Clone Name | bart06a09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 i... | 35 | 0.054 | 2 | SSM1_YEAST (P53078) Protein SSM1 | 34 | 0.12 | 3 | YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I | 33 | 0.27 | 4 | LFTR_XANCP (Q8P996) Leucyl/phenylalanyl-tRNA--protein transferas... | 28 | 8.6 |
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>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic| region Length = 321 Score = 35.4 bits (80), Expect = 0.054 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 8/124 (6%) Frame = +1 Query: 52 DLDDTLYPGNTGXGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIALGHD 231 D+D+TLY +T +++++ F +G ++ GLI Sbjct: 58 DIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQI 117 Query: 232 VHPDQYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLE 387 QY++++ LP D + D +L L ++ ++K+ LFTNS + H R ++ Sbjct: 118 DDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVK 177 Query: 388 RLGL 399 LG+ Sbjct: 178 ILGI 181
>SSM1_YEAST (P53078) Protein SSM1| Length = 280 Score = 34.3 bits (77), Expect = 0.12 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 6/134 (4%) Frame = +1 Query: 16 SPVTSPFDCLLIDLDDTLYPGNTGXGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHG 195 +P D+D+ LY +T ++++I F +G Sbjct: 49 TPQNPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYG 108 Query: 196 STLAGLIALGHDVHPDQYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNS 357 + GL+ H V+ +Y+ V LP D++ D L L + Q KI LFTN+ Sbjct: 109 LAIRGLVMF-HKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNA 167 Query: 358 DRAHMRRSLERLGL 399 + H R L LG+ Sbjct: 168 YKNHAIRCLRLLGI 181
>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I| Length = 226 Score = 33.1 bits (74), Expect = 0.27 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Frame = +1 Query: 43 LLIDLDDTLYPGNTGXGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIAL 222 + DLD+ LYP + + I F +G + GL+ L Sbjct: 8 IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGLV-L 66 Query: 223 GHDVHPDQYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSLERL 393 H++ Y V LP + VI D L L + ++ +FTN+ H R L+ L Sbjct: 67 HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126 Query: 394 GLDE 405 G+++ Sbjct: 127 GIED 130
>LFTR_XANCP (Q8P996) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 249 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +1 Query: 208 GLIALGHDVHPDQ-YHSYVHGRLPY 279 GL+A+G D+HP + ++Y HG P+ Sbjct: 29 GLLAIGGDLHPQRLLNAYAHGIFPW 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,131,661 Number of Sequences: 219361 Number of extensions: 464515 Number of successful extensions: 2406 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2398 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2406 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)