ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27p20 |
|---|---|
| Clone Library Name | barley_pub |
>RS9_PIG (Q29197) 40S ribosomal protein S9 (Fragment)| Length = 130 Score = 68.2 bits (165), Expect = 6e-12 Identities = 31/45 (68%), Positives = 39/45 (86%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL+GEY LR KRE+WRV++ L++IR AAR LLTL EK+PRR+FE Sbjct: 27 LKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFE 71
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 68.2 bits (165), Expect = 6e-12 Identities = 31/45 (68%), Positives = 39/45 (86%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL+GEY LR KRE+WRV++ L++IR AAR LLTL EK+PRR+FE Sbjct: 28 LKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFE 72
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 68.2 bits (165), Expect = 6e-12 Identities = 31/45 (68%), Positives = 39/45 (86%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL+GEY LR KRE+WRV++ L++IR AAR LLTL EK+PRR+FE Sbjct: 28 LKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFE 72
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 68.2 bits (165), Expect = 6e-12 Identities = 31/45 (68%), Positives = 39/45 (86%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL+GEY LR KRE+WRV++ L++IR AAR LLTL EK+PRR+FE Sbjct: 28 LKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFE 72
>RS9_PODAN (P52810) 40S ribosomal protein S9 (S7)| Length = 190 Score = 65.9 bits (159), Expect = 3e-11 Identities = 32/45 (71%), Positives = 37/45 (82%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKLVGEY LR KRE+WRV LS+IR AAR LLTL EK+P+R+FE Sbjct: 26 LKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFE 70
>RS9_DICDI (P14132) 40S ribosomal protein S9 (40S ribosomal protein 1024)| (Vegetative-specific protein V12) Length = 185 Score = 65.1 bits (157), Expect = 5e-11 Identities = 30/45 (66%), Positives = 38/45 (84%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LK+VGE+ L+ K E+WRVQYAL++IR AAR LL L EK+P+RIFE Sbjct: 25 LKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFE 69
>RS9_DROME (P55935) 40S ribosomal protein S9| Length = 195 Score = 65.1 bits (157), Expect = 5e-11 Identities = 29/45 (64%), Positives = 39/45 (86%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LK++GEY LR KRE+WRV+YAL++IR AAR LLTL EK+ +R+F+ Sbjct: 30 LKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQ 74
>RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A| Length = 190 Score = 63.2 bits (152), Expect = 2e-10 Identities = 30/45 (66%), Positives = 35/45 (77%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL GEY LR K E+WRV LS+IR AAR LLTL EK+P+R+FE Sbjct: 27 LKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFE 71
>RS9B_SCHPO (O59675) 40S ribosomal protein S9-B| Length = 191 Score = 63.2 bits (152), Expect = 2e-10 Identities = 30/45 (66%), Positives = 35/45 (77%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL GEY LR K E+WRV LS+IR AAR LLTL EK+P+R+FE Sbjct: 27 LKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFE 71
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/45 (57%), Positives = 38/45 (84%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL+G + L+ KRE+WRV+Y L+++R AAR LLTL +K+P+R+FE Sbjct: 28 LKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFE 72
>RS9_TRYBB (P17959) Probable 40S ribosomal protein S9| Length = 190 Score = 60.5 bits (145), Expect = 1e-09 Identities = 27/45 (60%), Positives = 34/45 (75%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 +KL G+Y LRCKRE+WRV LS++R AR LLTL E +PRR+ E Sbjct: 27 MKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLE 71
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 57.4 bits (137), Expect = 1e-08 Identities = 26/45 (57%), Positives = 36/45 (80%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL GE+ L+ KRE++R+ + LS+IR AAR LLT EK+P+R+FE Sbjct: 27 LKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFE 71
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 56.2 bits (134), Expect = 2e-08 Identities = 25/45 (55%), Positives = 36/45 (80%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKL GE+ L+ K+E++R+ + LS+IR AAR LLT EK+P+R+FE Sbjct: 27 LKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFE 71
>RS9_NAEFO (Q25555) 40S ribosomal protein S9| Length = 186 Score = 54.7 bits (130), Expect = 7e-08 Identities = 25/45 (55%), Positives = 34/45 (75%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LK+ G+Y L+ K+E+WR+QY L+R R ARHLLTL E + +R FE Sbjct: 30 LKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPEDDMKRQFE 74
>RS9_ENTHI (O15612) 40S ribosomal protein S9 (Fragment)| Length = 144 Score = 42.0 bits (97), Expect = 5e-04 Identities = 19/45 (42%), Positives = 30/45 (66%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 LKLVG++ L+ K+E+ RV Y L +R A+ +L K+P+R+ E Sbjct: 24 LKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLE 68
>RS4_SULTO (Q96YV8) 30S ribosomal protein S4P| Length = 177 Score = 37.0 bits (84), Expect = 0.015 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = +1 Query: 7 LVGEYXLRCKRELWRVQYALSRIRNAARHLLTL 105 L+G+Y LR KRELW Q + + R+ AR LL L Sbjct: 29 LIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>RS4_ARCFU (O28000) 30S ribosomal protein S4P| Length = 172 Score = 35.8 bits (81), Expect = 0.034 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLL 99 ++LV +Y LR KRELWR Q L + R AR LL Sbjct: 27 MQLVIKYGLRNKRELWRFQNILRKYRRVARDLL 59
>RS4_SULSO (P95987) 30S ribosomal protein S4P| Length = 181 Score = 35.4 bits (80), Expect = 0.044 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHLLTL 105 +L+G+Y LR KRE+W Q + + R+ AR LL L Sbjct: 28 ELLGKYGLRNKREIWIAQSIIRKFRHQARSLLAL 61
>RS4_PYRAE (Q8ZTV1) 30S ribosomal protein S4P| Length = 159 Score = 34.7 bits (78), Expect = 0.075 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTL 105 L+L+GEY LR K+ELW + L I AR LL++ Sbjct: 29 LQLMGEYGLRNKKELWLARARLKWITRRARSLLSM 63
>RS4_AERPE (Q9YB58) 30S ribosomal protein S4P| Length = 171 Score = 34.7 bits (78), Expect = 0.075 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHLLTL 105 +L+G Y LR K+ELW+ + R R+ AR LL L Sbjct: 28 ELMGRYGLRNKKELWKAETLARRFRHRARSLLGL 61
>RS4_SULAC (P39467) 30S ribosomal protein S4P| Length = 176 Score = 34.7 bits (78), Expect = 0.075 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +1 Query: 7 LVGEYXLRCKRELWRVQYALSRIRNAARHLLTL--XEKNPR 123 L+G+Y LR K+E+W Q + R+ AR LL L E+N R Sbjct: 29 LIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIR 69
>RS4_METKA (Q8TVC0) 30S ribosomal protein S4P| Length = 186 Score = 34.7 bits (78), Expect = 0.075 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRR 126 KL+ +Y LR K+ELWR Q L R R A+ L+ + +R Sbjct: 28 KLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR 68
>RS4_THEVO (Q97B95) 30S ribosomal protein S4P| Length = 200 Score = 33.9 bits (76), Expect = 0.13 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHL 96 K++ +Y L+ KRE+WR + LS IR+ AR+L Sbjct: 28 KILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
>RS4_HALMA (Q00862) 30S ribosomal protein S4P (HmaS4)| Length = 171 Score = 33.1 bits (74), Expect = 0.22 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +1 Query: 7 LVGEYXLRCKRELWRVQYALSRIRNAARHLL 99 L+G Y L+ K ELWR Q L R AR LL Sbjct: 28 LIGRYGLKNKEELWRAQSELRGYRREARKLL 58
>RS4_THEAC (Q9HJD7) 30S ribosomal protein S4P| Length = 199 Score = 32.7 bits (73), Expect = 0.28 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHL 96 K+V +Y L+ K+E+WR + LS IR+ AR L Sbjct: 28 KIVVKYGLKNKKEIWRSEALLSSIRSQARDL 58
>RS4_METTH (O26142) 30S ribosomal protein S4P| Length = 171 Score = 32.7 bits (73), Expect = 0.28 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKN 117 +LV +Y L+ K+E+W+ + + R R AR+LL + ++ Sbjct: 28 RLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASEH 65
>RS4_METBF (Q46GC8) 30S ribosomal protein S4P| Length = 216 Score = 32.0 bits (71), Expect = 0.49 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEKNPRRIFE 135 ++LV Y LR KRE+W+ L R+ AR LL + R E Sbjct: 27 VQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLE 71
>RS4_PICTO (Q6KZP7) 30S ribosomal protein S4P| Length = 183 Score = 31.2 bits (69), Expect = 0.83 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHL 96 +L+ +Y L+ KRELWR Q L+ R AR L Sbjct: 28 QLLIKYGLKNKRELWRAQTILTNFRTQARTL 58
>RS4_METJA (P54020) 30S ribosomal protein S4P| Length = 187 Score = 30.4 bits (67), Expect = 1.4 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +1 Query: 4 KLVGEYXLRCKRELWRVQYALSRIRNAARHLLT 102 +L +Y LR KRE+W+ + L + R AR L++ Sbjct: 29 ELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>RS4_PYRHO (O59306) 30S ribosomal protein S4P| Length = 180 Score = 29.6 bits (65), Expect = 2.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 7 LVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEK 114 L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 29 LMDKYELKNKKELWKHETQLKNFRRRARRLLAARGK 64
>RS4_PYRFU (P61993) 30S ribosomal protein S4P| Length = 180 Score = 29.6 bits (65), Expect = 2.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 7 LVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEK 114 L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 29 LMDKYELKNKKELWKHETQLKNFRRRARRLLAARGK 64
>RS4_PYRAB (P61992) 30S ribosomal protein S4P| Length = 180 Score = 29.6 bits (65), Expect = 2.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 7 LVGEYXLRCKRELWRVQYALSRIRNAARHLLTLXEK 114 L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 29 LMDKYELKNKKELWKHETQLKNFRRRARRLLAARGK 64
>RS4_PYRKO (Q5JJF2) 30S ribosomal protein S4P| Length = 180 Score = 29.3 bits (64), Expect = 3.1 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +1 Query: 19 YXLRCKRELWRVQYALSRIRNAARHLLTLXEK 114 Y L+ K+ELWR + L R AR LL K Sbjct: 33 YALKNKKELWRHETQLKEFRRRARRLLAARGK 64
>RS4_METAC (Q8TRR1) 30S ribosomal protein S4P| Length = 218 Score = 28.9 bits (63), Expect = 4.1 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLL 99 ++LV Y LR K+E+W+ L R+ AR LL Sbjct: 27 VQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>RS4_METMA (Q8PV18) 30S ribosomal protein S4P| Length = 219 Score = 28.9 bits (63), Expect = 4.1 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 1 LKLVGEYXLRCKRELWRVQYALSRIRNAARHLL 99 ++LV Y LR K+E+W+ L R+ AR LL Sbjct: 27 VQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,674,279 Number of Sequences: 219361 Number of extensions: 249543 Number of successful extensions: 616 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 616 length of database: 80,573,946 effective HSP length: 21 effective length of database: 75,967,365 effective search space used: 1823216760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
