>CCDC8_RAT (P62521) Probable Coiled-coil domain-containing protein 8|
          Length = 643

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 33/111 (29%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
 Frame = +3

Query: 177 PEVTTGAPLDNQRVAEPDIKMGASPVNECAAKTATEAA-----DVVTNLRVTTVASFVNR 341
           P     A    +  A P  +   +P  E A    TEAA     +   N R    AS    
Sbjct: 378 PRAEAAANPRAEATANPRAEAAVNPRTEAAVNPRTEAAANPRAEAAVNPRAEATASPRAE 437

Query: 342 GVVEPDIKMEASPAKESAAEMDFVHPGFLATEAATHPGLPERVSLANEAVA 494
             V    +  ASP  E+AA         L  EAA  P     VS   EAVA
Sbjct: 438 AEVNQKTEATASPRAETAASPRVEAAASLRVEAAASPRAEATVSPRAEAVA 488



 Score = 30.8 bits (68), Expect = 4.6
 Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
 Frame = +3

Query: 210 QRVAEPDIKMGASPVNECAAKTATEAADVVTNLRVTTVASFVNRGVVEPDIKMEASPAKE 389
           +  A P  +  ASP  E AA    EAA    N R    A+        P  +  A+P  E
Sbjct: 341 EAAANPRAEAAASPRAEAAANPRAEAA---ANPRAEATANPRAEAAANPRAEATANPRAE 397

Query: 390 SAAEMDFVHPGFLATEAATHPGLPERVSLANEAV----AEREVSEAGWLVSEP 536
           +A            TEAA +P     V+   EA     AE EV++     + P
Sbjct: 398 AAVNPRTEAAVNPRTEAAANPRAEAAVNPRAEATASPRAEAEVNQKTEATASP 450

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 38/187 (20%), Positives = 60/187 (32%)
 Frame = -2

Query: 619 SGSAVPSLSRGXXXXXXXXXXXXXXXXAGSLTSQPASETSRSATASLARETLSGSPG*VA 440
           S + VP+ S                  + +    P+S T+ S++A +   T   S   V 
Sbjct: 325 SSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVT 384

Query: 439 ASVARKPGCTKSISAADSLAGEASILISGSTTPLLTKEATVVTLRXXXXXXXXXXXXXXX 260
           +S       T+S SA       ++   S +     T E++   +                
Sbjct: 385 SST------TESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSST 438

Query: 259 XXTGEAPILISGSATRWLSRGAPVVTSGEVTTYXXXXXXXXXXXSTGEAPILISGSVTPL 80
             +  AP+  S +     S  APV T    TT             +  AP+    S T  
Sbjct: 439 TESSSAPVTSSTTE----SSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSST-T 493

Query: 79  LSRGAPV 59
            S  APV
Sbjct: 494 ESSSAPV 500



 Score = 31.2 bits (69), Expect = 3.5
 Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 3/190 (1%)
 Frame = -2

Query: 619  SGSAVPSLSRGXXXXXXXXXXXXXXXXAGSLTSQPASETSRSATASLARETL--SGSPG* 446
            S + VP+ S                  + +    P+S T+ S++A +   T   S +P  
Sbjct: 454  SSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVP 513

Query: 445  VAASVARKPGCTKSISAADSLAGEASILISGSTTPLLTKEATVVTLRXXXXXXXXXXXXX 266
              +S   +     + + + S    +S  ++ STT   +  A V T               
Sbjct: 514  TPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTE--SSSAPVPTPSSSTTESSSTPVTS 571

Query: 265  XXXXTGEAPILISGSATRWLSRGAPVVTSGEVTTYXXXXXXXXXXXSTGEAPIL-ISGSV 89
                +  AP+    S+T   S  APV T    TT            ST E+    ++ S 
Sbjct: 572  STTESSSAPVPTPSSSTT-ESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSST 630

Query: 88   TPLLSRGAPV 59
            T   S  APV
Sbjct: 631  TE--SSSAPV 638

>BNB_DROME (P29746) Protein bangles and beads|
          Length = 442

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
 Frame = +3

Query: 198 PLDNQRVA-EPDIKMGASPVNECAAKTATEAADVVTNLRVTTVASFVNRGVV---EPDIK 365
           P+ ++ VA +PD    A  + +    TA E A +            +        +PD+ 
Sbjct: 20  PVPDEEVAIQPDSGAKAELLTKTVLPTAVEPAPLKPEAEKPAETKTIEAKAAVPEQPDVN 79

Query: 366 MEASP---AKESAAEMDFVHPGFLATEAATHPGLPERVSLANEAVAERE 503
              SP   A E A E++ V     A +  T P +PE+ +L  EA   +E
Sbjct: 80  ANPSPSTPAAEPAKEINSVELKSSAPDVETAPAIPEKKTLPEEAKPAQE 128

>KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-associated|
           protein 4.14) (Ultrahigh sulfur keratin-associated
           protein 4.14)
          Length = 195

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 37/123 (30%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
 Frame = +2

Query: 206 QPTCCRARY*NGSFSCQ*MXXXXXXXGSRCSHQSESYNCSFLRQQRCCRARY*NGSFSCQ 385
           QPTCCR R    S  C+          S C  Q     C    Q  CCR R    S  C+
Sbjct: 61  QPTCCRPRCCISS-CCR----PSCCVSSCCKPQCCQSMCC---QPTCCRPRCCISS-CCR 111

Query: 386 RICR*NGFCTPR---------FPCY*SCNSSRTTRKS---FSC**SCC*ARSFRGRLACE 529
             C  +  C P+           C+ SC+ S   R S    SC   CC  R   G ++C 
Sbjct: 112 PSCCVSSCCRPQCCQSVCCQPTCCHPSCSISSCCRPSCCESSCCRPCCCLRPVCGGVSCH 171

Query: 530 *AC 538
             C
Sbjct: 172 TTC 174

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
 Frame = -2

Query: 640 KKGPILVSGSAVPSLSRGXXXXXXXXXXXXXXXXAGSLTSQPASETSRSATASLARETLS 461
           K      S ++  +   G                  S T+  ASETS  ++ + A  + S
Sbjct: 325 KSAESAASSASTATTKAGEATEQASAAARSASAAKTSETNAKASETSAESSKTAAASSAS 384

Query: 460 GSPG*VAASVARKPGCTKSISAADSLAGEASIL---ISGSTTPLLTKEAT 320
            +    +++ A K   T+  SAA S A  AS      +GS T     ++T
Sbjct: 385 SAASSASSASASKDEATRQASAAKSSATTASTKATEAAGSATAAAQSKST 434

>KRA48_HUMAN (Q9BYQ9) Keratin-associated protein 4-8 (Keratin-associated protein|
           4.8) (Ultrahigh sulfur keratin-associated protein 4.8)
           (Fragment)
          Length = 114

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 344 CCRARY*NGSFSCQRICR*NGFCTPRFPCY*SCNSSRTTRKSF---SC**SCC*ARSFRG 514
           CC+ +       CQ +C     C P   C+ SC+ S   R S    SC   CC  R   G
Sbjct: 38  CCKPQ------CCQSVC-----CQPTC-CHPSCSISSCCRPSCCESSCCRPCCCVRPVCG 85

Query: 515 RLACE*AC 538
           R++C   C
Sbjct: 86  RVSCHTTC 93

>FBP1_STRPU (P10079) Fibropellin-1 precursor (Fibropellin-I) (Epidermal growth|
           factor-related protein 1) (UEGF-1)
          Length = 1064

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/96 (19%), Positives = 35/96 (36%)
 Frame = -1

Query: 317 CNSQIGDYICCLSCSFSSTFIDRRSSHFNIWLCNTLVVEGSSSCNFW*GDYVCCLSCSFR 138
           C   +  YIC  +  F  T  +  +       C +   +  ++C      YVC     + 
Sbjct: 495 CTDLVNGYICTCAAGFEGTNCETDTDE-----CASFPCQNGATCTDQVNGYVCTCVPGYT 549

Query: 137 SRFIDRRSTHFNIWLCDTFVVKGSSSCNFRHDGYIC 30
               +      +I  C +F      +CN + +GY+C
Sbjct: 550 GVLCET-----DINECASFPCLNGGTCNDQVNGYVC 580

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
 Frame = -1

Query: 317  CNSQIGDYICCLSCSFSSTFIDRRSSHFNIWLCNTLVVEGSSSCNFW*GDYVCCLSCSFR 138
            C  +IG Y C     F+    +R     N  L N    EGS  C     DY+C      R
Sbjct: 1241 CMDRIGGYSCRCLPGFAG---ERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVC----R 1293

Query: 137  SRFIDRRSTHFNIWLCDTFVVKGSSSC---NFRHDGYIC 30
            S F  R    F + +C         +C   +   DG+IC
Sbjct: 1294 SAFTGRHCETF-VDVCPQMPCLNGGTCAVASNMPDGFIC 1331

>CBIO2_UREPA (Q9PPV1) Cobalt import ATP-binding protein cbiO 2|
          Length = 294

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +1

Query: 571 KLQLELPLTVKALQNLK---LKLDLSFANESTAE 663
           K+QL++P T+K  + LK   LK+DL+  NE   E
Sbjct: 256 KMQLDIPFTLKLAKTLKEKGLKIDLTLNNEELIE 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,406,956
Number of Sequences: 219361
Number of extensions: 1270774
Number of successful extensions: 3721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3712
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)