ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1SLT11_ASPFU (Q4W9V0) Pre-mRNA-splicing factor slt11 52 7e-07
2SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11 52 9e-07
3SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed w... 52 9e-07
4SLT11_NEUCR (Q7RUX3) Pre-mRNA-splicing factor slt-11 50 3e-06
5SLT11_YARLI (Q6C3L4) Pre-mRNA-splicing factor SLT11 48 1e-05
6SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11 43 5e-04
7CWC2_DEBHA (Q6BLU8) Pre-mRNA-splicing factor CWC2 42 9e-04
8RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-bindin... 41 0.002
9CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C... 41 0.002
10CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C... 41 0.002
11NAM8_YEAST (Q00539) Protein NAM8 40 0.003
12NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA... 40 0.004
13CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 39 0.010
14YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 39 0.010
15YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 38 0.013
16ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 38 0.017
17SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl... 37 0.022
18SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD... 37 0.022
19SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (C... 37 0.022
20NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul... 37 0.028
21TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein) 36 0.063
22TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein) 36 0.063
23DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei... 35 0.082
24TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1) 35 0.14
25RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-bindi... 35 0.14
26RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi... 35 0.14
27BOLL_MACFA (Q8WP23) Protein boule-like 34 0.18
28BOLL_HUMAN (Q8N9W6) Protein boule-like 34 0.18
29TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p... 34 0.18
30BOLL_MOUSE (Q924M5) Protein boule-like 34 0.24
31RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin... 34 0.24
32CWC2_CANAL (Q59W50) Pre-mRNA-splicing factor CWC2 34 0.24
33RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 34 0.24
34LSM10_HUMAN (Q969L4) U7 snRNA-associated Sm-like protein LSm10 33 0.31
35ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (... 33 0.31
36ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 33 0.31
37ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (... 33 0.31
38ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 33 0.31
39BOULE_DROME (Q24207) Protein boule 33 0.31
40ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 33 0.31
41ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 33 0.31
42PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 33 0.41
43CWC2_LEPMC (Q6T412) Pre-mRNA-splicing factor CWC2 33 0.41
44RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h... 33 0.41
45FCA_ARATH (O04425) Flowering time control protein FCA 33 0.41
46YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C 33 0.53
47CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit... 33 0.53
48ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 33 0.53
49CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit... 33 0.53
50ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 33 0.53
51DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein) 33 0.53
52ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 33 0.53
53ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 33 0.53
54ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (... 33 0.53
55ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ... 32 0.70
56YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ... 32 0.70
57CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit... 32 0.70
58CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit... 32 0.70
59CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit... 32 0.70
60CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit... 32 0.70
61DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso... 32 0.91
62DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso... 32 0.91
63DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso... 32 0.91
64CWC2_ASPFU (Q4WU07) Pre-mRNA-splicing factor cwc2 32 0.91
65PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin... 32 0.91
66YML7_YEAST (Q03735) Hypothetical 126.1 kDa protein in NDI1-ATR1 ... 32 0.91
67DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso... 32 1.2
68HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2... 32 1.2
69HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ... 32 1.2
70HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ... 32 1.2
71HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn... 32 1.2
72CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2 32 1.2
73HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h... 32 1.2
74CWC2_EMENI (Q5BB35) Pre-mRNA-splicing factor cwc2 32 1.2
75CWC2_SCHPO (P87126) Pre-mRNA-splicing factor cwc2 (Complexed wit... 31 1.6
76RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri... 31 2.0
77RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F... 31 2.0
78RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho... 31 2.0
79ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E... 30 2.7
80ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR) 30 2.7
81CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2 30 2.7
82HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65) 30 2.7
83SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9 30 2.7
84PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 30 2.7
85SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9 30 2.7
86SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr... 30 2.7
87RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h... 30 2.7
88SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1 30 3.5
89NRD1_YEAST (P53617) Protein NRD1 30 3.5
90CWC2_KLULA (Q6CT50) Pre-mRNA-splicing factor CWC2 30 4.5
91MEOX1_HUMAN (P50221) Homeobox protein MOX-1 (Mesenchyme homeobox 1) 30 4.5
92SPEN_DROME (Q8SX83) Protein split ends 30 4.5
93RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p... 30 4.5
94RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p... 30 4.5
95RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS... 29 5.9
96YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5 29 5.9
97DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3 29 5.9
98RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss... 29 5.9
99DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1 29 5.9
100DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2 29 5.9
101GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon... 29 5.9
102DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4 29 5.9
103CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed wit... 29 5.9
104CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2 29 7.7
105RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ... 29 7.7
106RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ... 29 7.7
107PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 29 7.7
108ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 29 7.7
109RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa... 29 7.7
110ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot... 29 7.7 
>SLT11_ASPFU (Q4W9V0) Pre-mRNA-splicing factor slt11|
          Length = 383

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 31/106 (29%), Positives = 48/106 (45%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXX 187
           PP D  I +L++ G++  + E  LR  F   G++ S     +  CAF+ + T        
Sbjct: 235 PPADPNIMSLFVTGVEDDLPEHTLRTFFTQFGQLRSLICSHRAHCAFINFATREGAEAAA 294

Query: 188 XXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHGGLLPRA 325
                K VI G  L++ WGKP+ P  + D   R  +   G L  +A
Sbjct: 295 QHCKGKAVIQGCPLRVRWGKPK-PLDNMDREERMKNAREGRLTVQA 339
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>SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11|
          Length = 385

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXX 187
           PP D  I +L++ G++  + E  LR  F   G++ S     +  CAF+ Y          
Sbjct: 230 PPADPNITSLFVTGVEDDLPEHALRSFFVQFGQLRSLVCSHRAHCAFINYAARESAEAAA 289

Query: 188 XXXXNKLVIXGVRLKLMWGKPQA 256
                K V+ G  L++ WGKP+A
Sbjct: 290 KHCQGKAVVQGCPLRVRWGKPKA 312
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>SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed with cdc5|
           protein 5) (Cell cycle control protein cwf5)
          Length = 354

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXX 187
           PP D+ I +L++ G++  +++  +R  F  +G ++S     +  CAFV + T        
Sbjct: 205 PPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRAKCAFVNFKTRSSAEIAA 264

Query: 188 XXXXN-KLVIXGVRLKLMWGKPQA 256
               +  +VI G RLK+ WGKP++
Sbjct: 265 AASPDGNVVIEGFRLKVQWGKPRS 288
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>SLT11_NEUCR (Q7RUX3) Pre-mRNA-splicing factor slt-11|
          Length = 392

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXX 187
           PP D++I +L++ G++  + E  +RD F A G+I+S  +      AFV Y T        
Sbjct: 232 PPADKSIMSLFVTGIEDDLPEFKIRDFFKAFGKIKSLVVSHMSHAAFVNYETREAAEKAS 291

Query: 188 XXXXNKLVIXGVRLKLMWGKPQA 256
                + VI G  L++ W  P+A
Sbjct: 292 AECKGRAVIAGCPLRVRWSVPKA 314
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>SLT11_YARLI (Q6C3L4) Pre-mRNA-splicing factor SLT11|
          Length = 356

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = +2

Query: 2   SPPPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRA-CAFVTYTTXXXXX 178
           +P P D +I++L+  G++  + E  +R  F   G   S   V+ RA C +V + T     
Sbjct: 214 TPVPKDASIKSLFFMGVEDDLPEHVIRKHFTETGGTISLLTVVHRAHCGYVVFETRAAAE 273

Query: 179 XXXXXXXN-KLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHV 298
                    +LV+ G RL++ WGKP+      D   + G +
Sbjct: 274 KAAAAISGGRLVLNGCRLRVAWGKPRNLGSSSDEQWKLGQM 314
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>SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11|
          Length = 324

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
 Frame = +2

Query: 5   PPPDDETIRTLYIGGLDXRVSEQDLRDQFYAH-------GEIESXRMVIQRACAFVTYTT 163
           PPP D ++R+L+I  L     E+    QF+          +I+S  +V    CAFV + T
Sbjct: 219 PPPSDASVRSLFISNLPPEHLEEPSIRQFFLDLAPPLQAQDIKSITLVRASNCAFVNFAT 278

Query: 164 XXXXXXXXXXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHV 298
                        K+ +    ++LMWG+ +  + +++   ++  V
Sbjct: 279 RDHAELAARRCEPKMRLGDKEIRLMWGRSRPVKRNEENECKKAEV 323
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>CWC2_DEBHA (Q6BLU8) Pre-mRNA-splicing factor CWC2|
          Length = 339

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 29  RTLYIGGL--DXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXN 202
           RTLYIGGL  D ++ E  L   F   G I+  R++  +ACAFVT+ T            N
Sbjct: 157 RTLYIGGLHMDDKM-ENTLTKHFQEFGSIDKIRVLHSKACAFVTFRTENEAQFAKEAMQN 215

Query: 203 KLVIXGVRLKLMWGKPQAPRPD 268
           + +     L + W   + P P+
Sbjct: 216 QSLDGNEVLNIRWAN-EDPNPE 236
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>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein|
           16)
          Length = 1271

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
 Frame = +2

Query: 5   PPPDDETIR----TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFV 151
           PP   +T+     TL++G +D + ++QDL + F   G+IES  M+  R CA+V
Sbjct: 465 PPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYV 517
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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV-----IQRACAFVTYTT 163
           R L+IG +  + +E D+R  F + G+IE  R++     + R CAFVT+TT
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 157



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +2

Query: 11  PDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRA--------CAFVTYTTX 166
           PD + I+ +++G +    SE+DLR+ F  +G +    ++  R+        C FVT+ T 
Sbjct: 11  PDLDAIK-MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTR 69

Query: 167 XXXXXXXXXXXNKLVIXGV 223
                      N  V+ G+
Sbjct: 70  KAALEAQNALHNMKVLPGM 88
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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV-----IQRACAFVTYTT 163
           R L+IG +  + +E D+R  F + G+IE  R++     + R CAFVT+TT
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 157



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +2

Query: 11  PDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRA--------CAFVTYTTX 166
           PD + I+ +++G +    SE+DLR+ F  +G +    ++  R+        C FVT+ T 
Sbjct: 11  PDLDAIK-MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR 69

Query: 167 XXXXXXXXXXXNKLVIXGV 223
                      N  V+ G+
Sbjct: 70  KAALEAQNALHNMKVLPGM 88
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>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +2

Query: 17  DETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXX 196
           D    T++IGGL   V+E +LR  F   G I   ++ + + C FV Y             
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368

Query: 197 XNKLVIXGVRLKLMWGK 247
                I   R++L WG+
Sbjct: 369 QG-FPIANSRVRLSWGR 384
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>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding|
           protein RBP1)
          Length = 672

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +2

Query: 17  DETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXX 196
           D T  T+++GGL  + +E  LR  F   G I + R+   + C FV +             
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415

Query: 197 XNKLVIXGVRLKLMWGKPQA--PRPDDDXAGRQGHVSHGGL 313
               ++ G  ++L WG+P +   + +    G   ++S  GL
Sbjct: 416 QG-FIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGL 455
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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 211
           T+++GGL   +SE+DL+  F   G I + ++   + C FV Y+               LV
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALV 357

Query: 212 IXGVRLKLMWGKPQAP 259
                ++L WG    P
Sbjct: 358 GTS-HIRLAWGHNTLP 372
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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +2

Query: 17  DETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXX 196
           D    T+++GGL   VSE++L+  F   GEI   ++   + C FV +             
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQL 358

Query: 197 XNKLVIXGVRLKLMWGKPQAP 259
                +   R++L WG+ Q P
Sbjct: 359 QG-YPLGNSRIRLSWGRNQNP 378
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>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 17  DETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXX 196
           D   RT+++G L  +    ++ D    HG ++    + ++   FVT+ T           
Sbjct: 405 DNGNRTVFLGNLHTKTKGHEICD-LIRHGGLQDFHYIPEKHICFVTFITYSAANAFHDYL 463

Query: 197 XNK-LVIXGVRLKLMWGKPQAPRP 265
             + +++ G R+K+ WGK   P P
Sbjct: 464 AEEEVLLHGRRIKVGWGKESGPLP 487
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>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTYTTXX 169
           P    T++ L++GG+   + E DLRD F  +G + S  +V+      +R  AFV +    
Sbjct: 101 PEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYD 160

Query: 170 XXXXXXXXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHG 307
                     ++  I G  + +    P+   P     G +G V  G
Sbjct: 161 PVDKICLSRNHQ--IRGKHIDVKKALPKGDAPGGRGGGGRGGVGGG 204



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +2

Query: 14  DDETIRTLYIGGLDXRVSEQDLRDQFYAHGEI------ESXRMVIQRACAFVTYT 160
           + E +R L+IGGLD R +++ L+  F   GEI      +  +    R   F+TY+
Sbjct: 12  EPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66
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>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
 Frame = +2

Query: 14  DDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTYT 160
           DD+  R L++GGL    +E++LRD F  +GEIES  +         R  AF+ +T
Sbjct: 53  DDD--RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFT 105
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>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFV 151
           TL++G LD R ++QD+       G IES  M+  R CA++
Sbjct: 423 TLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYI 462
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>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4)
          Length = 1147

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFV 151
           TL++G LD R ++QD+       G IES  M+  R CA++
Sbjct: 509 TLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYI 548
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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 37.0 bits (84), Expect = 0.028
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKL 208
           R +YIG  D  ++ + L++ F   GEIE      ++ CAFV +T+             K 
Sbjct: 414 RNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRIKQKK 473

Query: 209 VIXGVRLKLMWGKPQAPRP 265
                R+   +GK +   P
Sbjct: 474 GYENYRIS--YGKDRCGNP 490



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +2

Query: 5   PPPDDET--IRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTY-TTXXXX 175
           P P++ T  ++T+Y+G L       ++       G IES  ++ ++ CAF+++       
Sbjct: 105 PLPNNTTQPVKTVYVGNLPPNTPIDEILSCVRT-GPIESAWILPEKNCAFISFLDPSHAT 163

Query: 176 XXXXXXXXNKLVIXGVRLKLMWGKPQA 256
                    +L I G  +K+ WGK  A
Sbjct: 164 AFFQDAALKRLTIRGTEVKVGWGKNSA 190



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTT-XXXXXXXXXXXXNK 205
           RT+YIG +    + +++ +     G + + R + ++   FVT+               + 
Sbjct: 323 RTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIHG 381

Query: 206 LVIXGVRLKLMWGKPQAPRPDD 271
           LVI   RLK+ WGK   P P +
Sbjct: 382 LVIRNRRLKIGWGKHSGPLPSN 403
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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 35.8 bits (81), Expect = 0.063
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 211
           T+Y GG+   +++Q +R  F   G+I   R+  ++  +FV ++T            N   
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST-HESAAHAIVSVNGTT 281

Query: 212 IXGVRLKLMWGK 247
           I G  +K  WGK
Sbjct: 282 IEGHVVKCYWGK 293
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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 35.8 bits (81), Expect = 0.063
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 211
           T+Y GG+   +++Q +R  F   G+I   R+  ++  +FV ++T            N   
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST-HESAAHAIVSVNGTT 264

Query: 212 IXGVRLKLMWGK 247
           I G  +K  WGK
Sbjct: 265 IEGHVVKCYWGK 276



 Score = 29.3 bits (64), Expect = 5.9
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
 Frame = +2

Query: 14  DDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRAC----AFVTYTTXXXXXX 181
           DD   RTLY+G L   V+E  +   F   G  +S +M+ +        FV +        
Sbjct: 4   DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63

Query: 182 XXXXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHGGLLP 319
                  + ++ G  +K+ W    + +  D       HV  G L P
Sbjct: 64  ALAAMNGRKIL-GKEVKVNWATTPSSQKKD--TSNHFHVFVGDLSP 106
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>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 35.4 bits (80), Expect = 0.082
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P    T  TL++GG+D +V E ++R+ F  +G ++  +++  R
Sbjct: 40  PEGKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYR 82
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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 211
           T+Y GG+   ++EQ +R  F   G+I   R+   +  +FV +++            N   
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSS-HESAAHAIVSVNGTT 273

Query: 212 IXGVRLKLMWGK 247
           I G  +K  WGK
Sbjct: 274 IEGHVVKCYWGK 285
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>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 564

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +2

Query: 5   PPPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D    R L+IG LD  VSE +LR  F  +G IE   +VI+R
Sbjct: 2   PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIE--EVVIKR 43
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>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +2

Query: 5   PPPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D    R L+IG LD  VSE +LR  F  +G IE   +VI+R
Sbjct: 2   PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIE--EVVIKR 43
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>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRA-----CAFVTYTT 163
           +++GG+D + +E DLR  F  +G ++  ++V  RA       FVT+ T
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFET 82
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>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRA-----CAFVTYTT 163
           +++GG+D + +E DLR  F  +G ++  ++V  RA       FVT+ T
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFET 82
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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 211
           T+Y GG+   ++EQ +R  F   G+I   R+   +  +FV + +            N   
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNS-HESAAHAIVSVNGTT 273

Query: 212 IXGVRLKLMWGK 247
           I G  +K  WGK
Sbjct: 274 IEGHVVKCYWGK 285
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>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRA-----CAFVTYTT 163
           +++GG+D + +E DLR  F  +G ++  ++V  RA       F+T+ T
Sbjct: 35  IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFET 82
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>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 2   SPPPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEI 109
           SP  D    RTL++G LD  V+E DLR  F   G I
Sbjct: 365 SPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVI 400
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>CWC2_CANAL (Q59W50) Pre-mRNA-splicing factor CWC2|
          Length = 363

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 32  TLYIGGLDXRVS-EQDLRDQFYAHGEIESXRMVIQRACAFVTYTT 163
           TLY+GG+  + + EQ L   F   G +E  R++  + CAFVT  T
Sbjct: 142 TLYVGGIHIKPNTEQLLVKNFQEFGTVEKVRVLQGKGCAFVTMKT 186
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>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           T++ L++GG+     E  LR+ F  +G+IES  ++       +R   FVT+
Sbjct: 98  TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTF 148
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>LSM10_HUMAN (Q969L4) U7 snRNA-associated Sm-like protein LSm10|
          Length = 123

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYT 160
           + + GL  RV+  DLRD+  AHG I++    +    A VTYT
Sbjct: 19  ILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYT 60
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>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV------IQRACAFVTY 157
           T++ +++GG+     E +LRD F  +G+IE+  ++       +R  AFVT+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTYTTXXXXXXX 184
           T++ +++GG+     E  LRD F  +G+IE   ++       +R  AFVT+         
Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161

Query: 185 XXXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHGG 310
                + +      ++    K +         GR G  + GG
Sbjct: 162 VIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGG 203
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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTYTTXXXXXXX 184
           T++ +++GG+     E  LRD F  +G+IE   ++       +R  AFVT+         
Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 161

Query: 185 XXXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHGG 310
                + +      ++    K +         GR G  + GG
Sbjct: 162 VIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGG 203
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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTYTTXXXXXXX 184
           T++ +++GG+     E  LRD F  +G+IE   ++       +R  AFVT+         
Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161

Query: 185 XXXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHGG 310
                + +      ++    K +         GR G  + GG
Sbjct: 162 VIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGG 203
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>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 5/145 (3%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRA-----CAFVTYTTXXXXXXXXXXXX 199
           +++GG+    +E DL   F A+G ++S ++++ RA       FVT+ T            
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFET-EQEAQRLQADG 93

Query: 200 NKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHGGLLPRAVIXXXXXXXXXXXXXXXX 379
             +V+   +L +     + P P        G V +    P  +                 
Sbjct: 94  ECVVLRDRKLNIAPAIKKQPNPLQSIVATNGAVYYTTTPPAPI---------SNIPMDQF 144

Query: 380 XXXVAPPGSGYFNIPPPPAVDQRMY 454
              V PP +G   I PP A+  + +
Sbjct: 145 AAAVYPPAAGVPAIYPPSAMQYQPF 169
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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV------IQRACAFVTY 157
           T++ +++GG+     E +LRD F  +G+IE+  ++       +R  AFVT+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV------IQRACAFVTY 157
           T++ +++GG+     E +LRD F  +G+IE+  ++       +R  AFVT+
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 23/85 (27%), Positives = 33/85 (38%)
 Frame = +2

Query: 2   SPPPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXX 181
           S PP    + T YIG +    +E DL   F   G I   +   ++ C F+ Y T      
Sbjct: 334 SAPP---RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAV 390

Query: 182 XXXXXXNKLVIXGVRLKLMWGKPQA 256
                 N     G  L+  WGK ++
Sbjct: 391 CIVALAN-FPFQGRNLRTGWGKERS 414
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>CWC2_LEPMC (Q6T412) Pre-mRNA-splicing factor CWC2|
          Length = 421

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
 Frame = +2

Query: 29  RTLYIGGLDXRVS-EQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNK 205
           RTLYIG +      E+ +   F   G+IE  R++  R  AFVTY              ++
Sbjct: 189 RTLYIGRIHVTDDIEEIVARHFQEWGQIERTRVLTARGVAFVTYMNEANSQFAKEAMAHQ 248

Query: 206 LVIXGVRLKLMWGKPQAPRPDDDXAGRQGH 295
            +     L + W       P+   A R+ H
Sbjct: 249 SLDHNEILNVRWATVD---PNPQAAKREAH 275
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>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV------IQRACAFVTY 157
           T++ +++GG+     E  LRD F  +G+IE+  ++       +R  AFVT+
Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTF 166
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>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGE------IESXRMVIQRACAFVTYTTXXXXXXXXXXX 196
           L++G +    +E+++R  F  HG       I+  R   Q+ C FV Y T           
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181

Query: 197 XNKLVIXG 220
            N++ + G
Sbjct: 182 HNQITLPG 189
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>YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C|
          Length = 612

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
 Frame = +2

Query: 29  RTLYIGGLDX--------RV-SEQDLRDQFYAHGEIESXRMVIQRACAFVTYT 160
           R +Y+G +D         RV +E +LR  F  +GE+E    + ++ C F+ YT
Sbjct: 522 RNVYVGNIDFVGDSLRDERVFTESNLRHIFQQYGEVEQINFLPEKNCCFINYT 574



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +2

Query: 17  DETIRTLYIG-----GLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTT 163
           D   R +YIG     G +  +SE+ LR     +GEI+  +++ ++  AF+ + +
Sbjct: 288 DGATRNVYIGRMTIEGEESHLSEEQLRVDLEEYGEIDCIKIIKEKGIAFIHFAS 341
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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDR 51
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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           T++ +++GG+     E  LRD F  +G+IE   ++       +R  AFVT+
Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDR 51
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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           T++ +++GG+     E  LRD F  +G+IE   ++       +R  AFVT+
Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
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>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R++E ++R  F  +G ++  +++  R
Sbjct: 37  TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR 71
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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T++ L++GG+     E  LRD F  +G+I++  ++  R
Sbjct: 98  TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR 135
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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T++ L++GG+     E  LRD F  +G+I++  ++  R
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR 147
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>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +2

Query: 14  DDETIRTLYIGGLDXRVSEQDLRDQFYAHGEI------ESXRMVIQRACAFVTYT 160
           + E +R L+IGGLD R ++++L+  F   G I      +  R    R   F+TY+
Sbjct: 26  EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYS 80



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTYTTXX 169
           P    T++ L++G L     EQ +RD F   G I    +VI      +R  AFV +    
Sbjct: 115 PNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYD 174

Query: 170 XXXXXXXXXXNKLVIXGVRLKLMWGKPQAPRPDDDXAGRQGHVSHGG 310
                     ++L       K++  K   P+ +D   G  G    GG
Sbjct: 175 PVDKVVLQKQHQL-----NGKMVDVKKALPKQNDQQGGGGGRGGPGG 216
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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
 Frame = +2

Query: 20  ETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           + ++ +++GGL+   +E+ +R+ F   GEIE+  + I      +R   F+T+
Sbjct: 156 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
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>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQ--RACAFVTYTT 163
           R++++G LD   + ++L  +F  HG+I+   ++ +     AF+ Y T
Sbjct: 346 RSIFVGQLDKETTREELNRRFSTHGKIQDINLIFKPTNIFAFIKYET 392
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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 8   PPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++R  F  +G ++  +++  R
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
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>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++R  F  +G ++  +++  R
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
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>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++R  F  +G ++  +++  R
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
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>CWC2_ASPFU (Q4WU07) Pre-mRNA-splicing factor cwc2|
          Length = 414

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAH-GEIESXRMVIQRACAFVTYT 160
           RTLY+G +      +++  + +A  G+I+  R++  R  AFVTYT
Sbjct: 192 RTLYVGRIHVTDDIEEVVSRHFAEWGQIDRIRVLTSRGVAFVTYT 236
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>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein|
           crp79) (Poly(A)-binding protein) (PABP) (Meiotic
           expression up-regulated protein 5)
          Length = 710

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 12/34 (35%), Positives = 25/34 (73%)
 Frame = +2

Query: 14  DDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIES 115
           +DE+  T+Y+G +D R+S++++   F  +G++ES
Sbjct: 13  EDES-STIYVGNIDSRLSDEEIIKHFSKYGQVES 45
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>YML7_YEAST (Q03735) Hypothetical 126.1 kDa protein in NDI1-ATR1 intergenic|
           region
          Length = 1134

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTX-XXXXXXXXXXXNK 205
           RT+YIG ++ R   +D+ +     G ++S + + ++   FVT+               + 
Sbjct: 653 RTIYIGNINPRSKAEDICN-VVRGGILQSIKYIPEKKICFVTFIEAPSAVQFYANSFIDP 711

Query: 206 LVIXGVRLKLMWGKPQAPRP 265
           +V+ G  L++ WG    P P
Sbjct: 712 IVLHGNMLRVGWGHYSGPLP 731
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>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++R  F  +G ++  +++  R
Sbjct: 41  TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR 75
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>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)|
          Length = 225

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +2

Query: 20  ETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           E ++ +++GGL     E+ +R+ F   GE+ES  + +      +R   F+T+
Sbjct: 169 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 220
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>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +2

Query: 20  ETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           E ++ +++GGL     E+ +R+ F   GE+ES  + +      +R   F+T+
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
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>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +2

Query: 20  ETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           E ++ +++GGL     E+ +R+ F   GE+ES  + +      +R   F+T+
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
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>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP|
           core protein C) (Fragment)
          Length = 158

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +2

Query: 20  ETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           E ++ +++GGL     E+ +R+ F   GE+ES  + +      +R   F+T+
Sbjct: 31  EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 82
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>CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2|
          Length = 580

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAH-GEIESXRMVIQRACAFVTYT 160
           RT+Y+G +      +++  + +A  G++E  R++ QR  AF+TYT
Sbjct: 167 RTVYVGRIHVTDDIEEVVARHFAEWGQVERIRVLNQRGVAFITYT 211
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>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +2

Query: 20  ETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           E ++ +++GGL     E+ +R+ F   GE+ES  + +      +R   F+T+
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
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>CWC2_EMENI (Q5BB35) Pre-mRNA-splicing factor cwc2|
          Length = 417

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAH-GEIESXRMVIQRACAFVTYT 160
           RTLY+G +      +++  + +A  G+I+  R++  R  AFVTYT
Sbjct: 197 RTLYVGRIHVTDDIEEVVARHFAEWGQIDRTRVLTSRGVAFVTYT 241
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>CWC2_SCHPO (P87126) Pre-mRNA-splicing factor cwc2 (Complexed with cdc5 protein|
           2) (Pre-mRNA-processing protein 3) (Cell cycle control
           protein cwf2)
          Length = 388

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAH-GEIESXRMVIQRACAFVTY 157
           TLY+GG+      +++  + +A  G+IE  R++  R  AF+TY
Sbjct: 175 TLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITY 217
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>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKLVI 214
           +YIG L  RVSE+D+   F  +G+I    ++++    FV +               K  +
Sbjct: 5   IYIGRLTSRVSEKDIEHFFRGYGQIRD--VLLKNGFGFVEFDDKRDAEDAVHDLNGK-EL 61

Query: 215 XGVRLKLMWGKPQAPRPDDDXAGRQG 292
            G R+ L + KP+    D    G  G
Sbjct: 62  GGERVILDYSKPRGGGGDRGGFGGGG 87
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>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +2

Query: 14  DDETIRTLYIGGLDXRVSEQDLRDQFYAHGEI------ESXRMVIQRACAFVTYT 160
           + E +R L+IGGLD R ++  L+  F   G I      +  +    R   F+TY+
Sbjct: 19  EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS 73
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>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 14  DDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV 127
           D +  RT++IG L   + E +L+  F   GEIE  R+V
Sbjct: 102 DTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIV 139
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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +2

Query: 11  PDDETIR--TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           P  E I+   LYI GL   ++++D+ D F   G I + R+++       R  AF+ +
Sbjct: 98  PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
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>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +2

Query: 11  PDDETIR--TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           P  E I+   LYI GL   ++++D+ D F   G I + R+++       R  AF+ +
Sbjct: 98  PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
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>CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2|
          Length = 480

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 65  SEQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXXXXXNKLVIXGVRLKLMWG 244
           +E+ +R  F   GEI+  R++  R+CAFVT+              N+ +     + + W 
Sbjct: 256 TERVVRRHFSEWGEIDRLRVLTGRSCAFVTFKYEANAQFAKEAMLNQSLDHNEIINVRWA 315

Query: 245 ----KPQAPRPDDDXAGRQG 292
                P A + + +   R G
Sbjct: 316 SDDPNPAAQKRNQEQMRRAG 335
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>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFV 151
           LYIG L   V+E++L++ F  +GEI    +  ++  AF+
Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFL 153
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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRM 124
           +Y+G L   V E+DL D FY +G I    +
Sbjct: 17  IYVGNLPSDVREKDLEDLFYKYGRIREIEL 46
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>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTY 157
           RT+Y+GGL   V+E+ L + F   G+I   +M         R  AF+ Y
Sbjct: 6   RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEY 54
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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRM 124
           +Y+G L   V E+DL D FY +G I    +
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIEL 45
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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRM 124
           +Y+G L   V E+DL D FY +G I    +
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIEL 45
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>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +2

Query: 23  TIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMV------IQRACAFVTY 157
           T++ +++GG+     E  LRD   ++G+IE+  ++       +R  AFVT+
Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTF 166
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>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1|
          Length = 620

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 8   PPDDETI--RTLYIGGLDXRVSEQDLRDQFYAHGEIES 115
           PPD   +  RTL++GG+   V E  LR  F   G ++S
Sbjct: 397 PPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQS 434
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>NRD1_YEAST (P53617) Protein NRD1|
          Length = 575

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 8   PPDDETI--RTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFV 151
           PPD   +  RTL+IGG+   + E DL +      E++S  +   R  AFV
Sbjct: 330 PPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEVQSVILNNSRKHAFV 379
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>CWC2_KLULA (Q6CT50) Pre-mRNA-splicing factor CWC2|
          Length = 337

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
 Frame = +2

Query: 29  RTLYIGGLDXRVSEQDLRD---------QFYAHGEIESXRMVIQRACAFVTY 157
           R LY+GG+   ++ + L+          +F   GE++S R V  + CAFV +
Sbjct: 136 RVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSVRYVESKNCAFVKF 187
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>MEOX1_HUMAN (P50221) Homeobox protein MOX-1 (Mesenchyme homeobox 1)|
          Length = 254

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
 Frame = -3

Query: 309 PPWETWPCLPAXSSSGLGAWGLPH-----MSFRRTP 217
           PP   W CL    S G GA GLPH      SF + P
Sbjct: 14  PPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKP 49
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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 20  ETIRTLYIGGLDXRVSEQDLRDQFYAHGEI 109
           ++ RTL+IG L+  ++  +LR  F A GEI
Sbjct: 653 KSTRTLFIGNLEKDITAGELRSHFEAFGEI 682
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>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFV 151
           L++ G+    +E+D+ D+F  +GEI++  + + R   ++
Sbjct: 75  LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL 113
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>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACAFV 151
           L++ G+    +E+D+ D+F  +GEI++  + + R   ++
Sbjct: 75  LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL 113
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>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 17  DETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           D T   +++GGL    ++  LR  F   G+IE   ++  R
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 46
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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRACA 145
           T+Y+GGLD +VSE  L +     G + S  M   R  A
Sbjct: 14  TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTA 51
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>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++   F  +G ++  +++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 17  DETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           D T   +++GGL    ++  LR  F   G+IE   ++  R
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 67
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>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++   F  +G ++  +++  R
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 405



 Score = 29.3 bits (64), Expect = 5.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++   F  +G ++  +++  R
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 240



 Score = 29.3 bits (64), Expect = 5.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++   F  +G ++  +++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++   F  +G ++  +++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVI------QRACAFVTYTTXXXXXXXXXXX 196
           L+IGGL     +  LRD F   G++   ++++       R   FV +             
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 197 XNK-LVIXGVRLKLMWGKPQAPRPDDDXAGRQG 292
             K L    +R+     +P APR      G  G
Sbjct: 97  DGKELNGRHIRVNPANDRPSAPRAYGGGGGYSG 129
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>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++   F  +G ++  +++  R
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 240



 Score = 29.3 bits (64), Expect = 5.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 32  TLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           T+++GG+D R+ E ++   F  +G ++  +++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed with CEF1 protein|
           2) (PRP19-associated complex protein 40) (Synthetic
           lethal with CLF1 protein 3)
          Length = 339

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
 Frame = +2

Query: 29  RTLYIGGLDXRVS---------EQDLRDQFYAHGEIESXRMVIQRACAFVTY 157
           +TLY+GG+D  ++         E  +R  F   G+I+  R V  + C FV +
Sbjct: 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKF 186
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>CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2|
          Length = 382

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +2

Query: 29  RTLYIGGLDXRVS------EQDLRDQFYAHGEIESXRMVIQRACAFVTYTTXXXXXXXXX 190
           RTLY+G +    +      ++ +   F   G+++  R++  +  AFVTY T         
Sbjct: 186 RTLYVGRIHVSDAAKAGALDEIVSRHFSEWGDVDRIRVLHDKGVAFVTYATEVNAQFAKE 245

Query: 191 XXXNKLVIXGVRLKLMWGKPQAPRP 265
              ++ +  G  L + W   Q P P
Sbjct: 246 AMAHQSLDSGEVLNVRWA-TQDPDP 269
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>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMV------IQRACAFVTYT 160
           L++GGL+    EQ L D F + G I    +V        R   F+T+T
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFT 55
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>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMV------IQRACAFVTYT 160
           L++GGL+    EQ L D F + G I    +V        R   F+T+T
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFT 55
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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQ-----RACAFVTY 157
           +YI  LD  ++EQ+  D F   GEI S  +V       R   FV Y
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308
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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 5   PPPDDETIRTLYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQR 136
           PP   E    +Y+G +   + +  L   F  HG++ S R+V  R
Sbjct: 222 PPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDR 265
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>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
 Frame = +2

Query: 35  LYIGGLDXRVSEQDLRDQFYAHGEIESXRMVIQRAC-----AFVTYTTXXXXXXXXXXXX 199
           L+IGGL+   +E+ L+  F  HG I    ++  R       AF+T+              
Sbjct: 10  LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69

Query: 200 NKLVIXGVRLKLMWGKPQAPRPDDDXAGRQ 289
            K  + G  +K+     QA +P     GR+
Sbjct: 70  GK-SLHGKAIKV----EQAKKPSFQSGGRR 94
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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 404 SGYFNIPPPPAVDQRMYPSMDPQ 472
           SG  ++PPPPAV  RMYP   P+
Sbjct: 430 SGETSVPPPPAVG-RMYPPRSPK 451


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,573,221
Number of Sequences: 219361
Number of extensions: 1284385
Number of successful extensions: 3536
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 3290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3514
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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