>DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4644

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 252  AAAASTVDSRPVWEPSLHPPETSSGWRPVAKQXXXXXXXSVSHVKNP 112
            A   ST D RP W  +LH   T+S W  +  Q       +V ++K+P
Sbjct: 4362 ARTDSTSDGRPAWMRTLH--TTASNWLHLIPQTLSPLKRTVENIKDP 4406

>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
          Length = 3034

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = +2

Query: 50   TNITAAEIRPCEARXRPASQGGFLTCETDGGGGSESCLATGRQPLLVSGGCKEG 211
            T I      PC A  R  S+ G  TCE       E C    R     SG CK G
Sbjct: 1377 TEIDLCYSNPCGANGRCRSREGGYTCECFEDFTGEHCQVNVRSGRCASGVCKNG 1430

>DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4646

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 240  STVDSRPVWEPSLHPPETSSGWRPVAKQXXXXXXXSVSHVKNP 112
            ST D RP W  +LH   T+S W  +  Q       +V ++K+P
Sbjct: 4368 STSDGRPAWMRTLH--TTASNWLHLIPQTLSHLKRTVENIKDP 4408

>CELR2_HUMAN (Q9HCU4) Cadherin EGF LAG seven-pass G-type receptor 2 precursor|
            (Epidermal growth factor-like 2) (Multiple epidermal
            growth factor-like domains 3) (Flamingo 1)
          Length = 2923

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +2

Query: 50   TNITAAEIRPCEARXRPASQGGFLTCETDGGGGSESCLATGRQPLLVSGGCKEG 211
            T +     RPC    R  S+ G  TC    G   E C  + R      G CK G
Sbjct: 1287 TEVDLCYSRPCGPHGRCRSREGGYTCLCRDGYTGEHCEVSARSGRCTPGVCKNG 1340

>UB7I1_HUMAN (Q9NWF9) E3 ubiquitin ligase TRIAD3 (EC 6.3.2.-)|
           (Ubiquitin-conjugating enzyme 7-interacting protein 1)
           (Zinc finger protein inhibiting NF-kappa-B) (Triad
           domain-containing protein 3)
          Length = 866

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 155 SCLATGRQPLLVSGGCKEGSQTGLLSTVDAAAA*SKQREPHQSARLPHPKLHAFELEPDE 334
           S L T   PL       E S+T LLS +  +AA +  +   +   L HP   +   +P E
Sbjct: 128 SLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQQPRE 187

Query: 335 L 337
           +
Sbjct: 188 I 188

>MTMR1_HUMAN (Q13613) Myotubularin-related protein 1 (EC 3.1.3.-)|
          Length = 665

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 DGGGGSESCLATGRQPLLVSGGCKEGSQTGLLSTVDA 244
           +GGGG     A GR+P   +GG   GS+   + T+D+
Sbjct: 13  EGGGGPNPGPAGGRRPPRAAGGATAGSRQPSVETLDS 49

>EMAL1_HUMAN (O00423) Echinoderm microtubule-associated protein-like 1 (EMAP-1)|
           (HuEMAP-1)
          Length = 717

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 255 HAAAASTVDSRPVWEPSLHPPETSSGWRP 169
           HA     V  RPVW+  +  P  SSG+ P
Sbjct: 468 HATLWDAVGHRPVWDKIIEDPAQSSGFHP 496

>CELR1_HUMAN (Q9NYQ6) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
            (Flamingo homolog 2) (hFmi2)
          Length = 3014

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = +2

Query: 50   TNITAAEIRPCEARXRPASQGGFLTCETDGGGGSESCLATGRQPLLVSGGCKEG 211
            T I      PC A  R  S+ G  TCE       E C    R     +G CK G
Sbjct: 1362 TEIDLCYSDPCGANGRCRSREGGYTCECFEDFTGEHCEVDARSGRCANGVCKNG 1415

>DYHC_RAT (P38650) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1) (MAP 1C)
          Length = 4644

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 237  TVDSRPVWEPSLHPPETSSGWRPVAKQXXXXXXXSVSHVKNP 112
            T D RP W  +LH   T+S W  +  Q       +V ++K+P
Sbjct: 4367 TSDGRPAWMRTLH--TTASNWLHLIPQTLSPLKRTVENIKDP 4406

>CUTL2_MOUSE (P70298) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1426

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 101 ASQGGFLTC--ETDGGGGSESCLATGRQPLLV 190
           ASQ G LTC  + DGGGGS S  +T + PL V
Sbjct: 674 ASQNGALTCVKQEDGGGGSGSS-STVQAPLAV 704

>V2R_BOVIN (P48044) Vasopressin V2 receptor (Renal-type arginine vasopressin|
           receptor) (Antidiuretic hormone receptor) (AVPR V2)
          Length = 370

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 LTCETDGGGGSESCLATGRQPLLVSGGCKEGSQTGLLSTVDAAAA 253
           L+  T  G GSE  L T R PLL        ++  LLSTV  A A
Sbjct: 14  LSQPTPAGNGSEGELLTARDPLLAQ------AELALLSTVFVAVA 52

>CELR2_RAT (Q9QYP2) Cadherin EGF LAG seven-pass G-type receptor 2 (Multiple|
           epidermal growth factor-like domains 3) (Fragment)
          Length = 2144

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +2

Query: 50  TNITAAEIRPCEARXRPASQGGFLTCETDGGGGSESCLATGRQPLLVSGGCKEG 211
           T +     RPC       S+ G  TC    G   E C  + R      G CK G
Sbjct: 512 TEVDLCYSRPCGPHGHCRSREGGYTCLCRDGYTGEHCEVSARSGRCTPGVCKNG 565

>KCC1G_RAT (Q7TNJ7) Calcium/calmodulin-dependent protein kinase type 1G (EC|
           2.7.11.17) (CaM kinase IG) (CaM kinase I gamma) (CaMKI
           gamma) (CaMKI-gamma) (CaM-KI gamma) (CaMKIG) (CaMK-like
           CREB kinase III) (CLICK III)
          Length = 476

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 2   GSVPGE*NPSQILTGRTNITAAEIRPCEARXRPASQGG-FLTCETDGGGGSESCLATGRQ 178
           GS       + IL   T + A    PC    RP++ GG  L C  +G     S L   +Q
Sbjct: 349 GSHDSSITEAPILDPSTPLPALTRLPCSHSSRPSAPGGRSLNCLVNGSLRISSSLVPMQQ 408

Query: 179 PLLVSGGC 202
             L +G C
Sbjct: 409 GPLATGPC 416

>RS4_PELCD (Q3A6M1) 30S ribosomal protein S4|
          Length = 209

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 199 MQRGLPNWPAVHRRCSSSMKQTAGTPPVRETATS 300
           M+RGLP+W  + R    + K T  T PVRE  T+
Sbjct: 165 MRRGLPSWVELDR---EAFKGTFKTLPVREEMTT 195

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +1

Query: 244  SSSMKQTAGTPPVRETATSQTSCI*TGTR*TPVSR*TPGFFSCSP 378
            +SS + TAGTP V  TAT+ T    T ++ TP S  +PG  +  P
Sbjct: 1927 ASSTQATAGTPHVSTTATTPTV---TSSKATPFS--SPGTATALP 1966



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +1

Query: 244  SSSMKQTAGTPPVRETATSQTSCI*TGTR*TPVSR*TPGFFSCSP 378
            +SS + TAGTP V  TAT+ T    T ++ TP S  +PG  +  P
Sbjct: 4410 ASSTQATAGTPHVSTTATTPTV---TSSKATPSS--SPGTATALP 4449

>IL12A_CAPHI (O02814) Interleukin-12 alpha chain precursor (IL-12A) (Cytotoxic|
           lymphocyte maturation factor 35 kDa subunit) (CLMF p35)
          Length = 221

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/75 (22%), Positives = 36/75 (48%)
 Frame = +2

Query: 149 SESCLATGRQPLLVSGGCKEGSQTGLLSTVDAAAA*SKQREPHQSARLPHPKLHAFELEP 328
           +ESCLA+    L+ +G C    +T  ++T+   +     +  H   +  + KL    ++P
Sbjct: 95  NESCLASRETSLITNGHCLASGKTSFMTTLCLRSIYKDLKMYHMEFQAINAKL---LMDP 151

Query: 329 DELQSADRRLVSSAA 373
               S D+ ++++ A
Sbjct: 152 KRQVSLDQNMLAAIA 166

>XERC_RHILO (Q98ED9) Tyrosine recombinase xerC|
          Length = 312

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +2

Query: 86  ARXRPASQGGFLTCETDGGGGSESCLATGRQPLLVSGGCKEGSQTGLLSTVDAAAA*SKQ 265
           A  RPA   GFL    + G G+ +    GR    +    +   + GL++   AAA     
Sbjct: 62  ANLRPADLRGFLAARRNAGAGART---LGRGLAGIRSLLRFLERRGLVNAAGAAAL---- 114

Query: 266 REPHQSARLPHP 301
           R P Q   LP P
Sbjct: 115 RAPRQPKSLPKP 126

>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 273 GSRCLLHAAAASTVDSRPVWEPSLHPPETSSGWRP 169
           GSR +  +A A+  D RP+W P   PPE   G  P
Sbjct: 50  GSRSVAVSAVAADPD-RPLWFPGSTPPEWLDGSLP 83

>AT131_HUMAN (Q9HD20) Probable cation-transporting ATPase 13A1 (EC 3.6.3.-)|
          Length = 1204

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 157  LLGNGPPTAACFRRMQRGLPNWPAVHRRCSS-SMKQTAGTPPVRETATSQ 303
            LL N P      RR  R  P       R +S + KQ +G PP  E  TSQ
Sbjct: 881  LLANAPERVVERRRRPRDSPTLSNSGIRATSRTAKQRSGLPPSEEQPTSQ 930

>ZN710_HUMAN (Q8N1W2) Zinc finger protein 710|
          Length = 664

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 191 SGGCKEGSQTGLLSTVDAAAA*SKQREPHQSARLPHPKLHAFELEP 328
           SGGC    Q+  +  +D +A   K R      R P P+L+    +P
Sbjct: 144 SGGCDALVQSSAVKMIDLSAFSRKPRTLRHLPRTPRPELNVAPYDP 189

>SEM6B_HUMAN (Q9H3T3) Semaphorin-6B precursor (Semaphorin Z) (Sema Z)|
          Length = 888

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = +2

Query: 98  PASQGGFLTCETDGGGGS----ESCLATGRQPLLVSGGCKEGSQTGLLSTVDAAAA*SKQ 265
           P  +GG       GGGG+    E+ LA    PL+ +G  K     G    +D+    + +
Sbjct: 662 PGGRGG------GGGGGAGVPPEALLA----PLMQNGWAKATLLQGGPHDLDSGLLPTPE 711

Query: 266 REPHQSARLPHPKLHAFELEPDELQSADRRLVSSAAA 376
           + P    RLP P  H   L P         L +SA++
Sbjct: 712 QTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASS 748

>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 137 GGGGSESCLATGRQPLLVSGGCKEGSQTGL 226
           G GG   C   GR+     G C+ GSQ  +
Sbjct: 102 GAGGDRVCFNLGRELYFYPGCCRSGSQRSI 131

>CWC25_GIBZE (Q4IRI9) Pre-mRNA-splicing factor CWC25|
          Length = 393

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 34  NTDGEDEHHSSRNPAL*STXPSSQPRRILDMRD*WRRRKRE 156
           + DGED HH  R     S   S  PRR    R+   RR+R+
Sbjct: 192 SADGEDRHHRRRR----SYSRSQSPRRRDGSREDRHRRRRD 228

>APGM_PYRFU (P58814) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (aPGAM)
          Length = 411

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 164 ATGRQPLLVSGGCKEGSQTGLLSTVDAAAA*SKQREPHQSARLPHP 301
           ATG + +LV  G  EG + G             + +PH++ + PHP
Sbjct: 144 ATGHRAVLVLKGMAEGYKVG-------------ENDPHEAGKPPHP 176

>ALO_NEUCR (Q7SGY1) Putative D-arabinono-1,4-lactone oxidase (EC 1.1.3.37)|
           (ALO) (L-galactono-gamma-lactone oxidase)
          Length = 556

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 326 VPVQMHEVWDVAVSRTGGVPAVCFMLLLHRRWTAGQFGS 210
           +P  + E+ ++A  R GG+P       +HR W AG F S
Sbjct: 12  LPSNVREIIELASQRDGGIPFRAKTAHVHRTW-AGTFTS 49

>LRP5_MOUSE (Q91VN0) Low-density lipoprotein receptor-related protein 5|
           precursor (LRP7) (Lr3)
          Length = 1614

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 125 CETDGGGGSESCLATGRQPLLVSGGCKEGSQ 217
           CE D GG S  CL + R+P   S  C  G Q
Sbjct: 298 CEEDNGGCSHLCLLSPREP-FYSCACPTGVQ 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,332,731
Number of Sequences: 219361
Number of extensions: 1292773
Number of successful extensions: 3723
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)