ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27m16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473074.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1419 Score = 371 bits (187), Expect = 2e-99 Identities = 316/359 (88%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacaga 322 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 688 ggggagatagacaaagaagagttcaagaaagtaatggcactgatgcgatcctataacaga 747 Query: 323 caaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaa 382 |||||||| ||| || |||||||||||||| ||| | |||||||| ||| |||||||| Sbjct: 748 caaggagccaaccatagagatggcttacgtactggactaaaagttggtcagcctgtggaa 807 Query: 383 aatggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgat 442 |||||||| || ||||| || |||||||||| ||||||||| ||||||||||||| ||| Sbjct: 808 aatggtggagtggttgaatacttctttggtaatgatgggaacgaacctctacactatgac 867 Query: 443 aagttcacaagttttttgaaggaattgcatgaagagattattcgtctggaattcagtcat 502 ||||| |||| ||||||||| | ||||||||| ||||| |||||||||||||||||||| Sbjct: 868 aagtttacaaattttttgaaaggattgcatgacgagatcattcgtctggaattcagtcac 927 Query: 503 tatgatgtcaattcgacaaacactatcccagcaaaggattttgcactgtccatggtggct 562 ||||| ||||| || | || |||||||||||||||||||| ||| | |||||||| ||| Sbjct: 928 tatgacgtcaagtcatctaatactatcccagcaaaggatttcgcattatccatggttgct 987 Query: 563 tctgctgacatgaatcacattagcaagctacttgatagagctgatacattgggcaatga 621 |||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||| Sbjct: 988 tctgctgacatgaatcacatcaacaagctacttgatagagttgataatttaggcaatga 1046 Score = 167 bits (84), Expect = 5e-38 Identities = 135/152 (88%) Strand = Plus / Plus Query: 19 agagttgcattgtgctccatccaaattcttcgtcctgtttgacacaaacaccgatggtct 78 ||||||||| ||||||||||| | |||||| | ||||||||||||||| ||| | || Sbjct: 531 agagttgcactgtgctccatcggagttcttcatgctgtttgacacaaacggtgataggct 590 Query: 79 catctcgtttgccgagtacatcttttttgttacattactcagcattcctgagtcaagctt 138 |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct: 591 catctcctttgccgagtacatcttttttgtgacattgctcagcatccctgagtcaagttt 650 Query: 139 cagtgcggccttcaaaatgtttgacgtcgacc 170 ||||||||||||||||||||||||||| |||| Sbjct: 651 cagtgcggccttcaaaatgtttgacgttgacc 682
>dbj|AK059306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G01, full insert sequence Length = 1800 Score = 371 bits (187), Expect = 2e-99 Identities = 316/359 (88%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacaga 322 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 836 ggggagatagacaaagaagagttcaagaaagtaatggcactgatgcgatcctataacaga 895 Query: 323 caaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaa 382 |||||||| ||| || |||||||||||||| ||| | |||||||| ||| |||||||| Sbjct: 896 caaggagccaaccatagagatggcttacgtactggactaaaagttggtcagcctgtggaa 955 Query: 383 aatggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgat 442 |||||||| || ||||| || |||||||||| ||||||||| ||||||||||||| ||| Sbjct: 956 aatggtggagtggttgaatacttctttggtaatgatgggaacgaacctctacactatgac 1015 Query: 443 aagttcacaagttttttgaaggaattgcatgaagagattattcgtctggaattcagtcat 502 ||||| |||| ||||||||| | ||||||||| ||||| |||||||||||||||||||| Sbjct: 1016 aagtttacaaattttttgaaaggattgcatgacgagatcattcgtctggaattcagtcac 1075 Query: 503 tatgatgtcaattcgacaaacactatcccagcaaaggattttgcactgtccatggtggct 562 ||||| ||||| || | || |||||||||||||||||||| ||| | |||||||| ||| Sbjct: 1076 tatgacgtcaagtcatctaatactatcccagcaaaggatttcgcattatccatggttgct 1135 Query: 563 tctgctgacatgaatcacattagcaagctacttgatagagctgatacattgggcaatga 621 |||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||| Sbjct: 1136 tctgctgacatgaatcacatcaacaagctacttgatagagttgataatttaggcaatga 1194 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 19 agagttgcattgtgctccatccaaattcttcgtcctgtttgacacaaacaccgatggtct 78 ||||||||| ||||||||||| | |||||| | ||||||||||||||| ||| | || Sbjct: 679 agagttgcactgtgctccatcggagttcttcatgctgtttgacacaaacggtgataggct 738 Query: 79 catctcgtttgccgagtacatcttttttgttacattactcagcattcctgagtcaagctt 138 |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct: 739 catctcctttgccgagtacatcttttttgtgacattgctcagcatccctgagtcaagttt 798 Query: 139 cagtgcggccttcaaaatgtttgacgtcgacc 170 ||||||||||||| ||||||||||||| |||| Sbjct: 799 cagtgcggccttcgaaatgtttgacgttgacc 830
>dbj|AK059708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-E06, full insert sequence Length = 2039 Score = 369 bits (186), Expect = 7e-99 Identities = 315/358 (87%) Strand = Plus / Plus Query: 264 gggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacagac 323 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 1070 gggagatagacaaagaagagttcaagaaagtaatggcactgatgcgatcctataacagac 1129 Query: 324 aaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaaa 383 ||||||| ||| || |||||||||||||| ||| | |||||||| ||| ||||||||| Sbjct: 1130 aaggagccaaccatagagatggcttacgtactggactaaaagttggtcagcctgtggaaa 1189 Query: 384 atggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgata 443 ||||||| || ||||| || |||||||||| ||||||||| ||||||||||||| ||| | Sbjct: 1190 atggtggagtggttgaatacttctttggtaatgatgggaacgaacctctacactatgaca 1249 Query: 444 agttcacaagttttttgaaggaattgcatgaagagattattcgtctggaattcagtcatt 503 |||| |||| ||||||||| | ||||||||| ||||| |||||||||||||||||||| | Sbjct: 1250 agtttacaaattttttgaaaggattgcatgacgagatcattcgtctggaattcagtcact 1309 Query: 504 atgatgtcaattcgacaaacactatcccagcaaaggattttgcactgtccatggtggctt 563 |||| ||||| || | || |||||||||||||||||||| ||| | |||||||| |||| Sbjct: 1310 atgacgtcaagtcatctaatactatcccagcaaaggatttcgcattatccatggttgctt 1369 Query: 564 ctgctgacatgaatcacattagcaagctacttgatagagctgatacattgggcaatga 621 ||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||| Sbjct: 1370 ctgctgacatgaatcacatcaacaagctacttgatagagttgataatttaggcaatga 1427 Score = 167 bits (84), Expect = 5e-38 Identities = 135/152 (88%) Strand = Plus / Plus Query: 19 agagttgcattgtgctccatccaaattcttcgtcctgtttgacacaaacaccgatggtct 78 ||||||||| ||||||||||| | |||||| | ||||||||||||||| ||| | || Sbjct: 332 agagttgcactgtgctccatcggagttcttcatgctgtttgacacaaacggtgataggct 391 Query: 79 catctcgtttgccgagtacatcttttttgttacattactcagcattcctgagtcaagctt 138 |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct: 392 catctcctttgccgagtacatcttttttgtgacattgctcagcatccctgagtcaagttt 451 Query: 139 cagtgcggccttcaaaatgtttgacgtcgacc 170 ||||||||||||||||||||||||||| |||| Sbjct: 452 cagtgcggccttcaaaatgtttgacgttgacc 483 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 233 catctggcttgttagttgatggtaaaagaaggg 265 |||||| |||||||||||||||||||||||||| Sbjct: 969 catctgacttgttagttgatggtaaaagaaggg 1001
>dbj|AK099122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039L05, full insert sequence Length = 1796 Score = 363 bits (183), Expect = 5e-97 Identities = 315/359 (87%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacaga 322 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 827 ggggagatagacaaagaagagttcaagaaagtaatggcactgatgcgatcctataacaga 886 Query: 323 caaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaa 382 |||||||| ||| || |||||||||||||| ||| | ||||||| ||| |||||||| Sbjct: 887 caaggagccaaccatagagatggcttacgtactggactagaagttggtcagcctgtggaa 946 Query: 383 aatggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgat 442 |||||||| || ||||| || |||||||||| ||||||||| ||||||||||||| ||| Sbjct: 947 aatggtggagtggttgaatacttctttggtaatgatgggaacgaacctctacactatgac 1006 Query: 443 aagttcacaagttttttgaaggaattgcatgaagagattattcgtctggaattcagtcat 502 ||||| |||| ||||||||| | ||||||||| ||||| |||||||||||||||||||| Sbjct: 1007 aagtttacaaattttttgaaaggattgcatgacgagatcattcgtctggaattcagtcac 1066 Query: 503 tatgatgtcaattcgacaaacactatcccagcaaaggattttgcactgtccatggtggct 562 ||||| ||||| || | || |||||||||||||||||||| ||| | |||||||| ||| Sbjct: 1067 tatgacgtcaagtcatctaatactatcccagcaaaggatttcgcattatccatggttgct 1126 Query: 563 tctgctgacatgaatcacattagcaagctacttgatagagctgatacattgggcaatga 621 |||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||| Sbjct: 1127 tctgctgacatgaatcacatcaacaagctacttgatagagttgataatttaggcaatga 1185 Score = 167 bits (84), Expect = 5e-38 Identities = 135/152 (88%) Strand = Plus / Plus Query: 19 agagttgcattgtgctccatccaaattcttcgtcctgtttgacacaaacaccgatggtct 78 ||||||||| ||||||||||| | |||||| | ||||||||||||||| ||| | || Sbjct: 670 agagttgcactgtgctccatcggagttcttcatgctgtttgacacaaacggtgataggct 729 Query: 79 catctcgtttgccgagtacatcttttttgttacattactcagcattcctgagtcaagctt 138 |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct: 730 catctcctttgccgagtacatcttttttgtgacattgctcagcatccctgagtcaagttt 789 Query: 139 cagtgcggccttcaaaatgtttgacgtcgacc 170 ||||||||||||||||||||||||||| |||| Sbjct: 790 cagtgcggccttcaaaatgtttgacgttgacc 821
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 228 bits (115), Expect = 2e-56 Identities = 187/211 (88%) Strand = Plus / Plus Query: 264 gggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacagac 323 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 25088592 gggagatagacaaagaagagttcaagaaagtaatggcactgatgcgatcctataacagac 25088651 Query: 324 aaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaaa 383 ||||||| ||| || |||||||||||||| ||| | |||||||| ||| ||||||||| Sbjct: 25088652 aaggagccaaccatagagatggcttacgtactggactaaaagttggtcagcctgtggaaa 25088711 Query: 384 atggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgata 443 ||||||| || ||||| || |||||||||| ||||||||| ||||||||||||| ||| | Sbjct: 25088712 atggtggagtggttgaatacttctttggtaatgatgggaacgaacctctacactatgaca 25088771 Query: 444 agttcacaagttttttgaaggaattgcatga 474 |||| |||| ||||||||| | ||||||||| Sbjct: 25088772 agtttacaaattttttgaaaggattgcatga 25088802 Score = 145 bits (73), Expect = 2e-31 Identities = 127/145 (87%) Strand = Plus / Plus Query: 477 agattattcgtctggaattcagtcattatgatgtcaattcgacaaacactatcccagcaa 536 |||| |||||||||||||||||||| ||||| ||||| || | || ||||||||||||| Sbjct: 25089250 agatcattcgtctggaattcagtcactatgacgtcaagtcatctaatactatcccagcaa 25089309 Query: 537 aggattttgcactgtccatggtggcttctgctgacatgaatcacattagcaagctacttg 596 ||||||| ||| | |||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct: 25089310 aggatttcgcattatccatggttgcttctgctgacatgaatcacatcaacaagctacttg 25089369 Query: 597 atagagctgatacattgggcaatga 621 |||||| ||||| || |||||||| Sbjct: 25089370 atagagttgataatttaggcaatga 25089394 Score = 113 bits (57), Expect = 7e-22 Identities = 72/77 (93%) Strand = Plus / Plus Query: 94 gtacatcttttttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaa 153 ||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct: 25087929 gtacatcttttttgtgacattgctcagcatccctgagtcaagtttcagtgcggccttcaa 25087988 Query: 154 aatgtttgacgtcgacc 170 |||||||||||| |||| Sbjct: 25087989 aatgtttgacgttgacc 25088005 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 19 agagttgcattgtgctccatccaaattcttcgtcctgtttgacacaaacaccgatggtct 78 ||||||||| ||||||||||| | |||||| | ||||||||||||||| ||| | || Sbjct: 25087607 agagttgcactgtgctccatcggagttcttcatgctgtttgacacaaacggtgataggct 25087666 Query: 79 catctcgtttgccgagta 96 |||||| ||||||||||| Sbjct: 25087667 catctcctttgccgagta 25087684 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 233 catctggcttgttagttgatggtaaaagaaggg 265 |||||| |||||||||||||||||||||||||| Sbjct: 25088491 catctgacttgttagttgatggtaaaagaaggg 25088523
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 228 bits (115), Expect = 2e-56 Identities = 187/211 (88%) Strand = Plus / Plus Query: 264 gggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacagac 323 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 36019 gggagatagacaaagaagagttcaagaaagtaatggcactgatgcgatcctataacagac 36078 Query: 324 aaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaaa 383 ||||||| ||| || |||||||||||||| ||| | |||||||| ||| ||||||||| Sbjct: 36079 aaggagccaaccatagagatggcttacgtactggactaaaagttggtcagcctgtggaaa 36138 Query: 384 atggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgata 443 ||||||| || ||||| || |||||||||| ||||||||| ||||||||||||| ||| | Sbjct: 36139 atggtggagtggttgaatacttctttggtaatgatgggaacgaacctctacactatgaca 36198 Query: 444 agttcacaagttttttgaaggaattgcatga 474 |||| |||| ||||||||| | ||||||||| Sbjct: 36199 agtttacaaattttttgaaaggattgcatga 36229 Score = 145 bits (73), Expect = 2e-31 Identities = 127/145 (87%) Strand = Plus / Plus Query: 477 agattattcgtctggaattcagtcattatgatgtcaattcgacaaacactatcccagcaa 536 |||| |||||||||||||||||||| ||||| ||||| || | || ||||||||||||| Sbjct: 36677 agatcattcgtctggaattcagtcactatgacgtcaagtcatctaatactatcccagcaa 36736 Query: 537 aggattttgcactgtccatggtggcttctgctgacatgaatcacattagcaagctacttg 596 ||||||| ||| | |||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct: 36737 aggatttcgcattatccatggttgcttctgctgacatgaatcacatcaacaagctacttg 36796 Query: 597 atagagctgatacattgggcaatga 621 |||||| ||||| || |||||||| Sbjct: 36797 atagagttgataatttaggcaatga 36821 Score = 113 bits (57), Expect = 7e-22 Identities = 72/77 (93%) Strand = Plus / Plus Query: 94 gtacatcttttttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaa 153 ||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct: 35356 gtacatcttttttgtgacattgctcagcatccctgagtcaagtttcagtgcggccttcaa 35415 Query: 154 aatgtttgacgtcgacc 170 |||||||||||| |||| Sbjct: 35416 aatgtttgacgttgacc 35432 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 19 agagttgcattgtgctccatccaaattcttcgtcctgtttgacacaaacaccgatggtct 78 ||||||||| ||||||||||| | |||||| | ||||||||||||||| ||| | || Sbjct: 35034 agagttgcactgtgctccatcggagttcttcatgctgtttgacacaaacggtgataggct 35093 Query: 79 catctcgtttgccgagta 96 |||||| ||||||||||| Sbjct: 35094 catctcctttgccgagta 35111 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 233 catctggcttgttagttgatggtaaaagaaggg 265 |||||| |||||||||||||||||||||||||| Sbjct: 35918 catctgacttgttagttgatggtaaaagaaggg 35950
>ref|XM_466698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1711 Score = 208 bits (105), Expect = 2e-50 Identities = 285/345 (82%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacaga 322 ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| | || Sbjct: 730 ggggaaatagacaaagaagagtttaagaaagtaatggcactgatgcggtcctatcatagg 789 Query: 323 caaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaa 382 |||||||||||||| |||||||| |||||| || |||| ||||| ||||| |||||| Sbjct: 790 caaggagctgcccatagggatggtttacgttttggtcttaaggttggtcagtcagtggaa 849 Query: 383 aatggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgat 442 |||||||| | |||||||| ||||| || | ||||| ||||||| ||| || |||| Sbjct: 850 aatggtggactggttgagtacttcttcggcaaggatggcaatgaacagttacgctatgat 909 Query: 443 aagttcacaagttttttgaaggaattgcatgaagagattattcgtctggaattcagtcat 502 |||||| | | |||||||||| |||||||||| |||||| |||| ||||||||||||| Sbjct: 910 aagttctccaattttttgaagcaattgcatgatgagattgttcgcttggaattcagtcac 969 Query: 503 tatgatgtcaattcgacaaacactatcccagcaaaggattttgcactgtccatggtggct 562 ||||||||||| || | || || || | | ||||| |||||| | |||||||| ||| Sbjct: 970 tatgatgtcaaatcatccaagacaatatctgtgaaggactttgcattatccatggttgct 1029 Query: 563 tctgctgacatgaatcacattagcaagctacttgatagagctgat 607 ||||| || ||||||||||| | |||||||||||| |||| |||| Sbjct: 1030 tctgcagatatgaatcacataaacaagctacttgacagagttgat 1074 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 53 ctgtttgacacaaacaccgatggtctcatctcgtttgccgagtacatcttttttgttaca 112 ||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 607 ctgtttgacacgaacggagatgggctcatctcctttgccgagtacatcttttttgtgaca 666 Query: 113 ttactcagcattcctgagtcaagcttca 140 || || ||||||||||| ||||| |||| Sbjct: 667 ttgcttagcattcctgaatcaagtttca 694
>dbj|AK066756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075K23, full insert sequence Length = 1710 Score = 208 bits (105), Expect = 2e-50 Identities = 285/345 (82%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacaga 322 ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| | || Sbjct: 729 ggggaaatagacaaagaagagtttaagaaagtaatggcactgatgcggtcctatcatagg 788 Query: 323 caaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaa 382 |||||||||||||| |||||||| |||||| || |||| ||||| ||||| |||||| Sbjct: 789 caaggagctgcccatagggatggtttacgttttggtcttaaggttggtcagtcagtggaa 848 Query: 383 aatggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgat 442 |||||||| | |||||||| ||||| || | ||||| ||||||| ||| || |||| Sbjct: 849 aatggtggactggttgagtacttcttcggcaaggatggcaatgaacagttacgctatgat 908 Query: 443 aagttcacaagttttttgaaggaattgcatgaagagattattcgtctggaattcagtcat 502 |||||| | | |||||||||| |||||||||| |||||| |||| ||||||||||||| Sbjct: 909 aagttctccaattttttgaagcaattgcatgatgagattgttcgcttggaattcagtcac 968 Query: 503 tatgatgtcaattcgacaaacactatcccagcaaaggattttgcactgtccatggtggct 562 ||||||||||| || | || || || | | ||||| |||||| | |||||||| ||| Sbjct: 969 tatgatgtcaaatcatccaagacaatatctgtgaaggactttgcattatccatggttgct 1028 Query: 563 tctgctgacatgaatcacattagcaagctacttgatagagctgat 607 ||||| || ||||||||||| | |||||||||||| |||| |||| Sbjct: 1029 tctgcagatatgaatcacataaacaagctacttgacagagttgat 1073 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 53 ctgtttgacacaaacaccgatggtctcatctcgtttgccgagtacatcttttttgttaca 112 ||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 606 ctgtttgacacgaacggagatgggctcatctcctttgccgagtacatcttttttgtgaca 665 Query: 113 ttactcagcattcctgagtcaagcttca 140 || || ||||||||||| ||||| |||| Sbjct: 666 ttgcttagcattcctgaatcaagtttca 693
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 149 bits (75), Expect = 1e-32 Identities = 177/211 (83%) Strand = Plus / Plus Query: 264 gggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacagac 323 |||| ||||||||||||||||| ||||||||||||||| |||||||||||||| | || | Sbjct: 24180182 gggaaatagacaaagaagagtttaagaaagtaatggcactgatgcggtcctatcataggc 24180241 Query: 324 aaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaaa 383 ||||||||||||| |||||||| |||||| || |||| ||||| ||||| ||||||| Sbjct: 24180242 aaggagctgcccatagggatggtttacgttttggtcttaaggttggtcagtcagtggaaa 24180301 Query: 384 atggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgata 443 ||||||| | |||||||| ||||| || | ||||| ||||||| ||| || ||||| Sbjct: 24180302 atggtggactggttgagtacttcttcggcaaggatggcaatgaacagttacgctatgata 24180361 Query: 444 agttcacaagttttttgaaggaattgcatga 474 ||||| | | |||||||||| |||||||||| Sbjct: 24180362 agttctccaattttttgaagcaattgcatga 24180392 Score = 73.8 bits (37), Expect = 6e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 206 gacctgctctttatgagcatgttcaatcatctggcttgttagttgatggtaaa 258 |||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 24180058 gacctgct-tttatgagcatgttcaatcatctcacttgttagttgatggtaaa 24180109 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 536 aaggattttgcactgtccatggtggcttctgctgacatgaatcacattagcaagctactt 595 ||||| |||||| | |||||||| |||||||| || ||||||||||| | |||||||||| Sbjct: 24181299 aaggactttgcattatccatggttgcttctgcagatatgaatcacataaacaagctactt 24181358 Query: 596 gatagagctgat 607 || |||| |||| Sbjct: 24181359 gacagagttgat 24181370 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 94 gtacatcttttttgttacattactcagcattcctgagtcaagcttca 140 ||||||||||||||| ||||| || ||||||||||| ||||| |||| Sbjct: 24179221 gtacatcttttttgtgacattgcttagcattcctgaatcaagtttca 24179267 Score = 40.1 bits (20), Expect = 8.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 53 ctgtttgacacaaacaccgatggtctcatctcgtttgccgagta 96 ||||||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 24178800 ctgtttgacacgaacggagatgggctcatctcctttgccgagta 24178843
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 149 bits (75), Expect = 1e-32 Identities = 177/211 (83%) Strand = Plus / Plus Query: 264 gggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacagac 323 |||| ||||||||||||||||| ||||||||||||||| |||||||||||||| | || | Sbjct: 138923 gggaaatagacaaagaagagtttaagaaagtaatggcactgatgcggtcctatcataggc 138982 Query: 324 aaggagctgcccacagggatggcttacgtacaggatttaaagttggccagtctgtggaaa 383 ||||||||||||| |||||||| |||||| || |||| ||||| ||||| ||||||| Sbjct: 138983 aaggagctgcccatagggatggtttacgttttggtcttaaggttggtcagtcagtggaaa 139042 Query: 384 atggtggggtcgttgagtatttctttggtagtgatgggaatgaacctctacactttgata 443 ||||||| | |||||||| ||||| || | ||||| ||||||| ||| || ||||| Sbjct: 139043 atggtggactggttgagtacttcttcggcaaggatggcaatgaacagttacgctatgata 139102 Query: 444 agttcacaagttttttgaaggaattgcatga 474 ||||| | | |||||||||| |||||||||| Sbjct: 139103 agttctccaattttttgaagcaattgcatga 139133 Score = 73.8 bits (37), Expect = 6e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 206 gacctgctctttatgagcatgttcaatcatctggcttgttagttgatggtaaa 258 |||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 138799 gacctgct-tttatgagcatgttcaatcatctcacttgttagttgatggtaaa 138850 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 536 aaggattttgcactgtccatggtggcttctgctgacatgaatcacattagcaagctactt 595 ||||| |||||| | |||||||| |||||||| || ||||||||||| | |||||||||| Sbjct: 140040 aaggactttgcattatccatggttgcttctgcagatatgaatcacataaacaagctactt 140099 Query: 596 gatagagctgat 607 || |||| |||| Sbjct: 140100 gacagagttgat 140111 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 94 gtacatcttttttgttacattactcagcattcctgagtcaagcttca 140 ||||||||||||||| ||||| || ||||||||||| ||||| |||| Sbjct: 137962 gtacatcttttttgtgacattgcttagcattcctgaatcaagtttca 138008 Score = 40.1 bits (20), Expect = 8.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 53 ctgtttgacacaaacaccgatggtctcatctcgtttgccgagta 96 ||||||||||| ||| ||||| |||||||| ||||||||||| Sbjct: 137541 ctgtttgacacgaacggagatgggctcatctcctttgccgagta 137584
>gb|AY103950.1| Zea mays PCO137410 mRNA sequence Length = 823 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Plus Query: 476 gagattattcgtctggaattcagtcattatgatgtcaattcgacaaacactatcccagca 535 ||||||||||| |||| || ||||||||||||||||| ||| | || ||||| |||||| Sbjct: 13 gagattattcgattggagtttagtcattatgatgtcaagtcgtctaaaactataccagca 72 Query: 536 aaggattttgcactgtccatggtggcttctgctgacatgaatcacattagcaagctactt 595 |||||||||||| |||||||||| ||||||||||||||||| || || | |||||| ||| Sbjct: 73 aaggattttgcattgtccatggttgcttctgctgacatgaaccatatcaacaagctgctt 132 Query: 596 gatagagctgat 607 |||||||||||| Sbjct: 133 gatagagctgat 144
>emb|BX827714.1|CNS0A307 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH13ZB10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1676 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 104 tttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaaaatgtttga 162 |||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||| Sbjct: 753 tttgttacattactcagcattcctgaatcaagcttcgcagtggctttcaaaatgtttga 811
>gb|AC144477.16| Medicago truncatula clone mth2-6k4, complete sequence Length = 112241 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 264 gggagatagacaaagaagagttcaagaaagtaatggcattgatgcggtcctataacagac 323 |||| |||||||| ||||| ||||||||||| ||| |||||||||| || | ||||||| Sbjct: 25535 gggaaatagacaaggaagaattcaagaaagtgatgtcattgatgcgatctcaaaacagac 25594 Query: 324 aaggagctgcccacagggatgg 345 |||||||| |||||| ||||| Sbjct: 25595 aaggagctaaccacagagatgg 25616 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 536 aaggattttgcactgtccatggtggcttctgctgacatgaatcacat 582 |||||||||||||| ||| |||| || ||||| ||||| |||||||| Sbjct: 26024 aaggattttgcactatccttggttgcatctgcagacattaatcacat 26070
>ref|NM_119358.3| Arabidopsis thaliana calcium ion binding AT4G32060 mRNA, complete cds Length = 1825 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 104 tttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaaaatgtttga 162 ||||| |||||||||||||||||||| ||||||||| | ||| |||||||||||||| Sbjct: 765 tttgtgacattactcagcattcctgaatcaagcttcgcagtggctttcaaaatgtttga 823 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaaga 290 |||||||| |||||||||||||| |||| Sbjct: 837 ggggagattgacaaagaagagtttaaga 864
>gb|AY122982.1| Arabidopsis thaliana unknown protein (At4g32060) mRNA, complete cds Length = 1528 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 104 tttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaaaatgtttga 162 ||||| |||||||||||||||||||| ||||||||| | ||| |||||||||||||| Sbjct: 709 tttgtgacattactcagcattcctgaatcaagcttcgcagtggctttcaaaatgtttga 767 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaaga 290 |||||||| |||||||||||||| |||| Sbjct: 781 ggggagattgacaaagaagagtttaaga 808
>gb|AY072163.1| Arabidopsis thaliana unknown protein (At4g32060) mRNA, complete cds Length = 1772 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 104 tttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaaaatgtttga 162 ||||| |||||||||||||||||||| ||||||||| | ||| |||||||||||||| Sbjct: 765 tttgtgacattactcagcattcctgaatcaagcttcgcagtggctttcaaaatgtttga 823 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 ggggagatagacaaagaagagttcaaga 290 |||||||| |||||||||||||| |||| Sbjct: 837 ggggagattgacaaagaagagtttaaga 864
>emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome 4, BAC clone F10N7 (ESSA project) Length = 96585 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 104 tttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaaaatgtttga 162 ||||| |||||||||||||||||||| ||||||||| | ||| |||||||||||||| Sbjct: 37021 tttgtgacattactcagcattcctgaatcaagcttcgcagtggctttcaaaatgtttga 36963
>emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76 Length = 165698 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 104 tttgttacattactcagcattcctgagtcaagcttcagtgcggccttcaaaatgtttga 162 ||||| |||||||||||||||||||| ||||||||| | ||| |||||||||||||| Sbjct: 76932 tttgtgacattactcagcattcctgaatcaagcttcgcagtggctttcaaaatgtttga 76990
>gb|BC110926.1| Xenopus laevis cDNA clone MGC:132050 IMAGE:6946400, complete cds Length = 2461 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 ttttttgttacattactcagca 122 |||||||||||||||||||||| Sbjct: 1051 ttttttgttacattactcagca 1030
>gb|BC088808.1| Xenopus laevis hypothetical LOC496299, mRNA (cDNA clone MGC:98310 IMAGE:7007713), complete cds Length = 2144 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 ttttttgttacattactcagca 122 |||||||||||||||||||||| Sbjct: 1053 ttttttgttacattactcagca 1032
>gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, complete sequence Length = 201126 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 ggtaaaagaaggggagatagacaaa 277 ||||||||||||||||||| ||||| Sbjct: 165906 ggtaaaagaaggggagatatacaaa 165930
>gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosome 3, complete sequence Length = 180525 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 ggtaaaagaaggggagatagacaaa 277 ||||||||||||||||||| ||||| Sbjct: 39126 ggtaaaagaaggggagatatacaaa 39150
>gb|AC123836.4| Mus musculus BAC clone RP23-367G3 from chromosome 15, complete sequence Length = 179575 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 441 ataagttcacaagttttttga 461 ||||||||||||||||||||| Sbjct: 143691 ataagttcacaagttttttga 143711
>emb|AL136145.23| Human DNA sequence from clone RP11-37K18 on chromosome 13 Contains a tripartite motif-containing 39 (TRIM39, TFP) pseudogene, complete sequence Length = 83809 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 ttaaagttggccagtctgtgg 380 ||||||||||||||||||||| Sbjct: 19188 ttaaagttggccagtctgtgg 19208
>gb|AE010258.1| Pyrococcus furiosus DSM 3638, section 133 of 173 of the complete genome Length = 10401 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 atagacaaagaagagttcaagaaag 293 ||||||||||||||| ||||||||| Sbjct: 2299 atagacaaagaagagatcaagaaag 2323
>gb|AC151842.5| Mus musculus BAC clone RP23-134O8 from chromosome 15, complete sequence Length = 170493 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 ataagttcacaagttttttga 461 ||||||||||||||||||||| Sbjct: 157085 ataagttcacaagttttttga 157065
>ref|XM_640072.1| Dictyostelium discoideum hypothetical protein (DDB0216972), partial mRNA Length = 3438 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ttttgaaggaattgcatgaa 475 |||||||||||||||||||| Sbjct: 2508 ttttgaaggaattgcatgaa 2489
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tatttctttggtagtgatgg 420 |||||||||||||||||||| Sbjct: 835098 tatttctttggtagtgatgg 835079
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gggtcgttgagtatttcttt 409 |||||||||||||||||||| Sbjct: 1279847 gggtcgttgagtatttcttt 1279828
>gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete sequence Length = 129742 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ttgcattgtgctccatccaa 42 |||||||||||||||||||| Sbjct: 126871 ttgcattgtgctccatccaa 126890
>gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete sequence Length = 131790 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttgcattgtgctccatccaa 42 |||||||||||||||||||| Sbjct: 97613 ttgcattgtgctccatccaa 97594
>emb|BX511006.10| Zebrafish DNA sequence from clone DKEY-106F13 in linkage group 7, complete sequence Length = 220514 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 agatagacaaagaagagttc 286 |||||||||||||||||||| Sbjct: 69305 agatagacaaagaagagttc 69324
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence Length = 109793 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 424 tgaacctctacactttgataagtt 447 ||||| |||||||||||||||||| Sbjct: 79002 tgaacatctacactttgataagtt 78979
>emb|Z38125.1|SC9150 S.cerevisiae chromosome IX cosmid 9150 Length = 43504 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tgaaggaattgcatgaagag 478 |||||||||||||||||||| Sbjct: 9607 tgaaggaattgcatgaagag 9588
>emb|AJ387911.1|EDU387911 Enterococcus durans partial sodA gene for superoxide dismutase, strain CIP 55.125 T (ATCC 19432) Length = 438 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 caaagaagagttcaagaaag 293 |||||||||||||||||||| Sbjct: 294 caaagaagagttcaagaaag 313
>gb|AC084209.6| Homo sapiens BAC clone RP11-462C24 from 4, complete sequence Length = 151980 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tgtgctccatccaaattctt 48 |||||||||||||||||||| Sbjct: 69770 tgtgctccatccaaattctt 69751
>ref|XM_571994.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 1080 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tatttctttggtagtgatgg 420 |||||||||||||||||||| Sbjct: 610 tatttctttggtagtgatgg 629
>gb|AC114265.2| Dictyostelium discoideum chromosome 2 map 4520461-4544940 strain AX4, complete sequence Length = 24479 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 ttttgaaggaattgcatgaa 475 |||||||||||||||||||| Sbjct: 19046 ttttgaaggaattgcatgaa 19027
>gb|AC117373.10| Homo sapiens 12 BAC RP11-174M13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175768 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ataagttcacaagttttttg 460 |||||||||||||||||||| Sbjct: 38225 ataagttcacaagttttttg 38244
>gb|AC156934.1| Mus musculus BAC clone RP24-425B15 from 7, complete sequence Length = 123176 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 aattcagtcattatgatgtc 511 |||||||||||||||||||| Sbjct: 54922 aattcagtcattatgatgtc 54941
>dbj|D26114.1|HAMCCG1 Mesocricetus auratus mRNA for CCG1, complete cds Length = 5660 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 aagaaagtaatggcattgat 306 |||||||||||||||||||| Sbjct: 1175 aagaaagtaatggcattgat 1194
>gb|DQ139769.1| Oryzomys palustris endogenous virus mysTR Opalc96, complete sequence Length = 7770 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 gataagttcacaagtttttt 459 |||||||||||||||||||| Sbjct: 3824 gataagttcacaagtttttt 3805 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,882,842 Number of Sequences: 3902068 Number of extensions: 5882842 Number of successful extensions: 118477 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118271 Number of HSP's gapped (non-prelim): 202 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
