ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27p20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016431.1| Zea mays clone Contig264 mRNA sequence 174 4e-41
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 9e-27
3gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 127 9e-27
4gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome... 127 9e-27
5gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 127 9e-27
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 127 9e-27
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 9e-27
8dbj|AK104761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 9e-27
9dbj|AK104660.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 9e-27
10dbj|AK104265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 9e-27
11dbj|AK104111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 9e-27
12dbj|AK072671.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 9e-27
13dbj|AK061350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 9e-27
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 127 9e-27
15gb|AY106684.1| Zea mays PCO086432 mRNA sequence 88 8e-15
16gb|BT016340.1| Zea mays clone Contig173 mRNA sequence 84 1e-13
17gb|AY105823.1| Zea mays PCO145462 mRNA sequence 84 1e-13
18gb|BT016876.1| Zea mays clone Contig709 mRNA sequence 72 5e-10
19gb|BT013198.1| Lycopersicon esculentum clone 134354R, mRNA sequence 54 1e-04
20gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete s... 54 1e-04
21emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22... 54 1e-04
22gb|AC084762.8| Oryza sativa chromosome 3 BAC OSJNBa0013O08 genom... 52 4e-04
23dbj|AK064760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 4e-04
24gb|DQ200374.1| Solanum tuberosum clone 059F12 unknown mRNA 46 0.027
25ref|NM_121524.3| Arabidopsis thaliana structural constituent of ... 42 0.42
26gb|BT014007.1| Lycopersicon esculentum clone 133059F, mRNA sequence 42 0.42
27gb|BT011315.1| Arabidopsis thaliana At5g15200 gene, complete cds 42 0.42
28gb|BT010847.1| Arabidopsis thaliana At5g15200 mRNA, complete cds 42 0.42
29emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome 5, BA... 42 0.42
30emb|BX829588.1|CNS0A17H Arabidopsis thaliana Full-length cDNA Co... 42 0.42
31emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 ... 40 1.6
32emb|AJ749993.1| Catharanthus roseus mRNA for 40S ribosomal prote... 40 1.6
33ref|NM_123348.1| Arabidopsis thaliana structural constituent of ... 38 6.5
34gb|AC151815.1| Solanum demissum chromosome 5 clone PGEC472P22 ma... 38 6.5
35gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESR... 38 6.5
36emb|AL603752.6| Human DNA sequence from clone RP11-296A1 on chro... 38 6.5
37emb|AL583807.20| Human DNA sequence from clone RP11-105C7 on chr... 38 6.5
38gb|BT024915.1| Arabidopsis thaliana At5g39850 mRNA, complete cds 38 6.5
39gb|AC123595.1| Homo sapiens chromosome 5 clone RP11-213H15, comp... 38 6.5
40gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence 38 6.5
41gb|AC093281.2| Homo sapiens chromosome 5 clone RP11-414H23, comp... 38 6.5
42gb|AY088109.1| Arabidopsis thaliana clone 41408 mRNA, complete s... 38 6.5
43dbj|AB010077.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 6.5
44gb|AY193429.1| Lactuca saligna genotype CGN9311 40S ribosomal pr... 38 6.5
45gb|AY193428.1| Lactuca saligna genotype US93UC10 40S ribosomal p... 38 6.5
46gb|AY193427.1| Lactuca serriola genotype W66336A 40S ribosomal p... 38 6.5
47gb|AY193426.1| Lactuca sativa cultivar Mariska 40S ribosomal pro... 38 6.5
48gb|AY193425.1| Lactuca sativa cultivar Calmar 40S ribosomal prot... 38 6.5
49gb|AY193424.1| Lactuca sativa cultivar Diana 40S ribosomal prote... 38 6.5
50gb|AC079832.18| Mus musculus strain C57BL/6J chromosome 3 clone ... 38 6.5
51emb|AL807793.7| Mouse DNA sequence from clone RP23-33N15 on chro... 38 6.5 
>gb|BT016431.1| Zea mays clone Contig264 mRNA sequence
          Length = 866

 Score =  174 bits (88), Expect = 4e-41
 Identities = 122/134 (91%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           |||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct: 169 aagctggtcggtgagtatgggctgaggtgcaagcgtgagctttggagggtccagtatgca 228

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
            ||||||||||||||||||||||||||||||||||||| ||  | |||||||| ||||| 
Sbjct: 229 ctgagcaggatccgtaatgctgcaaggcacttgctcacccttgacgagaagaacccccgt 288

                         
Query: 124 cggatctttgaggg 137
           || |||||||||||
Sbjct: 289 cgtatctttgaggg 302
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                           
Query: 4       aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
               ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 2969221 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 2969280

                                                                           
Query: 64      ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
               |||||| | ||||||||   |||||||||  ||||||||||  ||||||||||||| |||
Sbjct: 2969281 ttgagccgtatccgtaacaatgcaaggcatctgctcacacttgatgagaagaatccacgc 2969340

                             
Query: 124     cggatctttgaggg 137
               || |||||||||||
Sbjct: 2969341 cgcatctttgaggg 2969354



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 73       atccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgccggatcttt 132
                ||||| |||||||||||| |  ||||||| ||  |||||||||| ||||| || ||||||
Sbjct: 14844913 atccgcaatgctgcaagggagctgctcacccttgatgagaagaacccccgacgtatcttt 14844972

                     
Query: 133      gaggg 137
                |||||
Sbjct: 14844973 gaggg 14844977
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>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034P08, complete sequence
          Length = 173088

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                         
Query: 4     aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
             ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 14178 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 14119

                                                                         
Query: 64    ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
             |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 14118 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 14059

                           
Query: 124   cggatctttgaggg 137
             || ||||| |||||
Sbjct: 14058 cgcatcttcgaggg 14045



 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                        
Query: 4    aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
            ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 9419 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 9360

                                                                        
Query: 64   ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
            |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 9359 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 9300

                          
Query: 124  cggatctttgaggg 137
            || ||||| |||||
Sbjct: 9299 cgcatcttcgaggg 9286
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>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0007P22, complete sequence
          Length = 148068

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                          
Query: 4      aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
              ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 125696 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 125637

                                                                          
Query: 64     ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
              |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 125636 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 125577

                            
Query: 124    cggatctttgaggg 137
              || ||||| |||||
Sbjct: 125576 cgcatcttcgaggg 125563



 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                          
Query: 4      aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
              ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 120937 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 120878

                                                                          
Query: 64     ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
              |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 120877 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 120818

                            
Query: 124    cggatctttgaggg 137
              || ||||| |||||
Sbjct: 120817 cgcatcttcgaggg 120804
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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15,
              complete sequence
          Length = 166282

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                          
Query: 4      aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
              ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 106708 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 106767

                                                                          
Query: 64     ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
              |||||| | ||||||||   |||||||||  ||||||||||  ||||||||||||| |||
Sbjct: 106768 ttgagccgtatccgtaacaatgcaaggcatctgctcacacttgatgagaagaatccacgc 106827

                            
Query: 124    cggatctttgaggg 137
              || |||||||||||
Sbjct: 106828 cgcatctttgaggg 106841
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                            
Query: 4        aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
                ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 22331879 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 22331938

                                                                            
Query: 64       ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
                |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 22331939 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 22331998

                              
Query: 124      cggatctttgaggg 137
                || ||||| |||||
Sbjct: 22331999 cgcatcttcgaggg 22332012



 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                            
Query: 4        aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
                ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 22327120 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 22327179

                                                                            
Query: 64       ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
                |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 22327180 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 22327239

                              
Query: 124      cggatctttgaggg 137
                || ||||| |||||
Sbjct: 22327240 cgcatcttcgaggg 22327253
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                           
Query: 4       aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
               ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 2969332 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 2969391

                                                                           
Query: 64      ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
               |||||| | ||||||||   |||||||||  ||||||||||  ||||||||||||| |||
Sbjct: 2969392 ttgagccgtatccgtaacaatgcaaggcatctgctcacacttgatgagaagaatccacgc 2969451

                             
Query: 124     cggatctttgaggg 137
               || |||||||||||
Sbjct: 2969452 cgcatctttgaggg 2969465



 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 73       atccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgccggatcttt 132
                ||||| |||||||||||| |  ||||||| ||  |||||||||| ||||| || ||||||
Sbjct: 14839447 atccgcaatgctgcaagggagctgctcacccttgatgagaagaacccccgacgtatcttt 14839506

                     
Query: 133      gaggg 137
                |||||
Sbjct: 14839507 gaggg 14839511
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>dbj|AK104761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-H02, full
           insert sequence
          Length = 884

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 155 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 214

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
           |||||| | ||||||||   |||||||||  ||||||||||  ||||||||||||| |||
Sbjct: 215 ttgagccgtatccgtaacaatgcaaggcatctgctcacacttgatgagaagaatccacgc 274

                         
Query: 124 cggatctttgaggg 137
           || |||||||||||
Sbjct: 275 cgcatctttgaggg 288
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>dbj|AK104660.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D11, full
           insert sequence
          Length = 955

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 165 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 224

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
           |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 225 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 284

                         
Query: 124 cggatctttgaggg 137
           || ||||| |||||
Sbjct: 285 cgcatcttcgaggg 298
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>dbj|AK104265.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G01, full
           insert sequence
          Length = 884

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 155 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 214

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
           |||||| | ||||||||   |||||||||  ||||||||||  ||||||||||||| |||
Sbjct: 215 ttgagccgtatccgtaacaatgcaaggcatctgctcacacttgatgagaagaatccacgc 274

                         
Query: 124 cggatctttgaggg 137
           || |||||||||||
Sbjct: 275 cgcatctttgaggg 288
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>dbj|AK104111.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-G08, full
           insert sequence
          Length = 970

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 158 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 217

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
           |||||| | ||||||||   |||||||||  ||||||||||  ||||||||||||| |||
Sbjct: 218 ttgagccgtatccgtaacaatgcaaggcatctgctcacacttgatgagaagaatccacgc 277

                         
Query: 124 cggatctttgaggg 137
           || |||||||||||
Sbjct: 278 cgcatctttgaggg 291
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>dbj|AK072671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134P20, full
           insert sequence
          Length = 964

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 154 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 213

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
           |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 214 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 273

                         
Query: 124 cggatctttgaggg 137
           || ||||| |||||
Sbjct: 274 cgcatcttcgaggg 287
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>dbj|AK061350.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F09, full
           insert sequence
          Length = 972

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 155 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 214

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
           |||||| | ||||||||   |||||||||  ||||||||||  ||||||||||||| |||
Sbjct: 215 ttgagccgtatccgtaacaatgcaaggcatctgctcacacttgatgagaagaatccacgc 274

                         
Query: 124 cggatctttgaggg 137
           || |||||||||||
Sbjct: 275 cgcatctttgaggg 288
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                            
Query: 4        aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
                ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 22641790 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 22641849

                                                                            
Query: 64       ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
                |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 22641850 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 22641909

                              
Query: 124      cggatctttgaggg 137
                || ||||| |||||
Sbjct: 22641910 cgcatcttcgaggg 22641923



 Score =  127 bits (64), Expect = 9e-27
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                            
Query: 4        aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
                ||||| |||||||||||| |||||||||||||||||||||| ||| | || |||||||| 
Sbjct: 22637031 aagctagtgggtgagtatggactgaggtgcaagcgtgagctgtggcgtgttcagtatgct 22637090

                                                                            
Query: 64       ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
                |||||| | ||||||||   |||||||||| ||||||||||  ||||||||||||| |||
Sbjct: 22637091 ttgagccgtatccgtaacaatgcaaggcacctgctcacacttgatgagaagaatccacgc 22637150

                              
Query: 124      cggatctttgaggg 137
                || ||||| |||||
Sbjct: 22637151 cgcatcttcgaggg 22637164
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>gb|AY106684.1| Zea mays PCO086432 mRNA sequence
          Length = 965

 Score = 87.7 bits (44), Expect = 8e-15
 Identities = 111/134 (82%)
 Strand = Plus / Plus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           |||||||| ||||||||| | ||| |||||||||||||||| ||| | || |||||||| 
Sbjct: 199 aagctggttggtgagtatggcctgcggtgcaagcgtgagctgtggcgcgtgcagtatgcc 258

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
            ||||| | ||| | ||||| || ||| | |||||||| ||| |||||||||| || |||
Sbjct: 259 ctgagccgtatcaggaatgcagccagggagttgctcaccctggatgagaagaacccacgc 318

                         
Query: 124 cggatctttgaggg 137
           || |||||||||||
Sbjct: 319 cgtatctttgaggg 332
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>gb|BT016340.1| Zea mays clone Contig173 mRNA sequence
          Length = 806

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                       
Query: 10  gtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgcattgagc 69
           |||||||| ||| | |||||||||||||||||||| ||| | || ||||||||  | |||
Sbjct: 179 gtgggtgaatatggcctgaggtgcaagcgtgagctgtggcgtgtgcagtatgccctcagc 238

                                                                       
Query: 70  aggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgccggatc 129
            | ||||| |||||||||||| |  ||||||| ||  |||||||||| ||||| || |||
Sbjct: 239 cgcatccgaaatgctgcaagggagctgctcacccttgatgagaagaacccccgtcgtatc 298

                   
Query: 130 tttgaggg 137
           ||||||||
Sbjct: 299 tttgaggg 306
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>gb|AY105823.1| Zea mays PCO145462 mRNA sequence
          Length = 959

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                       
Query: 10  gtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgcattgagc 69
           |||||||| ||| | |||||||||||||||||||| ||| | || ||||||||  | |||
Sbjct: 188 gtgggtgaatatggcctgaggtgcaagcgtgagctgtggcgtgtgcagtatgccctcagc 247

                                                                       
Query: 70  aggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgccggatc 129
            | ||||| |||||||||||| |  ||||||| ||  |||||||||| ||||| || |||
Sbjct: 248 cgcatccgaaatgctgcaagggagctgctcacccttgatgagaagaacccccgtcgtatc 307

                   
Query: 130 tttgaggg 137
           ||||||||
Sbjct: 308 tttgaggg 315
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>gb|BT016876.1| Zea mays clone Contig709 mRNA sequence
          Length = 969

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 109/134 (81%)
 Strand = Plus / Minus

                                                                       
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagtatgca 63
           |||||||| ||||||||| | ||| |||||||||| ||||| ||| | || |||||||| 
Sbjct: 816 aagctggttggtgagtatggcctgcggtgcaagcgcgagctgtggcgcgtgcagtatgcc 757

                                                                       
Query: 64  ttgagcaggatccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgc 123
            ||||| | ||| | ||||| || ||| |  ||||||| ||| |||||||||| || |||
Sbjct: 756 ctgagccgtatcaggaatgcagccagggagctgctcaccctggatgagaagaacccacgc 697

                         
Query: 124 cggatctttgaggg 137
           || |||||||||||
Sbjct: 696 cgtatctttgaggg 683
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>gb|BT013198.1| Lycopersicon esculentum clone 134354R, mRNA sequence
          Length = 963

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 16  gagtatngactgaggtgcaagcgtgagctctggagggtccagtatgcattgagcaggatc 75
           |||||| |||||||||||||| | ||| | ||||| || |||||||| |||||| | |||
Sbjct: 181 gagtatggactgaggtgcaagagggagttgtggagagttcagtatgctttgagccgtatc 240

                         
Query: 76  cgtaatgctgcaag 89
            | |||||||||||
Sbjct: 241 aggaatgctgcaag 254
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>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence
          Length = 108028

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 100   acactgnatgagaagaatccccgccggatctttgaggg 137
             |||||| ||||||||||||| || ||||||||||||||
Sbjct: 53973 acactggatgagaagaatcctcgtcggatctttgaggg 54010
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>emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22 on chromosome 3,
             complete sequence
          Length = 134390

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 100   acactgnatgagaagaatccccgccggatctttgaggg 137
             |||||| ||||||||||||| || ||||||||||||||
Sbjct: 17265 acactggatgagaagaatcctcgtcggatctttgaggg 17228
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>gb|AC084762.8| Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete
             sequence
          Length = 148021

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 73    atccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgccggatcttt 132
             ||||| |||||||||||| |  ||||||| ||  |||||||||| ||||| || ||||||
Sbjct: 87855 atccgcaatgctgcaagggagctgctcacccttgatgagaagaacccccgacgtatcttt 87796

                  
Query: 133   gaggg 137
             |||||
Sbjct: 87795 gaggg 87791
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>dbj|AK064760.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H01, full
           insert sequence
          Length = 989

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  atccgtaatgctgcaaggcacttgctcacactgnatgagaagaatccccgccggatcttt 132
           ||||| |||||||||||| |  ||||||| ||  |||||||||| ||||| || ||||||
Sbjct: 254 atccgcaatgctgcaagggagctgctcacccttgatgagaagaacccccgacgtatcttt 313

                
Query: 133 gaggg 137
           |||||
Sbjct: 314 gaggg 318
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>gb|DQ200374.1| Solanum tuberosum clone 059F12 unknown mRNA
          Length = 875

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                       
Query: 16  gagtatngactgaggtgcaagcgtgagctctggagggtccagtatgcattgagcaggatc 75
           |||||| |||||||||||||  | ||| | ||||| || |||||||| |||||| | |||
Sbjct: 175 gagtatggactgaggtgcaaaagggagttgtggagagttcagtatgctttgagccgtatc 234

                         
Query: 76  cgtaatgctgcaag 89
            | |||||||||||
Sbjct: 235 aggaatgctgcaag 248
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>ref|NM_121524.3| Arabidopsis thaliana structural constituent of ribosome AT5G15200
           mRNA, complete cds
          Length = 885

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagta 59
           |||||||| ||||||||| | ||| |   |||||||||||||||||| || |||||
Sbjct: 138 aagctggttggtgagtatggtctgcgtaacaagcgtgagctctggagagtgcagta 193
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>gb|BT014007.1| Lycopersicon esculentum clone 133059F, mRNA sequence
          Length = 891

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 25  ctgaggtgcaagcgtgagctctggagggtccagtatgcattgagc 69
           |||||||||||| | ||||| ||||| || |||||||| ||||||
Sbjct: 175 ctgaggtgcaagagagagctttggagagttcagtatgccttgagc 219
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>gb|BT011315.1| Arabidopsis thaliana At5g15200 gene, complete cds
          Length = 597

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagta 59
           |||||||| ||||||||| | ||| |   |||||||||||||||||| || |||||
Sbjct: 91  aagctggttggtgagtatggtctgcgtaacaagcgtgagctctggagagtgcagta 146
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>gb|BT010847.1| Arabidopsis thaliana At5g15200 mRNA, complete cds
          Length = 745

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagta 59
           |||||||| ||||||||| | ||| |   |||||||||||||||||| || |||||
Sbjct: 117 aagctggttggtgagtatggtctgcgtaacaagcgtgagctctggagagtgcagta 172
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>emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project)
          Length = 103996

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 4     aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagta 59
             |||||||| ||||||||| | ||| |   |||||||||||||||||| || |||||
Sbjct: 39894 aagctggttggtgagtatggtctgcgtaacaagcgtgagctctggagagtgcagta 39839
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>emb|BX829588.1|CNS0A17H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZA06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 803

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 4   aagctggtgggtgagtatngactgaggtgcaagcgtgagctctggagggtccagta 59
           |||||||| ||||||||| | ||| |   |||||||||||||||||| || |||||
Sbjct: 132 aagctggttggtgagtatggtctgcgtaacaagcgtgagctctggagagtgcagta 187
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>emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete
              sequence
          Length = 122557

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                 
Query: 100    acactgnatgagaagaatccccgccggatctttga 134
              |||||| |||||||||| || || |||||||||||
Sbjct: 105914 acactggatgagaagaaccctcgtcggatctttga 105880



 Score = 40.1 bits (20), Expect = 1.6
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                
Query: 100   acactgnatgagaagaatccccgccggatctttga 134
             |||||| |||||||||| || || |||||||||||
Sbjct: 98976 acactggatgagaagaaccctcgtcggatctttga 99010
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>emb|AJ749993.1| Catharanthus roseus mRNA for 40S ribosomal protein S9 (rps9 gene)
          Length = 939

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                       
Query: 26  tgaggtgcaagcgtgagctctggagggtccagtatgcattgagcaggatccgtaatgctg 85
           ||||||||||| | ||||| |||||||| || ||||  |||||| | ||| | |||||||
Sbjct: 205 tgaggtgcaagagggagctttggagggttcaatatgttttgagccgtatcagaaatgctg 264

               
Query: 86  caag 89
           ||||
Sbjct: 265 caag 268
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>ref|NM_123348.1| Arabidopsis thaliana structural constituent of ribosome AT5G39850
           mRNA, complete cds
          Length = 879

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 185 agcagaatccgtaatgctgcaag 207
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>gb|AC151815.1| Solanum demissum chromosome 5 clone PGEC472P22 map MAP_LOC, complete
              sequence
          Length = 136150

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 60/74 (81%)
 Strand = Plus / Plus

                                                                          
Query: 16     gagtatngactgaggtgcaagcgtgagctctggagggtccagtatgcattgagcaggatc 75
              |||||| ||||| |||||||  | ||| | ||||| || |||||||| |||||| | |||
Sbjct: 119932 gagtatggactgcggtgcaaaagggagttgtggagagttcagtatgctttgagccgtatc 119991

                            
Query: 76     cgtaatgctgcaag 89
               | |||||||||||
Sbjct: 119992 aggaatgctgcaag 120005
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>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds
          Length = 590284

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     aatgctgcaaggcacttgc 97
              |||||||||||||||||||
Sbjct: 266843 aatgctgcaaggcacttgc 266825
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>emb|AL603752.6| Human DNA sequence from clone RP11-296A1 on chromosome 1 Contains
            part of the ESRRG gene for  estrogen-related receptor
            gamma, complete sequence
          Length = 48868

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   aatgctgcaaggcacttgc 97
            |||||||||||||||||||
Sbjct: 6507 aatgctgcaaggcacttgc 6525
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>emb|AL583807.20| Human DNA sequence from clone RP11-105C7 on chromosome 9 Contains the
             5' end of the LAMC3 gene for laminin gamma 3 and a CpG
             island, complete sequence
          Length = 92607

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    tgagctctggagggtccag 57
             |||||||||||||||||||
Sbjct: 49972 tgagctctggagggtccag 49990
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>gb|BT024915.1| Arabidopsis thaliana At5g39850 mRNA, complete cds
          Length = 594

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 154 agcagaatccgtaatgctgcaag 176
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>gb|AC123595.1| Homo sapiens chromosome 5 clone RP11-213H15, complete sequence
          Length = 174874

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 81     tgctgcaaggcacttgctcacac 103
              |||||||||||| ||||||||||
Sbjct: 169943 tgctgcaaggcagttgctcacac 169921
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>gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence
          Length = 206117

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     gagctctggagggtccagt 58
              |||||||||||||||||||
Sbjct: 120298 gagctctggagggtccagt 120316
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>gb|AC093281.2| Homo sapiens chromosome 5 clone RP11-414H23, complete sequence
          Length = 167455

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 81     tgctgcaaggcacttgctcacac 103
              |||||||||||| ||||||||||
Sbjct: 133987 tgctgcaaggcagttgctcacac 134009
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>gb|AY088109.1| Arabidopsis thaliana clone 41408 mRNA, complete sequence
          Length = 880

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 185 agcagaatccgtaatgctgcaag 207
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>dbj|AB010077.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH19
          Length = 77380

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 67   agcaggatccgtaatgctgcaag 89
            ||||| |||||||||||||||||
Sbjct: 3116 agcagaatccgtaatgctgcaag 3138
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>gb|AY193429.1| Lactuca saligna genotype CGN9311 40S ribosomal protein S9 gene,
           partial cds
          Length = 516

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 513 agcagaatccgtaatgctgcaag 491
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>gb|AY193428.1| Lactuca saligna genotype US93UC10 40S ribosomal protein S9 gene,
           partial cds
          Length = 516

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 513 agcagaatccgtaatgctgcaag 491
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>gb|AY193427.1| Lactuca serriola genotype W66336A 40S ribosomal protein S9 gene,
           partial cds
          Length = 520

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 517 agcagaatccgtaatgctgcaag 495
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>gb|AY193426.1| Lactuca sativa cultivar Mariska 40S ribosomal protein S9 gene,
           partial cds
          Length = 519

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 516 agcagaatccgtaatgctgcaag 494
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>gb|AY193425.1| Lactuca sativa cultivar Calmar 40S ribosomal protein S9 gene,
           partial cds
          Length = 519

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 516 agcagaatccgtaatgctgcaag 494
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>gb|AY193424.1| Lactuca sativa cultivar Diana 40S ribosomal protein S9 gene,
           partial cds
          Length = 516

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 67  agcaggatccgtaatgctgcaag 89
           ||||| |||||||||||||||||
Sbjct: 513 agcagaatccgtaatgctgcaag 491
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>gb|AC079832.18| Mus musculus strain C57BL/6J chromosome 3 clone rp23-393j8, complete
              sequence
          Length = 194354

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     gagctctggagggtccagt 58
              |||||||||||||||||||
Sbjct: 120129 gagctctggagggtccagt 120147
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>emb|AL807793.7| Mouse DNA sequence from clone RP23-33N15 on chromosome 2, complete
             sequence
          Length = 221903

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    gcgtgagctctggagggtc 54
             |||||||||||||||||||
Sbjct: 20832 gcgtgagctctggagggtc 20850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 739,300
Number of Sequences: 3902068
Number of extensions: 739300
Number of successful extensions: 39378
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39268
Number of HSP's gapped (non-prelim): 110
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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