ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd27n01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1353 Score = 391 bits (197), Expect = e-105 Identities = 374/433 (86%) Strand = Plus / Plus Query: 56 gctgttgcccagcaacctattagtgtaggaatatgtggcagcgctagagcgtttcagcta 115 |||||||| ||||||||| |||||||||||||||| || ||||||||||| |||||| | Sbjct: 751 gctgttgctcagcaacctgttagtgtaggaatatgcggtagcgctagagcatttcagttg 810 Query: 116 tactcccagggtatctttgatggtccgtgtccaacgtctcttgatcatgcagtcctaatt 175 |||||| |||||||||| |||||||| ||||| || |||||||||||||| | ||||| Sbjct: 811 tactccaagggtatcttcgatggtccatgtcctacatctcttgatcatgctatattaatt 870 Query: 176 gtgggatatggttctgaaggtggcaaggattattggattgtgaaaaattcttggggtgaa 235 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 871 gtgggatatggttctgaaggtggcaaggattactggattgtgaaaaattcttggggtgaa 930 Query: 236 agatggggaatgaagggctacatgcatatgcatagaaacactggctcatcgtcaggtatc 295 || ||||| ||||| ||||| ||| |||||||| |||||||||| || ||| || Sbjct: 931 agttggggtatgaaaggctatatgtatatgcatcgaaacactggtaactccaatggtgtc 990 Query: 296 tgtggcataaacatgatggcatcgttccctacaaaaacaagcccgaatcctcccccttca 355 |||||||||||| |||| | || |||||||| ||| |||||||||||||||| |||||| Sbjct: 991 tgtggcataaaccagatgccgtcattccctacgaaatcaagcccgaatcctcctccttca 1050 Query: 356 ccaggccctggcccaaccaaatgcagtgtttttacctcctgccctgaaggatccacctgc 415 ||||| || || |||||||||||||| || |||||| ||||||||||||||||||||| Sbjct: 1051 ccagggccaggtccaaccaaatgcagccttcttacctattgccctgaaggatccacctgc 1110 Query: 416 tgctgctcctggcgagccttgggattctgtctttcctggagctgctgtgaactagataat 475 |||||||||||||| | | |||| | || ||||||||||| || |||||||| ||||| Sbjct: 1111 tgctgctcctggcgtgtcctggggctatgcctttcctggagttgttgtgaactggataac 1170 Query: 476 gcagtttgctgca 488 ||||||||||||| Sbjct: 1171 gcagtttgctgca 1183
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 323 bits (163), Expect = 3e-85 Identities = 316/367 (86%) Strand = Plus / Plus Query: 122 cagggtatctttgatggtccgtgtccaacgtctcttgatcatgcagtcctaattgtggga 181 ||||||||||| |||||||| ||||| || |||||||||||||| | ||||||||||| Sbjct: 25038 cagggtatcttcgatggtccatgtcctacatctcttgatcatgctatattaattgtggga 25097 Query: 182 tatggttctgaaggtggcaaggattattggattgtgaaaaattcttggggtgaaagatgg 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 25098 tatggttctgaaggtggcaaggattactggattgtgaaaaattcttggggtgaaagttgg 25157 Query: 242 ggaatgaagggctacatgcatatgcatagaaacactggctcatcgtcaggtatctgtggc 301 || ||||| ||||| ||| |||||||| |||||||||| || ||| |||||||| Sbjct: 25158 ggtatgaaaggctatatgtatatgcatcgaaacactggtaactccaatggtgtctgtggc 25217 Query: 302 ataaacatgatggcatcgttccctacaaaaacaagcccgaatcctcccccttcaccaggc 361 |||||| |||| | || |||||||| ||| |||||||||||||||| ||||||||||| Sbjct: 25218 ataaaccagatgccgtcattccctacgaaatcaagcccgaatcctcctccttcaccaggg 25277 Query: 362 cctggcccaaccaaatgcagtgtttttacctcctgccctgaaggatccacctgctgctgc 421 || || |||||||||||||| || |||||| ||||||||||||||||||||||||||| Sbjct: 25278 ccaggtccaaccaaatgcagccttcttacctattgccctgaaggatccacctgctgctgc 25337 Query: 422 tcctggcgagccttgggattctgtctttcctggagctgctgtgaactagataatgcagtt 481 |||||||| | | |||| | || ||||||||||| || |||||||| ||||| |||||| Sbjct: 25338 tcctggcgtgtcctggggctatgcctttcctggagttgttgtgaactggataacgcagtt 25397 Query: 482 tgctgca 488 ||||||| Sbjct: 25398 tgctgca 25404 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 56 gctgttgcccagcaacctattagtgtaggaatatgtggcagcgctagagcgtttcagcta 115 |||||||| ||||||||| |||||||||||||||| || ||||||||||| |||||| | Sbjct: 24870 gctgttgctcagcaacctgttagtgtaggaatatgcggtagcgctagagcatttcagttg 24929 Query: 116 tactcc 121 |||||| Sbjct: 24930 tactcc 24935
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 323 bits (163), Expect = 3e-85 Identities = 316/367 (86%) Strand = Plus / Plus Query: 122 cagggtatctttgatggtccgtgtccaacgtctcttgatcatgcagtcctaattgtggga 181 ||||||||||| |||||||| ||||| || |||||||||||||| | ||||||||||| Sbjct: 24956185 cagggtatcttcgatggtccatgtcctacatctcttgatcatgctatattaattgtggga 24956244 Query: 182 tatggttctgaaggtggcaaggattattggattgtgaaaaattcttggggtgaaagatgg 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 24956245 tatggttctgaaggtggcaaggattactggattgtgaaaaattcttggggtgaaagttgg 24956304 Query: 242 ggaatgaagggctacatgcatatgcatagaaacactggctcatcgtcaggtatctgtggc 301 || ||||| ||||| ||| |||||||| |||||||||| || ||| |||||||| Sbjct: 24956305 ggtatgaaaggctatatgtatatgcatcgaaacactggtaactccaatggtgtctgtggc 24956364 Query: 302 ataaacatgatggcatcgttccctacaaaaacaagcccgaatcctcccccttcaccaggc 361 |||||| |||| | || |||||||| ||| |||||||||||||||| ||||||||||| Sbjct: 24956365 ataaaccagatgccgtcattccctacgaaatcaagcccgaatcctcctccttcaccaggg 24956424 Query: 362 cctggcccaaccaaatgcagtgtttttacctcctgccctgaaggatccacctgctgctgc 421 || || |||||||||||||| || |||||| ||||||||||||||||||||||||||| Sbjct: 24956425 ccaggtccaaccaaatgcagccttcttacctattgccctgaaggatccacctgctgctgc 24956484 Query: 422 tcctggcgagccttgggattctgtctttcctggagctgctgtgaactagataatgcagtt 481 |||||||| | | |||| | || ||||||||||| || |||||||| ||||| |||||| Sbjct: 24956485 tcctggcgtgtcctggggctatgcctttcctggagttgttgtgaactggataacgcagtt 24956544 Query: 482 tgctgca 488 ||||||| Sbjct: 24956545 tgctgca 24956551 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 56 gctgttgcccagcaacctattagtgtaggaatatgtggcagcgctagagcgtttcagcta 115 |||||||| ||||||||| |||||||||||||||| || ||||||||||| |||||| | Sbjct: 24956017 gctgttgctcagcaacctgttagtgtaggaatatgcggtagcgctagagcatttcagttg 24956076 Query: 116 tactcc 121 |||||| Sbjct: 24956077 tactcc 24956082
>gb|AY108327.1| Zea mays PCO144502 mRNA sequence Length = 896 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 398 cctgaaggatccacctgctgctgctcctggcgagccttgggattctgtctttcctggagc 457 ||||| ||||||||||| || ||||| ||||| | |||||| || || |||||||||||| Sbjct: 7 cctgagggatccacctgttgttgctcatggcgtgtcttgggcttttgcctttcctggagc 66 Query: 458 tgctgtgaactagataatgcagtttgctgca 488 || || ||||| || |||||||||||||||| Sbjct: 67 tgttgcgaactggacaatgcagtttgctgca 97
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence Length = 116601 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 218 aaaaattcttggggtgaaagatgggg 243 |||||||||||||||||||||||||| Sbjct: 70976 aaaaattcttggggtgaaagatgggg 71001
>ref|NM_100859.2| Arabidopsis thaliana XBCP3; cysteine-type endopeptidase/ cysteine-type peptidase AT1G09850 (XBCP3) mRNA, complete cds Length = 1638 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 203 gattattggattgtgaaaaattcttggggtgaaagatggggaatg 247 |||||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 923 gattattggattgtgaaaaactcatggggaaaaagttggggaatg 967
>gb|AF388175.1|AF388175 Arabidopsis thaliana papain-like cysteine peptidase XBCP3 mRNA, complete cds Length = 1638 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 203 gattattggattgtgaaaaattcttggggtgaaagatggggaatg 247 |||||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 923 gattattggattgtgaaaaactcatggggaaaaagttggggaatg 967
>emb|BX813678.1|CNS0AC25 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB32ZA10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1484 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 203 gattattggattgtgaaaaattcttggggtgaaagatggggaatg 247 |||||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 903 gattattggattgtgaaaaactcatggggaaaaagttggggaatg 947
>gb|AF133838.1| Sandersonia aurantiaca papain-like cysteine protease (PRT15) mRNA, partial cds Length = 1456 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 174 ttgtgggatatggttctgaaggtggcaaggattattggattgtgaaaaattcttggggtg 233 ||||||| ||||||||||| |||||||||| || |||||||| | ||| || ||||||| Sbjct: 614 ttgtgggctatggttctgagagtggcaaggactactggattgttagaaactcatggggtg 673 Query: 234 a 234 | Sbjct: 674 a 674
>gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete sequence Length = 146505 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 203 gattattggattgtgaaaaattcttggggtgaaagatggggaatg 247 |||||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 90235 gattattggattgtgaaaaactcatggggaaaaagttggggaatg 90279
>gb|DQ455294.1| Medicago truncatula cDNA-AFLP fragment BT11M44_227 sequence Length = 481 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 203 gattattggattgtgaaaaattcttggggtg 233 |||||||||||||||| |||||| ||||||| Sbjct: 357 gattattggattgtgagaaattcatggggtg 387
>gb|AC148098.3| Medicago truncatula clone mth2-15b16, complete sequence Length = 97953 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 203 gattattggattgtgaaaaattcttggggtg 233 |||||||||||||||| |||||| ||||||| Sbjct: 71115 gattattggattgtgagaaattcatggggtg 71085
>gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-29a5, complete sequence Length = 124676 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 203 gattattggattgtgaaaaattcttggggtg 233 |||||||||||||||| |||||| ||||||| Sbjct: 82404 gattattggattgtgagaaattcatggggtg 82374
>emb|AJ245924.1|STU245924 Solanum tuberosum mRNA for cysteine protease (cyp gene) Length = 1755 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Plus Query: 179 ggatatggttctgaaggtggcaaggattattggattgt 216 |||||||||||||| ||||| ||||||||||||||| Sbjct: 910 ggatatggttctgagaatggcatggattattggattgt 947
>gb|AC160873.4| Colobus guereza clone CH272-426J14, complete sequence Length = 196315 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 gaaagatggggaatgaagggc 253 ||||||||||||||||||||| Sbjct: 49811 gaaagatggggaatgaagggc 49791
>gb|AC009844.7| Drosophila melanogaster clone BACR01L16, complete sequence Length = 168238 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 ataaacatgatggcatcgttc 322 ||||||||||||||||||||| Sbjct: 70535 ataaacatgatggcatcgttc 70555
>gb|AC146188.3| Pan troglodytes BAC clone RP43-35J3 from 7, complete sequence Length = 161143 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 actactagctgttgcccagca 69 ||||||||||||||||||||| Sbjct: 117689 actactagctgttgcccagca 117709
>emb|AL158068.18| Human DNA sequence from clone RP11-478C1 on chromosome 4, complete sequence Length = 178338 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aggtggcaaggattattggat 213 ||||||||||||||||||||| Sbjct: 121307 aggtggcaaggattattggat 121327
>gb|AC020633.3| Homo sapiens 3 BAC RP11-65E22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148244 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 ttctagcaaggaagacttgtt 48 ||||||||||||||||||||| Sbjct: 48297 ttctagcaaggaagacttgtt 48277
>emb|CR749640.1| Homo sapiens mRNA; cDNA DKFZp686I1868 (from clone DKFZp686I1868) Length = 5621 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aggtggcaaggattattggat 213 ||||||||||||||||||||| Sbjct: 5268 aggtggcaaggattattggat 5288
>ref|NM_137164.2| Drosophila melanogaster CG10257-RA (CG10257), mRNA Length = 1161 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 ataaacatgatggcatcgttc 322 ||||||||||||||||||||| Sbjct: 916 ataaacatgatggcatcgttc 936
>gb|AY094933.1| Drosophila melanogaster RH51312 full insert cDNA Length = 1180 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 ataaacatgatggcatcgttc 322 ||||||||||||||||||||| Sbjct: 916 ataaacatgatggcatcgttc 936
>gb|DQ060036.1| Homo sapiens polymerase (DNA directed) nu (POLN) gene, complete cds Length = 161222 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aggtggcaaggattattggat 213 ||||||||||||||||||||| Sbjct: 2499 aggtggcaaggattattggat 2519
>dbj|AK193719.1| Mus musculus cDNA, clone:Y1G0113C17, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000049460, based on BLAT search Length = 413 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 394 ctgccctgaaggatccacctgctgc 418 |||||||||||||| |||||||||| Sbjct: 387 ctgccctgaaggatacacctgctgc 411
>gb|AE003812.4| Drosophila melanogaster chromosome 2R, section 38 of 73 of the complete sequence Length = 255772 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 ataaacatgatggcatcgttc 322 ||||||||||||||||||||| Sbjct: 46378 ataaacatgatggcatcgttc 46398
>emb|Z49918.1|HSL124H12 Human DNA sequence from clone LA04NC01-124H12 on chromosome 4, complete sequence Length = 30110 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aggtggcaaggattattggat 213 ||||||||||||||||||||| Sbjct: 1374 aggtggcaaggattattggat 1394
>ref|NM_024511.4| Homo sapiens chromosome 4 open reading frame 15 (C4orf15), mRNA Length = 5621 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aggtggcaaggattattggat 213 ||||||||||||||||||||| Sbjct: 5268 aggtggcaaggattattggat 5288
>ref|XM_630325.1| Dictyostelium discoideum cysteine proteinase 1 (DDB0201647), partial mRNA Length = 1032 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 206 tattggattgtgaaaaattcttggggtg 233 ||||||||||| || ||||||||||||| Sbjct: 916 tattggattgtaaagaattcttggggtg 943
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 cctgctgctgctcctggcga 430 |||||||||||||||||||| Sbjct: 130475 cctgctgctgctcctggcga 130494
>gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromosome 7, complete sequence Length = 170021 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ttctgtctttcctggagctg 459 |||||||||||||||||||| Sbjct: 25538 ttctgtctttcctggagctg 25557
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 ctgctgctcctggcgagcct 434 |||||||||||||||||||| Sbjct: 2565838 ctgctgctcctggcgagcct 2565819
>gb|AY159378.1| Leptinotarsa decemlineata clone IntC4 digestive cysteine protease intestain mRNA, partial cds Length = 305 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 179 ggatatggttctgaaggtggcaaggattattggattgtgaaaaattcttggggtga 234 ||||||||||| ||| ||| || ||||| ||||||||||| || || |||||||| Sbjct: 50 ggatatggttcacaagatggtaaagattactggattgtgaagaactcctggggtga 105
>gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromosome 7, complete sequence Length = 232604 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ttctgtctttcctggagctg 459 |||||||||||||||||||| Sbjct: 166690 ttctgtctttcctggagctg 166709
>ref|XM_858302.1| PREDICTED: Canis familiaris similar to Forkhead box protein P1, transcript variant 9 (LOC484692), mRNA Length = 2482 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ccacctgctgctgctcctgg 427 |||||||||||||||||||| Sbjct: 229 ccacctgctgctgctcctgg 210
>gb|AC127690.4| Mus musculus BAC clone RP24-215A3 from chromosome 17, complete sequence Length = 187751 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 cacctgctgctgctcctggc 428 |||||||||||||||||||| Sbjct: 110603 cacctgctgctgctcctggc 110584
>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence Length = 213676 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tacatgcatatgcatagaaa 273 |||||||||||||||||||| Sbjct: 43250 tacatgcatatgcatagaaa 43231
>gb|AC140034.14| Medicago truncatula clone mth2-17g19, complete sequence Length = 83825 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 206 tattggattgtgaaaaattcttggggtg 233 |||||||||||||| ||||| ||||||| Sbjct: 23149 tattggattgtgaagaattcatggggtg 23176
>emb|X02407.1|DDCPRO1R D.discoideum mRNA for cysteine proteinase 1 Length = 1125 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 206 tattggattgtgaaaaattcttggggtg 233 ||||||||||| || ||||||||||||| Sbjct: 916 tattggattgtaaagaattcttggggtg 943
>emb|BX571864.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 6/17 Length = 349071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tattggattgtgaaaaattc 225 |||||||||||||||||||| Sbjct: 171509 tattggattgtgaaaaattc 171528
>emb|AL663103.4| Mouse DNA sequence from clone RP23-267D13 on chromosome 11, complete sequence Length = 238478 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tccacctgctgctgctcctg 426 |||||||||||||||||||| Sbjct: 45932 tccacctgctgctgctcctg 45951
>dbj|AK125802.1| Homo sapiens cDNA FLJ43814 fis, clone TESTI4001473 Length = 3510 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tacatgcatatgcatagaaa 273 |||||||||||||||||||| Sbjct: 678 tacatgcatatgcatagaaa 697
>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence Length = 163642 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tacatgcatatgcatagaaa 273 |||||||||||||||||||| Sbjct: 100161 tacatgcatatgcatagaaa 100180
>gb|AC021460.10| Homo sapiens chromosome 15, clone RP11-259F15, complete sequence Length = 146698 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tacatgcatatgcatagaaa 273 |||||||||||||||||||| Sbjct: 93770 tacatgcatatgcatagaaa 93751
>dbj|AK153470.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830164F07 product:granulin, full insert sequence Length = 2145 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 394 ctgccctgaaggatccacctgctgctgc 421 |||||||||||||| |||||||||||| Sbjct: 903 ctgccctgaaggatatacctgctgctgc 930
>gb|AC032011.15| Homo sapiens chromosome 15, clone RP11-435J9, complete sequence Length = 201200 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tacatgcatatgcatagaaa 273 |||||||||||||||||||| Sbjct: 197303 tacatgcatatgcatagaaa 197284
>gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromosome 7, complete sequence Length = 154596 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ttctgtctttcctggagctg 459 |||||||||||||||||||| Sbjct: 26201 ttctgtctttcctggagctg 26220
>gb|AC005154.1| Homo sapiens PAC clone RP4-777O23 from 7, complete sequence Length = 151630 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tacatgcatatgcatagaaa 273 |||||||||||||||||||| Sbjct: 73502 tacatgcatatgcatagaaa 73521
>gb|AC158516.2| Mus musculus BAC clone RP24-511A23 from chromosome 9, complete sequence Length = 167046 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 cttgggattctgtctttcct 452 |||||||||||||||||||| Sbjct: 129116 cttgggattctgtctttcct 129097
>gb|AC010085.3|AC010085 Homo sapiens BAC clone RP11-168P10 from 7, complete sequence Length = 121912 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ttctgtctttcctggagctg 459 |||||||||||||||||||| Sbjct: 10942 ttctgtctttcctggagctg 10923
>gb|AF454958.1| Brassica oleracea senescence-associated cysteine protease (CP3) mRNA, complete cds Length = 1830 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 196 tggcaaggattattggattgtgaaaaattcttgggg 231 |||||| || ||||||||||||||||| || ||||| Sbjct: 932 tggcaaagactattggattgtgaaaaactcatgggg 967
>gb|AE001272.1|AE001272 Lactococcus lactis DPC3147 plasmid pMRC01, complete plasmid sequence Length = 60232 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 tgaactagataatgcagttt 482 |||||||||||||||||||| Sbjct: 4765 tgaactagataatgcagttt 4784
>gb|AC005401.1|AC005401 Homo sapiens clone UWGC:g3586a297 from 7p14-15, complete sequence Length = 44406 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ttctgtctttcctggagctg 459 |||||||||||||||||||| Sbjct: 35579 ttctgtctttcctggagctg 35598
>gb|AC126323.6| Homo sapiens chromosome 15, clone RP11-299H22, complete sequence Length = 170132 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tacatgcatatgcatagaaa 273 |||||||||||||||||||| Sbjct: 126302 tacatgcatatgcatagaaa 126321 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,124,070 Number of Sequences: 3902068 Number of extensions: 5124070 Number of successful extensions: 96842 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96686 Number of HSP's gapped (non-prelim): 153 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
