
          Length = 361

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 31  SSLLNTRISRLPTVAGPRSRLLVGYSAAPLPPPSGSTFPSVDGNHN*FLDVQG 189
           SS    RI  +  VAG R+  LVGY      P +G + P  D + N  L   G
Sbjct: 14  SSAQAARIKDVAQVAGVRNNQLVGYGLVTGLPGTGESTPFTDQSFNAMLQSFG 66

>FLGI_VIBF1 (Q5E3N1) Flagellar P-ring protein precursor (Basal body P-ring|
           protein)
          Length = 373

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 25  NLSSLLNTRISRLPTVAGPRSRLLVGYSAAPLPPPSGSTFPSVDGNHN 168
           ++S+    RI  +  VAG RS  L+GY      P +G + P  D + N
Sbjct: 24  SISTAHAARIKDVAEVAGVRSNQLIGYGLVSGLPGTGESTPFTDQSFN 71

>KDSA_CAUCR (Q9A8C5) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS)
          Length = 287

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = -2

Query: 510 AAQAFSMLSLRSSGLIYPS*FHSIAPFSPMTDILGTDFCG*IAEN*SVSTSPCXSCKNTQ 331
           +A A   + L+ S  I+      +     +TD+  T  C  +AE   V   P   C+ T 
Sbjct: 77  SANAQRGIGLKDSLAIFQE-IREVTGLPTLTDVHETSHCSIVAEAVDVIQIPAFLCRQTD 135

Query: 330 HLLITAATCSSTNVDCSKLL 271
            L+  A+T  + N+   + L
Sbjct: 136 LLVAAASTGRAINIKKGQFL 155

>BORG1_MOUSE (Q8JZX9) Cdc42 effector protein 2 (Binder of Rho GTPases 1)|
          Length = 214

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +1

Query: 22  ENLSSLLNTRISRLPTVAGPRSRLLVGYSAAPLPP------PSGSTFPSVDGNHN 168
           + LS LL   IS LP + GP++  L    A P PP      P  S  PS  G  N
Sbjct: 98  DGLSPLLKNAIS-LPVIGGPQALTLPTAQAPPKPPRLHLESPQPSPQPSPQGAGN 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,399,950
Number of Sequences: 219361
Number of extensions: 1317382
Number of successful extensions: 3243
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3241
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)