Clone Name | bart06b05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1461 Score = 357 bits (180), Expect = 2e-95 Identities = 328/379 (86%) Strand = Plus / Plus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||| Sbjct: 659 cacccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtca 718 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 ||||||||||||||||||||| |||||||| ||||||||||| || || | || |||| Sbjct: 719 ctgagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatgg 778 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 779 ttctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctg 838 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 |||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct: 839 cagaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgtggggca 898 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| || || || || | |||||||||||||| |||||| | |||| Sbjct: 899 agcctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatg 958 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | |||||||||||||| |||||||| |||||||| | ||||||||||| || | Sbjct: 959 gaggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctc 1018 Query: 366 ctgggatggagggacagca 384 |||||||||| || ||||| Sbjct: 1019 ctgggatggaaggccagca 1037
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 357 bits (180), Expect = 2e-95 Identities = 328/379 (86%) Strand = Plus / Minus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||| Sbjct: 10711825 cacccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtca 10711766 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 ||||||||||||||||||||| |||||||| ||||||||||| || || | || |||| Sbjct: 10711765 ctgagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatgg 10711706 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 10711705 ttctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctg 10711646 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 |||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct: 10711645 cagaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgtggggca 10711586 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| || || || || | |||||||||||||| |||||| | |||| Sbjct: 10711585 agcctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatg 10711526 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | |||||||||||||| |||||||| |||||||| | ||||||||||| || | Sbjct: 10711525 gaggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctc 10711466 Query: 366 ctgggatggagggacagca 384 |||||||||| || ||||| Sbjct: 10711465 ctgggatggaaggccagca 10711447
>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0557D09 Length = 135315 Score = 357 bits (180), Expect = 2e-95 Identities = 328/379 (86%) Strand = Plus / Minus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||| Sbjct: 41271 cacccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtca 41212 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 ||||||||||||||||||||| |||||||| ||||||||||| || || | || |||| Sbjct: 41211 ctgagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatgg 41152 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 41151 ttctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctg 41092 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 |||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct: 41091 cagaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgtggggca 41032 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| || || || || | |||||||||||||| |||||| | |||| Sbjct: 41031 agcctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatg 40972 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | |||||||||||||| |||||||| |||||||| | ||||||||||| || | Sbjct: 40971 gaggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctc 40912 Query: 366 ctgggatggagggacagca 384 |||||||||| || ||||| Sbjct: 40911 ctgggatggaaggccagca 40893
>ref|XM_493940.1| Oryza sativa (japonica cultivar-group), Ozsa8005 predicted mRNA Length = 1449 Score = 347 bits (175), Expect = 2e-92 Identities = 363/427 (85%), Gaps = 3/427 (0%) Strand = Plus / Plus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||| ||| Sbjct: 659 cacctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatca 718 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 |||||||||||||||||||| ||||| ||||||||||| || || ||| | ||||||| Sbjct: 719 ccgagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatgg 778 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | || ||||| |||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 779 ttctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctg 838 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 ||||||||||||| |||||| ||||||||| |||| | |||||||||||||||||||| | Sbjct: 839 cagaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggta 898 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| |||||| || || | ||||| |||||||| |||||| | |||| Sbjct: 899 agcctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatg 958 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | ||||| ||||||||||||||||| |||||||| | ||||||||||| |||| Sbjct: 959 gaggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccac 1018 Query: 366 ctgggatggagggacagcaacaagtggcaccaccaggatcaggctacttcaacattccnc 425 |||| ||||||||||| || ||| |||||| | |||||| ||||||||||||||| Sbjct: 1019 ctggaatggagggacaacagcaa---gcaccatcgggatcatactacttcaacattccag 1075 Query: 426 caccgcc 432 ||||||| Sbjct: 1076 caccgcc 1082 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 450 tgtacccttcaatggacccccagagaatggg 480 |||||||||||||||| |||||||| ||||| Sbjct: 1100 tgtacccttcaatggatccccagaggatggg 1130
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 347 bits (175), Expect = 2e-92 Identities = 363/427 (85%), Gaps = 3/427 (0%) Strand = Plus / Minus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||| ||| Sbjct: 3536997 cacctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatca 3536938 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 |||||||||||||||||||| ||||| ||||||||||| || || ||| | ||||||| Sbjct: 3536937 ccgagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatgg 3536878 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | || ||||| |||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 3536877 ttctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctg 3536818 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 ||||||||||||| |||||| ||||||||| |||| | |||||||||||||||||||| | Sbjct: 3536817 cagaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggta 3536758 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| |||||| || || | ||||| |||||||| |||||| | |||| Sbjct: 3536757 agcctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatg 3536698 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | ||||| ||||||||||||||||| |||||||| | ||||||||||| |||| Sbjct: 3536697 gaggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccac 3536638 Query: 366 ctgggatggagggacagcaacaagtggcaccaccaggatcaggctacttcaacattccnc 425 |||| ||||||||||| || ||| |||||| | |||||| ||||||||||||||| Sbjct: 3536637 ctggaatggagggacaacagcaa---gcaccatcgggatcatactacttcaacattccag 3536581 Query: 426 caccgcc 432 ||||||| Sbjct: 3536580 caccgcc 3536574 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 450 tgtacccttcaatggacccccagagaatggg 480 |||||||||||||||| |||||||| ||||| Sbjct: 3536556 tgtacccttcaatggatccccagaggatggg 3536526
>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0675A05 Length = 131972 Score = 347 bits (175), Expect = 2e-92 Identities = 363/427 (85%), Gaps = 3/427 (0%) Strand = Plus / Minus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||| ||| Sbjct: 28834 cacctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatca 28775 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 |||||||||||||||||||| ||||| ||||||||||| || || ||| | ||||||| Sbjct: 28774 ccgagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatgg 28715 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | || ||||| |||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 28714 ttctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctg 28655 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 ||||||||||||| |||||| ||||||||| |||| | |||||||||||||||||||| | Sbjct: 28654 cagaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggta 28595 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| |||||| || || | ||||| |||||||| |||||| | |||| Sbjct: 28594 agcctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatg 28535 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | ||||| ||||||||||||||||| |||||||| | ||||||||||| |||| Sbjct: 28534 gaggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccac 28475 Query: 366 ctgggatggagggacagcaacaagtggcaccaccaggatcaggctacttcaacattccnc 425 |||| ||||||||||| || ||| |||||| | |||||| ||||||||||||||| Sbjct: 28474 ctggaatggagggacaacagcaa---gcaccatcgggatcatactacttcaacattccag 28418 Query: 426 caccgcc 432 ||||||| Sbjct: 28417 caccgcc 28411 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 450 tgtacccttcaatggacccccagagaatggg 480 |||||||||||||||| |||||||| ||||| Sbjct: 28393 tgtacccttcaatggatccccagaggatggg 28363
>dbj|AK120360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067M02, full insert sequence Length = 2047 Score = 347 bits (175), Expect = 2e-92 Identities = 363/427 (85%), Gaps = 3/427 (0%) Strand = Plus / Plus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||| ||| Sbjct: 725 cacctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatca 784 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 |||||||||||||||||||| ||||| ||||||||||| || || ||| | ||||||| Sbjct: 785 ccgagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatgg 844 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | || ||||| |||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 845 ttctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctg 904 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 ||||||||||||| |||||| ||||||||| |||| | |||||||||||||||||||| | Sbjct: 905 cagaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggta 964 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| |||||| || || | ||||| |||||||| |||||| | |||| Sbjct: 965 agcctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatg 1024 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | ||||| ||||||||||||||||| |||||||| | ||||||||||| |||| Sbjct: 1025 gaggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccac 1084 Query: 366 ctgggatggagggacagcaacaagtggcaccaccaggatcaggctacttcaacattccnc 425 |||| ||||||||||| || ||| |||||| | |||||| ||||||||||||||| Sbjct: 1085 ctggaatggagggacaacagcaa---gcaccatcgggatcatactacttcaacattccag 1141 Query: 426 caccgcc 432 ||||||| Sbjct: 1142 caccgcc 1148 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 450 tgtacccttcaatggacccccagagaatggg 480 |||||||||||||||| |||||||| ||||| Sbjct: 1166 tgtacccttcaatggatccccagaggatggg 1196
>dbj|AK111997.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D10, full insert sequence Length = 1637 Score = 347 bits (175), Expect = 2e-92 Identities = 363/427 (85%), Gaps = 3/427 (0%) Strand = Plus / Plus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||| ||| Sbjct: 433 cacctccagacgatgagagtataaggacactttacattggtggccttaataatcgaatca 492 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 |||||||||||||||||||| ||||| ||||||||||| || || ||| | ||||||| Sbjct: 493 ccgagcaggatttgagggatcaattttacgcacatggtgaaattgagtccataaggatgg 552 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | || ||||| |||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 553 ttctgcaacgtgcctgtgcatttgtgacgtacactacaagagaaggtgctgagaaagctg 612 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 ||||||||||||| |||||| ||||||||| |||| | |||||||||||||||||||| | Sbjct: 613 cagaggagcttgccaacaagttagtcatcaagggtatacgcctgaagctcatgtggggta 672 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| |||||| || || | ||||| |||||||| |||||| | |||| Sbjct: 673 agcctcaagcaccaaagccagaagacgatgaagctggaaggcaagggcatgttgcacatg 732 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | ||||| ||||||||||||||||| |||||||| | ||||||||||| |||| Sbjct: 733 gaggaatgctccccagggctgttatatctcagcagcagagtggtgaccagcctcaaccac 792 Query: 366 ctgggatggagggacagcaacaagtggcaccaccaggatcaggctacttcaacattccnc 425 |||| ||||||||||| || ||| |||||| | |||||| ||||||||||||||| Sbjct: 793 ctggaatggagggacaacagcaa---gcaccatcgggatcatactacttcaacattccag 849 Query: 426 caccgcc 432 ||||||| Sbjct: 850 caccgcc 856 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 450 tgtacccttcaatggacccccagagaatggg 480 |||||||||||||||| |||||||| ||||| Sbjct: 874 tgtacccttcaatggatccccagaggatggg 904
>dbj|AK111689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003O14, full insert sequence Length = 1661 Score = 341 bits (172), Expect = 1e-90 Identities = 327/379 (86%), Gaps = 1/379 (0%) Strand = Plus / Plus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||| ||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||| Sbjct: 732 cacccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtca 791 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 ||||||||||||||||||||| |||||||| ||||||||||| || || | || |||| Sbjct: 792 ctgagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatgg 851 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 | | ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 852 ttctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctg 911 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 |||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 912 cagaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgt-gggca 970 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| ||||| |||| || || || || | |||||||||||||| |||||| | |||| Sbjct: 971 agcctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatg 1030 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 ||||| | |||||||||||||| |||||||| |||||||| | ||||||||||| || | Sbjct: 1031 gaggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctc 1090 Query: 366 ctgggatggagggacagca 384 |||||||||| || ||||| Sbjct: 1091 ctgggatggaaggccagca 1109
>gb|AY104700.1| Zea mays PCO101905 mRNA sequence Length = 1777 Score = 307 bits (155), Expect = 2e-80 Identities = 351/418 (83%) Strand = Plus / Plus Query: 6 caccaccagatgatgagactattaggacactctacattggtggacttgatnaccgagtca 65 |||||||||||||||||||||| ||||| ||||||||||| ||||| ||| | || | | Sbjct: 785 caccaccagatgatgagactataaggaccctctacattggcggactcgatagcagaataa 844 Query: 66 gtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatgg 125 ||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||| Sbjct: 845 ccgagcaggatttgagggatcagttttatgcccatggtgagatcgagtccataaggatgg 904 Query: 126 taatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctg 185 || | || ||||| |||||||||||||| || ||||||||||| || |||| |||| Sbjct: 905 tacttcaacgtgcaatcgcatttgtgacgtatactacaagagaaggcgcagagaaggctg 964 Query: 186 cagaggagcttgctaacaagctagtcatcangggtgtgcgcctgaagctcatgtggggca 245 |||| ||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||| Sbjct: 965 cagaagagcttgctaataagctagtcatcaagggcgtgcgcctgaagctgatgtggggca 1024 Query: 246 agccccaagccccaaggccagatgatgacnaggctgggaggcaaggccatgtttcccatg 305 |||| || ||||||| ||| || || || || ||||||||| || || |||||||| | Sbjct: 1025 agcctcaggccccaaagcctgaggaggatgagtctgggaggctggggcaggtttcccacg 1084 Query: 306 gaggattactccctagggctgttatatctcancagcagagcagcgaccagcctcagccac 365 |||| | |||||||||||||| |||||||| ||||||||| | |||||||||||||| | Sbjct: 1085 gagggctgctccctagggctgtcatatctcagcagcagagcggtgaccagcctcagcccc 1144 Query: 366 ctgggatggagggacagcaacaagtggcaccaccaggatcaggctacttcaacattcc 423 | ||||||||||| || || ||| ||| |||||| ||| ||||||||||||||| Sbjct: 1145 ccgggatggagggccaacagcaacaggctgcaccagcatcgtactacttcaacattcc 1202
>gb|DQ268862.1| Solanum tuberosum clone 183E08 RRM-containing RNA-binding protein-like protein mRNA, complete cds Length = 1679 Score = 73.8 bits (37), Expect = 5e-10 Identities = 93/112 (83%) Strand = Plus / Plus Query: 63 tcagtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcagga 122 ||||||||||||| | ||||| ||||||||||||||||| || ||||| ||| | | | Sbjct: 799 tcagtgagcaggacctaagggaccagttttatgcacatggagaaatcgagtccattaaaa 858 Query: 123 tggtaatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgc 174 |||| | ||||||| |||||| ||||| || ||||| |||||||||||||| Sbjct: 859 tggtgttgcagcgtggttgtgcttttgtaacctacactacaagagaaggtgc 910
>gb|DQ294268.1| Solanum tuberosum clone 138G04 RRM-containing RNA-binding protein-like protein mRNA, complete cds Length = 1747 Score = 65.9 bits (33), Expect = 1e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 63 tcagtgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcagga 122 ||||||||||||| | ||||| |||||||| |||||||| || ||||| ||| | | | Sbjct: 820 tcagtgagcaggacctaagggaccagttttacgcacatggagaaatcgagtccattaaaa 879 Query: 123 tggtaatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgc 174 |||| | ||||||| |||||| ||||| || ||||| |||||||||||||| Sbjct: 880 tggtgttgcagcgtggttgtgcttttgtaacctacactacaagagaaggtgc 931
>gb|BT014496.1| Lycopersicon esculentum clone 133866F, mRNA sequence Length = 1903 Score = 60.0 bits (30), Expect = 7e-06 Identities = 113/141 (80%) Strand = Plus / Plus Query: 67 tgagcaggatttgagggatcagttttatgcacatggtgagatcgaatccntcaggatggt 126 ||||||||| | ||||| || ||||||||||||||||| || || ||| | | ||||| Sbjct: 911 tgagcaggaccttagggaccatttttatgcacatggtgaaattgagtccattaaaatggt 970 Query: 127 aatccagcgtgcttgtgcatttgtgacgtacacaacaagagaaggtgctgagagagctgc 186 ||||||||| |||||| ||||| || ||||| || ||||||||||| | || || || Sbjct: 971 ggtccagcgtggttgtgcttttgtaacttacacgactagagaaggtgcggtgaaggcagc 1030 Query: 187 agaggagcttgctaacaagct 207 ||||| ||||| |||||||| Sbjct: 1031 tgaggaacttgcaaacaagct 1051
>ref|XM_385593.1| Gibberella zeae PH-1 chromosome 3 conserved hypothetical protein (FG05417.1) partial mRNA Length = 1422 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 cactctacattggtggacttga 54 |||||||||||||||||||||| Sbjct: 248 cactctacattggtggacttga 269
>gb|AC008676.6| Homo sapiens chromosome 5 clone CTB-47B11, complete sequence Length = 208065 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 163 aagagaaggtgctgagagagct 184 |||||||||||||||||||||| Sbjct: 64916 aagagaaggtgctgagagagct 64937
>ref|NM_128511.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT2G29580 mRNA, complete cds Length = 1718 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1160 tacccatcaatggaccctcagagaatggg 1188
>ref|NM_100610.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G07360 mRNA, complete cds Length = 1671 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1106 tacccatcaatggacccacagagaatggg 1134
>gb|AC146743.11| Medicago truncatula clone mth2-12k22, complete sequence Length = 116419 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 |||||||||||||| ||||| |||||||| Sbjct: 101375 tacccttcaatggatccccaaagaatggg 101403
>gb|AY114632.1| Arabidopsis thaliana unknown protein (At1g07360) mRNA, complete cds Length = 1489 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1054 tacccatcaatggacccacagagaatggg 1082
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence Length = 131743 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 5960 tacccatcaatggaccctcagagaatggg 5932
>gb|AF428354.1|AF428354 Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds Length = 1718 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1160 tacccatcaatggaccctcagagaatggg 1188
>gb|AY054519.1| Arabidopsis thaliana Unknown protein (At1g07360; F22G5.30) mRNA, complete cds Length = 1670 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1106 tacccatcaatggacccacagagaatggg 1134
>emb|BX814764.1|CNS0ADP0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB93ZC03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1097 tacccatcaatggacccacagagaatggg 1125
>emb|BX813529.1|CNS0ADSU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB22ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1091 tacccatcaatggacccacagagaatggg 1119
>emb|BX817119.1|CNS0AD2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZC09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1581 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1063 tacccatcaatggacccacagagaatggg 1091
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence Length = 104830 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 83106 tacccatcaatggacccacagagaatggg 83134
>gb|BT002621.1| Arabidopsis thaliana At2g29580/F16P2.4 gene, complete cds Length = 1452 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 tacccttcaatggacccccagagaatggg 480 ||||| ||||||||||| ||||||||||| Sbjct: 1072 tacccatcaatggaccctcagagaatggg 1100
>gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, complete sequence Length = 213939 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 gggcaagccccaagccccaag 261 ||||||||||||||||||||| Sbjct: 149712 gggcaagccccaagccccaag 149732
>ref|XM_636831.1| Dictyostelium discoideum hypothetical protein (DDB0206175), partial mRNA Length = 5382 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tctccaccaccagatgatga 21 |||||||||||||||||||| Sbjct: 47 tctccaccaccagatgatga 28
>ref|XM_513800.1| PREDICTED: Pan troglodytes LOC457298 (LOC457298), mRNA Length = 3063 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 agagagctgcagaggagcttgcta 200 ||||||||||||||| |||||||| Sbjct: 2578 agagagctgcagaggcgcttgcta 2601
>gb|AC166370.3| Mus musculus BAC clone RP23-20I24 from chromosome 9, complete sequence Length = 242229 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cagcctcagccacctgggat 372 |||||||||||||||||||| Sbjct: 224865 cagcctcagccacctgggat 224884
>gb|AC155074.12| Mus musculus chromosome 15, clone RP24-127H11, complete sequence Length = 184795 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 caagccccaaggccagatga 270 |||||||||||||||||||| Sbjct: 106254 caagccccaaggccagatga 106273
>gb|AC132371.2| Mus musculus BAC clone RP23-477D20 from chromosome 5, complete sequence Length = 193291 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 aagagaaggtgctgagagag 182 |||||||||||||||||||| Sbjct: 95422 aagagaaggtgctgagagag 95441
>ref|XM_568981.1| Cryptococcus neoformans var. neoformans JEC21 cytoplasm protein (CNB04890) partial mRNA Length = 3730 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 tgagcaggatttgagggatcagtt 90 |||||||||||||||| ||||||| Sbjct: 1678 tgagcaggatttgaggaatcagtt 1701
>gb|AC107755.12| Mus musculus chromosome 9, clone RP23-225C11, complete sequence Length = 178844 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cagcctcagccacctgggat 372 |||||||||||||||||||| Sbjct: 29900 cagcctcagccacctgggat 29919
>emb|CR956383.8| Pig DNA sequence from clone CH242-271L5 on chromosome 17, complete sequence Length = 163007 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cagcctcagccacctgggat 372 |||||||||||||||||||| Sbjct: 33713 cagcctcagccacctgggat 33732
>emb|AL031667.21|HS620E11 Human DNA sequence from clone RP4-620E11 on chromosome 20q11.2-12 Contains the 3' end of the LPIN3 gene for lipin 3, the C20orf130 gene, a novel pseudogene, the 3' end of the CHD6 gene for chromodomain helicase DNA binding protein 6, a lymphocyte antigen 6 complex locus H (LY6H) pseudogene and a CpG island, complete sequence Length = 142520 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ggggcaagccccaagcccca 259 |||||||||||||||||||| Sbjct: 5892 ggggcaagccccaagcccca 5873
>gb|AC104024.8| Homo sapiens chromosome 17, clone RP11-416I2, complete sequence Length = 97645 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ctgagagagctgcagaggag 193 |||||||||||||||||||| Sbjct: 2926 ctgagagagctgcagaggag 2945
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 tgagcaggatttgagggatcagtt 90 |||||||||||||||| ||||||| Sbjct: 1392647 tgagcaggatttgaggaatcagtt 1392670
>gb|AC079111.7| Homo sapiens chromosome 17, clone RP11-367G9, complete sequence Length = 163410 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ctgagagagctgcagaggag 193 |||||||||||||||||||| Sbjct: 30463 ctgagagagctgcagaggag 30444
>gb|AC171138.2| Helobdella robusta clone CH306-1A9, complete sequence Length = 97729 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gagggacagcaacaagtggc 393 |||||||||||||||||||| Sbjct: 91737 gagggacagcaacaagtggc 91756
>ref|NM_135788.2| Drosophila melanogaster CG6116-RA (CG6116), mRNA Length = 2512 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgacgtacacaacaagagaa 169 |||||||||||||||||||| Sbjct: 1697 tgacgtacacaacaagagaa 1716
>ref|XM_692965.1| PREDICTED: Danio rerio similar to Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (LOC569568), mRNA Length = 2328 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gtgctgagagagctgcagag 190 |||||||||||||||||||| Sbjct: 1458 gtgctgagagagctgcagag 1439
>gb|AY069353.1| Drosophila melanogaster LD05963 full length cDNA Length = 2506 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgacgtacacaacaagagaa 169 |||||||||||||||||||| Sbjct: 1674 tgacgtacacaacaagagaa 1693
>gb|AC160341.2| Mus musculus BAC clone RP24-226P13 from chromosome 9, complete sequence Length = 139613 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 cagcctcagccacctgggat 372 |||||||||||||||||||| Sbjct: 13980 cagcctcagccacctgggat 13961
>gb|AC148706.1| Macaca mulatta Major Histocompatibility Complex BAC MMU370O02, complete sequence Length = 181896 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gcttgtgcatttgtgacgta 156 |||||||||||||||||||| Sbjct: 166018 gcttgtgcatttgtgacgta 166037
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctctccaccaccagatgatgagac 24 |||||| ||||||||||||||||| Sbjct: 13659258 ctctcctccaccagatgatgagac 13659281
>gb|AC009376.7| Drosophila melanogaster 3 BAC RPCI98-1D4 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 183948 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ggcaagccccaagccccaag 261 |||||||||||||||||||| Sbjct: 100063 ggcaagccccaagccccaag 100044
>gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69 of 83 of the complete sequence Length = 305312 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ggcaagccccaagccccaag 261 |||||||||||||||||||| Sbjct: 71491 ggcaagccccaagccccaag 71510
>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09, complete sequence Length = 187359 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctctccaccaccagatgatgagac 24 |||||| ||||||||||||||||| Sbjct: 53866 ctctcctccaccagatgatgagac 53889 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,431,388 Number of Sequences: 3902068 Number of extensions: 3431388 Number of successful extensions: 67900 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67662 Number of HSP's gapped (non-prelim): 219 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)