ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27o07 |
|---|---|
| Clone Library Name | barley_pub |
>FA18_ARATH (Q8LEK2) FAM18-like protein At1g09330| Length = 186 Score = 144 bits (362), Expect = 7e-35 Identities = 70/85 (82%), Positives = 74/85 (87%) Frame = +2 Query: 125 QVVSENYANPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSG 304 Q ENYANP TCLFHVLFK +ALAFYIL +LF SFVIIFV+TVLLAALDFWVVKNVSG Sbjct: 8 QAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSG 67 Query: 305 RILVGLRWWNEIDDDGNSVWKFECL 379 RILVGLRWWNEI+D G SVWKFE L Sbjct: 68 RILVGLRWWNEINDLGESVWKFESL 92
>YC2L_CAEEL (Q18449) Hypothetical protein C34D4.4 in chromosome IV| Length = 247 Score = 95.1 bits (235), Expect = 4e-20 Identities = 44/119 (36%), Positives = 63/119 (52%) Frame = +2 Query: 17 KQRKPKAGASLAPKGXXXXXXXXXXXXXXXGSMDRPQVVSENYANPITCLFHVLFKASAL 196 KQ +A +S P S + + P L H+ FK +AL Sbjct: 28 KQHTSRANSSTFPTKMSGFENDISIGATMTQSQTSQGFSLQMFGKPTIVLAHLSFKGAAL 87 Query: 197 AFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDDGNSVWKFE 373 FY + F SF++ F++ + L ++DFW VKN++GR+LVGLRWWN +D DGN+ WKFE Sbjct: 88 FFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLVGLRWWNFVDADGNNHWKFE 146
>FA18_DROME (Q8IQC1) FAM18-like protein CG5021| Length = 223 Score = 95.1 bits (235), Expect = 4e-20 Identities = 41/87 (47%), Positives = 53/87 (60%) Frame = +2 Query: 113 MDRPQVVSENYANPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVK 292 M P + Y +P FH+ F+ +A+ Y+ F SF+ FV VL + DFW VK Sbjct: 25 MRDPSRAGQKYTHPYVTFFHLFFRGAAILIYMFCGWFSDSFITSFVFVVLFLSADFWTVK 84 Query: 293 NVSGRILVGLRWWNEIDDDGNSVWKFE 373 N+SGR+LVGLRWWN +DDDG S W FE Sbjct: 85 NISGRLLVGLRWWNYVDDDGVSHWVFE 111
>FA18B_PONPY (Q5R9I4) Protein FAM18B| Length = 205 Score = 92.0 bits (227), Expect = 3e-19 Identities = 38/75 (50%), Positives = 51/75 (68%) Frame = +2 Query: 149 NPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRW 328 +P+ FH+ F+ SA+ Y+L L SF+ V +LL + DFW VKNV+GR++VGLRW Sbjct: 33 HPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRW 92 Query: 329 WNEIDDDGNSVWKFE 373 WN ID+DG S W FE Sbjct: 93 WNHIDEDGKSHWVFE 107
>FA18B_MOUSE (Q9D8T4) Protein FAM18B| Length = 205 Score = 92.0 bits (227), Expect = 3e-19 Identities = 38/75 (50%), Positives = 51/75 (68%) Frame = +2 Query: 149 NPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRW 328 +P+ FH+ F+ SA+ Y+L L SF+ V +LL + DFW VKNV+GR++VGLRW Sbjct: 33 HPVASFFHLFFRVSAVVVYLLCELLSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRW 92 Query: 329 WNEIDDDGNSVWKFE 373 WN ID+DG S W FE Sbjct: 93 WNHIDEDGKSHWVFE 107
>FA18B_HUMAN (Q9NYZ1) Protein FAM18B| Length = 205 Score = 92.0 bits (227), Expect = 3e-19 Identities = 38/75 (50%), Positives = 51/75 (68%) Frame = +2 Query: 149 NPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRW 328 +P+ FH+ F+ SA+ Y+L L SF+ V +LL + DFW VKNV+GR++VGLRW Sbjct: 33 HPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRW 92 Query: 329 WNEIDDDGNSVWKFE 373 WN ID+DG S W FE Sbjct: 93 WNHIDEDGKSHWVFE 107
>FA18_DICDI (Q86I95) Hypothetical FAM18-like protein| Length = 198 Score = 90.1 bits (222), Expect = 1e-18 Identities = 43/89 (48%), Positives = 55/89 (61%) Frame = +2 Query: 107 GSMDRPQVVSENYANPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWV 286 G Q S +PI+ FH+ FK A+A +IL S FV+ F+I L +A DFWV Sbjct: 19 GQNSESQPQSNAPKHPISVFFHLFFKIVAVAIFILSSFVNIGFVLTFIIVTLSSAFDFWV 78 Query: 287 VKNVSGRILVGLRWWNEIDDDGNSVWKFE 373 KNV+GR LVGLRWWN+I +DG + W FE Sbjct: 79 TKNVTGRKLVGLRWWNQIKEDGTNNWVFE 107
>F18B2_HUMAN (Q96ET8) Protein FAM18B2| Length = 276 Score = 88.6 bits (218), Expect = 3e-18 Identities = 37/75 (49%), Positives = 50/75 (66%) Frame = +2 Query: 149 NPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRW 328 +P+ FH+ F+ SA+ +L L SF+ V +LL + DFW VKNV+GR++VGLRW Sbjct: 33 HPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRW 92 Query: 329 WNEIDDDGNSVWKFE 373 WN ID+DG S W FE Sbjct: 93 WNHIDEDGKSHWVFE 107
>YGI5_SCHPO (Q9Y7K7) Hypothetical protein C2A9.05c in chromosome II| Length = 219 Score = 85.5 bits (210), Expect = 3e-17 Identities = 37/76 (48%), Positives = 51/76 (67%) Frame = +2 Query: 146 ANPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLR 325 ++P+ F +LF+ A+ YIL F SF+++F++ L A+D W VKNVSGR+LVGLR Sbjct: 46 SHPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLR 105 Query: 326 WWNEIDDDGNSVWKFE 373 W NE DG S+W FE Sbjct: 106 WRNETGVDGESIWIFE 121
>TVP23_YEAST (P38962) TLG2-vesicle protein of 23 kDa| Length = 199 Score = 59.3 bits (142), Expect = 2e-09 Identities = 28/67 (41%), Positives = 44/67 (65%) Frame = +2 Query: 146 ANPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLR 325 ++P+ FH+ KA + FYI+ S+F+ +F F+ VLL + DF++ KN++GR LV LR Sbjct: 15 SHPLLLSFHLAGKAVPIVFYIIGSMFL-NFTPQFITVVLLLSFDFYLTKNITGRKLVQLR 73 Query: 326 WWNEIDD 346 WW + D Sbjct: 74 WWYDSTD 80
>BPH1_YEAST (P25356) Beige protein homolog 1| Length = 2167 Score = 31.6 bits (70), Expect = 0.49 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +2 Query: 125 QVVSENYANPITCLFHVLFKASALAFYILFSLFVKSFVIIFVITVL 262 Q+V N +NPITCL ++LFK L LF F K+ + ++T+L Sbjct: 728 QIVENNESNPITCL-NILFKV-VLTNKPLFKQFYKNDGLKLILTML 771
>NHX7_ARATH (Q9LKW9) Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7)| (NHE-7) (Protein SALT OVERLY SENSITIVE 1) Length = 1146 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = +2 Query: 236 VIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDD 349 V + VI + L +L++ N+ G+I G+R WNEID + Sbjct: 63 VALLVIGIALGSLEYGAKHNL-GKIGHGIRIWNEIDPE 99
>YLF3_CAEEL (Q03573) Hypothetical protein C40H1.3| Length = 504 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Frame = +1 Query: 10 AKEATKAQSWRILSTQGKKKEATERG--------VPEAEPRIHGSAPGGQRELCQSYNMP 165 +K T++ R++ T+ K + T + VPEA P + PGG Y MP Sbjct: 227 SKATTRSPERRVIPTEPSKPKTTRKNQRLSTIGHVPEAIPVVDTPLPGGSTVQDDPYKMP 286
>ADA2B_RAT (P19328) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) Length = 453 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = +2 Query: 185 ASALAFYILFSLFVKSFVIIFVIT--VLLAALDFWVVKNVSGRILV 316 ASA+ F ILF++F + VI+ V+T L A + ++V + ILV Sbjct: 21 ASAITFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILV 66
>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101| Length = 613 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +1 Query: 46 LSTQGKKKEATERGVPEAEPR-IHGSAPGGQRELCQSYNMPLPCA 177 LS ATE+ +P+ P +H Q L Q Y +P+P A Sbjct: 282 LSVPNGPMTATEQYMPQPAPAPVHAGPTPSQNPLAQQYYLPMPSA 326
>ADA2B_MOUSE (P30545) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) Length = 450 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = +2 Query: 185 ASALAFYILFSLFVKSFVIIFVIT--VLLAALDFWVVKNVSGRILV 316 ASA+ F ILF++F + VI+ V+T L A + ++V + ILV Sbjct: 16 ASAITFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILV 61
>PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101| Length = 618 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +1 Query: 46 LSTQGKKKEATERGVPEAEPR-IHGSAPGGQRELCQSYNMPLPCA 177 LS ATE+ +P+ P +H Q L Q Y +P+P A Sbjct: 287 LSVPNGPMTATEQYMPQPAPAPVHAGPTPSQNPLAQQYYLPMPSA 331
>YAM7_SCHPO (Q10062) Hypothetical protein C1F5.07c in chromosome I| Length = 490 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 263 LAALDFWVVKNVSGRILVGLRWWNEI 340 L +L W+ KN+ GRIL+ W+N + Sbjct: 441 LNSLKSWIEKNMGGRILLTGSWYNGV 466
>PE2R1_HUMAN (P34995) Prostaglandin E2 receptor, EP1 subtype (Prostanoid EP1| receptor) (PGE receptor, EP1 subtype) Length = 402 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Frame = -3 Query: 135 LTTWGRSMDPW--LCLRDASLCRLF-LLP--LGAKDAPA 34 L +W + +DPW + LR A L +L LLP GAK PA Sbjct: 339 LASWNQILDPWVYILLRQAVLRQLLRLLPPRAGAKGGPA 377
>PMIP_YEAST (P35999) Mitochondrial intermediate peptidase, mitochondrial| precursor (EC 3.4.24.59) (MIP) Length = 772 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -3 Query: 135 LTTWGRSMDPWLCLRDASLCRLFLLPLGAKDA 40 L WG DPW C+ D C +L G DA Sbjct: 733 LLKWGGLKDPWKCIADVLECP--MLEKGGSDA 762
>CYDC_ECOLI (P23886) Transport ATP-binding protein cydC| Length = 573 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = +2 Query: 209 LFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGL 322 + S V +FV+I V+T+ L+ LDF + + G +L+ L Sbjct: 137 VISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTL 174
>PE2R1_CANFA (Q9BGL8) Prostaglandin E2 receptor, EP1 subtype (Prostanoid EP1| receptor) (PGE receptor, EP1 subtype) Length = 403 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Frame = -3 Query: 135 LTTWGRSMDPW--LCLRDASLCRLF-LLP--LGAKDAPA 34 L +W + +DPW + LR A L +L LLP GAK +PA Sbjct: 340 LASWNQILDPWVYILLRQAVLRQLLRLLPPRPGAKGSPA 378
>NORM_VIBF1 (Q5E4Y6) Multidrug resistance protein norM (Na(+)/drug antiporter)| (Multidrug-efflux transporter) Length = 460 Score = 27.3 bits (59), Expect = 9.2 Identities = 8/23 (34%), Positives = 14/23 (60%) Frame = +3 Query: 294 MSAEGYWSGFVGGMRLTTMVTVC 362 M G+W GF+GG+ + ++ C Sbjct: 415 MGVYGFWFGFIGGLTTSAILLTC 437
>TILS_TREPA (O83388) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 477 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 136 RELCQSYNMPLPCALQGVGAG 198 R LC ++ PLPC +Q + AG Sbjct: 81 RALCARFSPPLPCFVQQISAG 101
>INVSB_XENLA (Q71S21) Inversin-B| Length = 1002 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 13 KEATKAQSWRILSTQGKKKEATE-RGVPEAEPRIHGSAPGGQRELCQSYNMPLPCALQG 186 KEA+ + R +GKKKE + R P+I GG +L QS + L +QG Sbjct: 781 KEASDSAIHR--EEEGKKKETKKGRRTVAVTPKIEACCKGGCGKLSQSEKVSLGIGIQG 837
>SULH_SCHPO (O74377) Probable sulfate permease C3H7.02| Length = 877 Score = 27.3 bits (59), Expect = 9.2 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = +2 Query: 158 TCLFHVLFKASALAFY--ILFSLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWW 331 T LF + AL F + S+F I+ L AAL + + SG L L+ Sbjct: 507 TLLFWRMQPLEALIFICAVFVSVFSSIENGIYTAVCLSAALLLFRIAKPSGSFLGILKIA 566 Query: 332 NEIDDDGNSV 361 N+ DDD NS+ Sbjct: 567 NKFDDDENSI 576 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,713,920 Number of Sequences: 219361 Number of extensions: 749577 Number of successful extensions: 3166 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3165 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
