| Clone Name | basd27m18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466696.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2870 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 33 tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92 |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| Sbjct: 1132 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 1191 Query: 93 gc 94 || Sbjct: 1192 gc 1193
>dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mRNA for BRI1-KD interacting protein 135, partial cds Length = 1850 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 33 tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92 |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| Sbjct: 84 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 143 Query: 93 gc 94 || Sbjct: 144 gc 145
>dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I24, full insert sequence Length = 2870 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 33 tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92 |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| Sbjct: 1132 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 1191 Query: 93 gc 94 || Sbjct: 1192 gc 1193
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 33 tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92 |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| Sbjct: 24163367 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 24163308 Query: 93 g 93 | Sbjct: 24163307 g 24163307
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 33 tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92 |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| Sbjct: 122108 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 122049 Query: 93 g 93 | Sbjct: 122048 g 122048
>ref|XM_473064.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2541 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Plus Query: 626 aaaaagactggtgaaggagaatcatcaaagaaga 659 ||||||||||||||||| ||||| || ||||||| Sbjct: 1516 aaaaagactggtgaaggggaatcttcgaagaaga 1549
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Minus Query: 626 aaaaagactggtgaaggagaatcatcaaagaaga 659 ||||||||||||||||| ||||| || ||||||| Sbjct: 137842 aaaaagactggtgaaggggaatcttcgaagaaga 137809
>emb|AL021938.1|HS232K4 Human DNA sequence from clone RP1-232K4 on chromosome 6p22.3 Contains the 3'end of the JMJ gene for jumonji protein and 2 CpG islands, complete sequence Length = 198161 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 565 tatggattcaactgggaagtta 586 |||||||||||||||||||||| Sbjct: 170832 tatggattcaactgggaagtta 170811
>emb|AL929036.8| Mouse DNA sequence from clone RP24-548P4 on chromosome 2, complete sequence Length = 100285 Score = 44.1 bits (22), Expect = 0.67 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 gtcaccaaaaggaccagcgtcaccaa 158 ||||||||||||||||| |||||||| Sbjct: 73051 gtcaccaaaaggaccagtgtcaccaa 73076 Score = 44.1 bits (22), Expect = 0.67 Identities = 25/26 (96%) Strand = Plus / Plus Query: 151 gtcaccaaaaggaccagcgtcaccaa 176 ||||||||||||||||| |||||||| Sbjct: 73051 gtcaccaaaaggaccagtgtcaccaa 73076
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Minus Query: 626 aaaaagactggtgaaggagaatcatcaaagaaga 659 ||||||||||||||||| ||||| || ||||||| Sbjct: 25017257 aaaaagactggtgaaggggaatcttcgaagaaga 25017224
>dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E10, full insert sequence Length = 2250 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Plus Query: 626 aaaaagactggtgaaggagaatcatcaaagaaga 659 ||||||||||||||||| ||||| || ||||||| Sbjct: 871 aaaaagactggtgaaggggaatcttcgaagaaga 904
>dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D11, full insert sequence Length = 3038 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Plus Query: 626 aaaaagactggtgaaggagaatcatcaaagaaga 659 ||||||||||||||||| ||||| || ||||||| Sbjct: 1669 aaaaagactggtgaaggggaatcttcgaagaaga 1702
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Minus Query: 626 aaaaagactggtgaaggagaatcatcaaagaaga 659 ||||||||||||||||| ||||| || ||||||| Sbjct: 145492 aaaaagactggtgaaggggaatcttcgaagaaga 145459
>gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, complete sequence Length = 182043 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 632 actggtgaaggagaatcatca 652 ||||||||||||||||||||| Sbjct: 47732 actggtgaaggagaatcatca 47752
>emb|AL596112.3| Human DNA sequence from clone RP11-183D15 on chromosome 6, complete sequence Length = 73908 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 aacctgttgatgcaaagccca 269 ||||||||||||||||||||| Sbjct: 41558 aacctgttgatgcaaagccca 41578
>gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, complete sequence Length = 208060 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 actggtgaaggagaatcatca 652 ||||||||||||||||||||| Sbjct: 105903 actggtgaaggagaatcatca 105883 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,214,962 Number of Sequences: 3902068 Number of extensions: 7214962 Number of successful extensions: 136043 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135932 Number of HSP's gapped (non-prelim): 111 length of query: 762 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 739 effective length of database: 17,143,297,704 effective search space: 12668897003256 effective search space used: 12668897003256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)