ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466696.1| Oryza sativa (japonica cultivar-group), mRNA 76 2e-10
2dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mR... 76 2e-10
3dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
5dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
6ref|XM_473064.1| Oryza sativa (japonica cultivar-group), predic... 44 0.67
7emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.67
8emb|AL021938.1|HS232K4 Human DNA sequence from clone RP1-232K4 o... 44 0.67
9emb|AL929036.8| Mouse DNA sequence from clone RP24-548P4 on chro... 44 0.67
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.67
11dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.67
12dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.67
13emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.67
14gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, co... 42 2.6
15emb|AL596112.3| Human DNA sequence from clone RP11-183D15 on chr... 42 2.6
16gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, com... 42 2.6

>ref|XM_466696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2870

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                        
Query: 33   tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92
            |||||||||||| |||||  |||||||||||| |||||||||||||||  ||||||||||
Sbjct: 1132 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 1191

              
Query: 93   gc 94
            ||
Sbjct: 1192 gc 1193



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>dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mRNA for BRI1-KD
           interacting protein 135, partial cds
          Length = 1850

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 33  tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92
           |||||||||||| |||||  |||||||||||| |||||||||||||||  ||||||||||
Sbjct: 84  tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 143

             
Query: 93  gc 94
           ||
Sbjct: 144 gc 145



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>dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I24, full
            insert sequence
          Length = 2870

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                        
Query: 33   tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92
            |||||||||||| |||||  |||||||||||| |||||||||||||||  ||||||||||
Sbjct: 1132 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 1191

              
Query: 93   gc 94
            ||
Sbjct: 1192 gc 1193



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                            
Query: 33       tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92
                |||||||||||| |||||  |||||||||||| |||||||||||||||  ||||||||||
Sbjct: 24163367 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 24163308

                 
Query: 93       g 93
                |
Sbjct: 24163307 g 24163307



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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A05
          Length = 174290

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                          
Query: 33     tggagcaagatggtactccaactactgctatttgcagtggtgcaactctggttgataatg 92
              |||||||||||| |||||  |||||||||||| |||||||||||||||  ||||||||||
Sbjct: 122108 tggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatg 122049

               
Query: 93     g 93
              |
Sbjct: 122048 g 122048



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>ref|XM_473064.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2541

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 626  aaaaagactggtgaaggagaatcatcaaagaaga 659
            ||||||||||||||||| ||||| || |||||||
Sbjct: 1516 aaaaagactggtgaaggggaatcttcgaagaaga 1549



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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
              complete sequence
          Length = 173171

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 626    aaaaagactggtgaaggagaatcatcaaagaaga 659
              ||||||||||||||||| ||||| || |||||||
Sbjct: 137842 aaaaagactggtgaaggggaatcttcgaagaaga 137809



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>emb|AL021938.1|HS232K4 Human DNA sequence from clone RP1-232K4 on chromosome 6p22.3 Contains the
              3'end of the JMJ gene for jumonji protein and 2 CpG
              islands, complete sequence
          Length = 198161

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 565    tatggattcaactgggaagtta 586
              ||||||||||||||||||||||
Sbjct: 170832 tatggattcaactgggaagtta 170811



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>emb|AL929036.8| Mouse DNA sequence from clone RP24-548P4 on chromosome 2, complete
             sequence
          Length = 100285

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 133   gtcaccaaaaggaccagcgtcaccaa 158
             ||||||||||||||||| ||||||||
Sbjct: 73051 gtcaccaaaaggaccagtgtcaccaa 73076



 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 151   gtcaccaaaaggaccagcgtcaccaa 176
             ||||||||||||||||| ||||||||
Sbjct: 73051 gtcaccaaaaggaccagtgtcaccaa 73076



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 626      aaaaagactggtgaaggagaatcatcaaagaaga 659
                ||||||||||||||||| ||||| || |||||||
Sbjct: 25017257 aaaaagactggtgaaggggaatcttcgaagaaga 25017224



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>dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E10, full
           insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 626 aaaaagactggtgaaggagaatcatcaaagaaga 659
           ||||||||||||||||| ||||| || |||||||
Sbjct: 871 aaaaagactggtgaaggggaatcttcgaagaaga 904



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>dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D11, full
            insert sequence
          Length = 3038

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 626  aaaaagactggtgaaggagaatcatcaaagaaga 659
            ||||||||||||||||| ||||| || |||||||
Sbjct: 1669 aaaaagactggtgaaggggaatcttcgaagaaga 1702



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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
              sequence
          Length = 148644

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 626    aaaaagactggtgaaggagaatcatcaaagaaga 659
              ||||||||||||||||| ||||| || |||||||
Sbjct: 145492 aaaaagactggtgaaggggaatcttcgaagaaga 145459



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>gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, complete sequence
          Length = 182043

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 632   actggtgaaggagaatcatca 652
             |||||||||||||||||||||
Sbjct: 47732 actggtgaaggagaatcatca 47752



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>emb|AL596112.3| Human DNA sequence from clone RP11-183D15 on chromosome 6, complete
             sequence
          Length = 73908

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 249   aacctgttgatgcaaagccca 269
             |||||||||||||||||||||
Sbjct: 41558 aacctgttgatgcaaagccca 41578



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>gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, complete sequence
          Length = 208060

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 632    actggtgaaggagaatcatca 652
              |||||||||||||||||||||
Sbjct: 105903 actggtgaaggagaatcatca 105883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,214,962
Number of Sequences: 3902068
Number of extensions: 7214962
Number of successful extensions: 136043
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135932
Number of HSP's gapped (non-prelim): 111
length of query: 762
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 739
effective length of database: 17,143,297,704
effective search space: 12668897003256
effective search space used: 12668897003256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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