ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 i... 35 0.054
2SSM1_YEAST (P53078) Protein SSM1 34 0.12
3YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I 33 0.27
4LFTR_XANCP (Q8P996) Leucyl/phenylalanyl-tRNA--protein transferas... 28 8.6

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
 Frame = +1

Query: 52  DLDDTLYPGNTGXGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIALGHD 231
           D+D+TLY  +T     +++++  F                      +G ++ GLI     
Sbjct: 58  DIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQI 117

Query: 232 VHPDQYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLE 387
               QY++++   LP  D +  D +L   L ++ ++K+       LFTNS + H  R ++
Sbjct: 118 DDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVK 177

Query: 388 RLGL 399
            LG+
Sbjct: 178 ILGI 181



to top

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 6/134 (4%)
 Frame = +1

Query: 16  SPVTSPFDCLLIDLDDTLYPGNTGXGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHG 195
           +P          D+D+ LY  +T     ++++I  F                      +G
Sbjct: 49  TPQNPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYG 108

Query: 196 STLAGLIALGHDVHPDQYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNS 357
             + GL+   H V+  +Y+  V   LP  D++  D  L   L  + Q  KI    LFTN+
Sbjct: 109 LAIRGLVMF-HKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNA 167

Query: 358 DRAHMRRSLERLGL 399
            + H  R L  LG+
Sbjct: 168 YKNHAIRCLRLLGI 181



to top

>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 3/124 (2%)
 Frame = +1

Query: 43  LLIDLDDTLYPGNTGXGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIAL 222
           +  DLD+ LYP +      +   I  F                      +G  + GL+ L
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGLV-L 66

Query: 223 GHDVHPDQYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSLERL 393
            H++    Y   V   LP + VI  D  L   L  + ++    +FTN+   H  R L+ L
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126

Query: 394 GLDE 405
           G+++
Sbjct: 127 GIED 130



to top

>LFTR_XANCP (Q8P996) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)|
           (L/F-transferase) (Leucyltransferase)
           (Phenyalanyltransferase)
          Length = 249

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 208 GLIALGHDVHPDQ-YHSYVHGRLPY 279
           GL+A+G D+HP +  ++Y HG  P+
Sbjct: 29  GLLAIGGDLHPQRLLNAYAHGIFPW 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,131,661
Number of Sequences: 219361
Number of extensions: 464515
Number of successful extensions: 2406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2406
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top