ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
2dbj|AB004813.1| Oryza sativa (japonica cultivar-group) AOX1b and... 42 1.5
3emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
4gb|AC011614.8| Drosophila melanogaster, chromosome X, region 16F... 40 6.1
5gb|AE003508.4| Drosophila melanogaster chromosome X, section 60 ... 40 6.1

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 53       gcanctagaaacatctgggatcttgctt 80
                ||| ||||||||||||||||| ||||||
Sbjct: 30324567 gcagctagaaacatctgggatgttgctt 30324594



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>dbj|AB004813.1| Oryza sativa (japonica cultivar-group) AOX1b and AOX1a genes,
            complete cds
          Length = 7421

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 53   gcanctagaaacatctgggatcttgctt 80
            ||| ||||||||||||||||| ||||||
Sbjct: 3722 gcagctagaaacatctgggatgttgctt 3695



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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 53    gcanctagaaacatctgggatcttgctt 80
             ||| ||||||||||||||||| ||||||
Sbjct: 74463 gcagctagaaacatctgggatgttgctt 74490



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>gb|AC011614.8| Drosophila melanogaster, chromosome X, region 16F-17A, BAC clone
             BACR48L05, complete sequence
          Length = 177138

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   tcaatggagccatcctggag 277
             ||||||||||||||||||||
Sbjct: 68980 tcaatggagccatcctggag 68999



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>gb|AE003508.4| Drosophila melanogaster chromosome X, section 60 of 74 of the complete
             sequence
          Length = 290619

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   tcaatggagccatcctggag 277
             ||||||||||||||||||||
Sbjct: 17111 tcaatggagccatcctggag 17092


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,320,736
Number of Sequences: 3902068
Number of extensions: 2320736
Number of successful extensions: 34028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34017
Number of HSP's gapped (non-prelim): 11
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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