ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123933.4| Mus musculus BAC clone RP23-339F7 from chromosome... 48 0.029
2emb|AL583836.18| Human DNA sequence from clone RP11-466J14 on ch... 48 0.029
3emb|AL928991.9| Mouse DNA sequence from clone RP23-455F5 on chro... 48 0.029
4gb|AC153371.7| Mus musculus 6 BAC RP23-304H3 (Roswell Park Cance... 46 0.11
5gb|AC153991.3| Mus musculus 6 BAC RP24-541D10 (Roswell Park Canc... 46 0.11
6gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 44 0.45
7gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 44 0.45
8gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 44 0.45
9gb|AC121931.2| Mus musculus BAC clone RP24-205H14 from 2, comple... 44 0.45
10gb|CP000001.1| Bacillus cereus E33L, complete genome 44 0.45
11gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 44 0.45
12gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 44 0.45
13emb|AL928699.9| Mouse DNA sequence from clone RP23-386I18 on chr... 44 0.45
14gb|AC136730.9| Mus musculus chromosome 19, clone RP23-76E22, com... 42 1.8
15gb|AC119905.11| Mus musculus chromosome 17, clone RP24-238N14, c... 42 1.8
16gb|AC165233.6| Mus musculus chromosome 8, clone RP23-307O2, comp... 42 1.8
17gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. ... 42 1.8
18gb|AC163221.4| Mus musculus chromosome 19, clone RP23-376A6, com... 42 1.8
19emb|AL354871.12| Human DNA sequence from clone RP11-66G15 on chr... 42 1.8
20emb|AL138882.8| Human DNA sequence from clone RP1-195K21 on chro... 42 1.8
21emb|AL133262.8| Human DNA sequence from clone RP1-319D22 on chro... 42 1.8
22emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 ... 42 1.8
23gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, comple... 42 1.8
24gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Can... 42 1.8
25ref|XM_688948.1| PREDICTED: Danio rerio collagen, type IV, alpha... 42 1.8
26ref|XM_626936.1| Cryptosporidium parvum Iowa II hypothetical pro... 42 1.8
27gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.8
28dbj|AB028622.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.8
29ref|NM_210786.1| Eremothecium gossypii AFL118Wp (AFL118W), mRNA 42 1.8
30gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete... 42 1.8
31ref|XM_639864.1| Dictyostelium discoideum hypothetical protein (... 40 7.0
32gb|AC151731.4| Mus musculus BAC clone RP23-401H13 from chromosom... 40 7.0
33ref|NM_001002979.1| Canis familiaris collagen, type IV, alpha 5 ... 40 7.0
34gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 7.0
35gb|AF074021.1| Arabidopsis thaliana BAC F4H6, chromosome IV, com... 40 7.0
36ref|XM_610590.2| PREDICTED: Bos taurus similar to Exosome comple... 40 7.0
37gb|AF470624.2| Canis familiaris type IV collagen alpha 5 (COL4A5... 40 7.0
38gb|AC110038.25| Mus musculus chromosome 1, clone RP23-258M15, co... 40 7.0
39gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, comp... 40 7.0
40gb|AC099735.47| Mus musculus chromosome 1, clone RP23-218I9, com... 40 7.0
41gb|AC140373.2| Mus musculus BAC clone RP23-197O10 from chromosom... 40 7.0
42gb|AY208849.1| Dictyostelium discoideum putative FHA-HIT mRNA, c... 40 7.0
43gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete s... 40 7.0
44emb|AL592428.6| Human DNA sequence from clone RP11-116P2 on chro... 40 7.0
45emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chr... 40 7.0
46emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on ch... 40 7.0
47emb|AL353756.5| Human DNA sequence from clone RP11-415D9 on chro... 40 7.0
48emb|AL138706.9| Human DNA sequence from clone RP11-421P11 on chr... 40 7.0
49gb|AC158972.4| Mus musculus chromosome 15, clone RP24-225M16, co... 40 7.0
50emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, ... 40 7.0
51gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, com... 40 7.0
52gb|AC105917.5| Homo sapiens BAC clone RP11-395C17 from 4, comple... 40 7.0
53gb|AC157661.2| Mus musculus BAC clone RP23-233F23 from chromosom... 40 7.0
54ref|XM_624733.1| PREDICTED: Apis mellifera similar to ENSANGP000... 40 7.0
55gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G... 40 7.0
56gb|AC154545.2| Mus musculus BAC clone RP23-431G16 from chromosom... 40 7.0
57gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047... 40 7.0
58gb|AY078501.1| Canis familiaris type IV collagen alpha 5 chain (... 40 7.0
59gb|AC079437.2| Rattus norvegicus strain Brown Norway chromosome ... 40 7.0
60ref|XM_222675.3| PREDICTED: Rattus norvegicus crumbs homolog 1 (... 40 7.0
61gb|AC083811.22| Homo sapiens 12 BAC RP11-810G6 (Roswell Park Can... 40 7.0
62gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p... 40 7.0
63gb|AC136365.5| Homo sapiens chromosome 8, clone RP11-97P4, compl... 40 7.0
64gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana... 40 7.0
65gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 7.0
66gb|AC110174.10| Mus musculus chromosome 3, clone RP23-293K21, co... 40 7.0
67dbj|AP001034.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.0
68emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 ... 40 7.0
69dbj|AB010875.1| Arabidopsis thaliana gene for PHR1, complete cds 40 7.0
70gb|U07888.1|CFU07888 Canis familiaris Samoyed collagen type IV A... 40 7.0
71gb|AC102591.14| Mus musculus chromosome 3, clone RP23-336B10, co... 40 7.0
72dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 7.0 
>gb|AC123933.4| Mus musculus BAC clone RP23-339F7 from chromosome 2, complete sequence
          Length = 201267

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 106   ctggattttgttgattttgatgtt 129
             ||||||||||||||||||||||||
Sbjct: 27551 ctggattttgttgattttgatgtt 27574
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>emb|AL583836.18| Human DNA sequence from clone RP11-466J14 on chromosome 10 Contains the
             CYP2C18 gene for  cytochrome P450 family 2 subfamily C
             polypeptide 18, a pseudogene similar to part of NADH
             dehydrogenase 4 (MTND4) and the 5' end of the CYP2C19 gene
             for cytochrome P450 family 2 subfamily C polypeptide 19,
             complete sequence
          Length = 115177

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 110   attttgttgattttgatgttattg 133
             ||||||||||||||||||||||||
Sbjct: 25137 attttgttgattttgatgttattg 25160
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>emb|AL928991.9| Mouse DNA sequence from clone RP23-455F5 on chromosome 2, complete
              sequence
          Length = 149871

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 106    ctggattttgttgattttgatgtt 129
              ||||||||||||||||||||||||
Sbjct: 143788 ctggattttgttgattttgatgtt 143765
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>gb|AC153371.7| Mus musculus 6 BAC RP23-304H3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206412

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 439   aattctgcttacaagacaccaat 461
             |||||||||||||||||||||||
Sbjct: 62202 aattctgcttacaagacaccaat 62224
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>gb|AC153991.3| Mus musculus 6 BAC RP24-541D10 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202289

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 439    aattctgcttacaagacaccaat 461
              |||||||||||||||||||||||
Sbjct: 161954 aattctgcttacaagacaccaat 161976
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    gaaccaaaagttgaaaacattg 412
              ||||||||||||||||||||||
Sbjct: 725871 gaaccaaaagttgaaaacattg 725892
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    gaaccaaaagttgaaaacattg 412
              ||||||||||||||||||||||
Sbjct: 734981 gaaccaaaagttgaaaacattg 735002
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    gaaccaaaagttgaaaacattg 412
              ||||||||||||||||||||||
Sbjct: 734876 gaaccaaaagttgaaaacattg 734897
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>gb|AC121931.2| Mus musculus BAC clone RP24-205H14 from 2, complete sequence
          Length = 188664

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 491    tatattctcttgatgcatgattcagg 516
              ||||||||||||||||||||| ||||
Sbjct: 115467 tatattctcttgatgcatgatgcagg 115442
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    gaaccaaaagttgaaaacattg 412
              ||||||||||||||||||||||
Sbjct: 724885 gaaccaaaagttgaaaacattg 724906
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    gaaccaaaagttgaaaacattg 412
              ||||||||||||||||||||||
Sbjct: 734980 gaaccaaaagttgaaaacattg 735001
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    gaaccaaaagttgaaaacattg 412
              ||||||||||||||||||||||
Sbjct: 811576 gaaccaaaagttgaaaacattg 811597
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>emb|AL928699.9| Mouse DNA sequence from clone RP23-386I18 on chromosome 2, complete
              sequence
          Length = 183473

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 491    tatattctcttgatgcatgattcagg 516
              ||||||||||||||||||||| ||||
Sbjct: 124648 tatattctcttgatgcatgatgcagg 124623
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>gb|AC136730.9| Mus musculus chromosome 19, clone RP23-76E22, complete sequence
          Length = 146616

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 110   attttgttgattttgatgttattga 134
             ||||||||| |||||||||||||||
Sbjct: 78701 attttgttgtttttgatgttattga 78677
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>gb|AC119905.11| Mus musculus chromosome 17, clone RP24-238N14, complete sequence
          Length = 179042

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 404   aaaacattgttgatgttaagaacaa 428
             |||||||||||||| ||||||||||
Sbjct: 98449 aaaacattgttgatattaagaacaa 98473
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>gb|AC165233.6| Mus musculus chromosome 8, clone RP23-307O2, complete sequence
          Length = 158925

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 117   tgattttgatgttattgagaa 137
             |||||||||||||||||||||
Sbjct: 70482 tgattttgatgttattgagaa 70502
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>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene,
             complete cds
          Length = 63393

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 96    aatcatttatctggattttgttgattttgatgt 128
             |||||||| ||| |||||||| |||||||||||
Sbjct: 42709 aatcatttctcttgattttgtagattttgatgt 42741
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>gb|AC163221.4| Mus musculus chromosome 19, clone RP23-376A6, complete sequence
          Length = 188740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 110    attttgttgattttgatgttattga 134
              ||||||||| |||||||||||||||
Sbjct: 143197 attttgttgtttttgatgttattga 143173
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>emb|AL354871.12| Human DNA sequence from clone RP11-66G15 on chromosome 13, complete
             sequence
          Length = 96159

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   ttttgatgttattgagaatca 140
             |||||||||||||||||||||
Sbjct: 25206 ttttgatgttattgagaatca 25186
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>emb|AL138882.8| Human DNA sequence from clone RP1-195K21 on chromosome 6 Contains part
             of the KHDRBS2 gene for KH domain containing RNA binding
             signal transduction associated protein 2, complete
             sequence
          Length = 75512

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 228   tgagtctaagaaagcatttggaatt 252
             ||||||||||| |||||||||||||
Sbjct: 67018 tgagtctaagacagcatttggaatt 66994
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>emb|AL133262.8| Human DNA sequence from clone RP1-319D22 on chromosome 6 Contains the
            3' end of a novel gene (possible ortholog of rodent
            CDC5-like protein), complete sequence
          Length = 86372

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 96   aatcatttatctggattttgttgattttgatgt 128
            |||||||| ||| |||||||| |||||||||||
Sbjct: 5837 aatcatttctcttgattttgtagattttgatgt 5869
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>emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 on chromosome 6p24.1-25.3
             Contains a novel gene, complete sequence
          Length = 131819

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 485   tgaacatatattctcttgatgcatgattc 513
             ||||||| | |||||||||||||||||||
Sbjct: 18367 tgaacattttttctcttgatgcatgattc 18339
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>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence
          Length = 214250

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    gaggttcgtgtggaagaaact 372
              |||||||||||||||||||||
Sbjct: 168787 gaggttcgtgtggaagaaact 168807
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>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155413

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 228    tgagtctaagaaagcatttggaatt 252
              ||||||||||| |||||||||||||
Sbjct: 112276 tgagtctaagacagcatttggaatt 112252
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>ref|XM_688948.1| PREDICTED: Danio rerio collagen, type IV, alpha 5 (col4a5), mRNA
          Length = 4876

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 397  aaagttgaaaacattgttgatgtta 421
            ||||||| |||||||||||||||||
Sbjct: 3648 aaagttgcaaacattgttgatgtta 3624
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>ref|XM_626936.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_3900),
           partial mRNA
          Length = 3024

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 130 attgagaatcatcaatcaatt 150
           |||||||||||||||||||||
Sbjct: 727 attgagaatcatcaatcaatt 747
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 244    tttggaattctaacacttcga 264
              |||||||||||||||||||||
Sbjct: 218229 tttggaattctaacacttcga 218209
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>dbj|AB028622.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24
          Length = 82348

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 394   ccaaaagttgaaaacattgtt 414
             |||||||||||||||||||||
Sbjct: 38044 ccaaaagttgaaaacattgtt 38024
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>ref|NM_210786.1| Eremothecium gossypii AFL118Wp (AFL118W), mRNA
          Length = 2499

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  tttggaattctaacacttcga 264
            |||||||||||||||||||||
Sbjct: 1825 tttggaattctaacacttcga 1805
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>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence
          Length = 177471

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 228   tgagtctaagaaagcatttggaatt 252
             ||||||||||| |||||||||||||
Sbjct: 32957 tgagtctaagacagcatttggaatt 32981
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>ref|XM_639864.1| Dictyostelium discoideum hypothetical protein (DDB0201560), partial
           mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tgttgattttgatgttattg 133
           ||||||||||||||||||||
Sbjct: 597 tgttgattttgatgttattg 578
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>gb|AC151731.4| Mus musculus BAC clone RP23-401H13 from chromosome 9, complete sequence
          Length = 193536

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 398    aagttgaaaacattgttgatgtta 421
              ||||||||||||||||| ||||||
Sbjct: 167825 aagttgaaaacattgtttatgtta 167802
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>ref|NM_001002979.1| Canis familiaris collagen, type IV, alpha 5 (Alport syndrome)
            (COL4A5), mRNA
          Length = 5681

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  aaagttgaaaacattgttgatgtt 420
            ||||||| ||||||||||||||||
Sbjct: 4781 aaagttgcaaacattgttgatgtt 4758
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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 114     tgttgattttgatgttattgagaa 137
               |||||||||||||| |||||||||
Sbjct: 2355748 tgttgattttgatgctattgagaa 2355725
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>gb|AF074021.1| Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence
          Length = 103632

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    attttgttgattttgatgtt 129
              ||||||||||||||||||||
Sbjct: 101759 attttgttgattttgatgtt 101740
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>ref|XM_610590.2| PREDICTED: Bos taurus similar to Exosome complex exonuclease RRP43
           (Ribosomal RNA processing protein 43) (Exosome component
           8) (p9) (Opa-interacting protein 2) (LOC532080), partial
           mRNA
          Length = 629

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 330 gtttctttcagttccttatgtgga 353
           |||||||||||||||| |||||||
Sbjct: 128 gtttctttcagttcctaatgtgga 151
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>gb|AF470624.2| Canis familiaris type IV collagen alpha 5 (COL4A5) mRNA, complete cds
          Length = 5681

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  aaagttgaaaacattgttgatgtt 420
            ||||||| ||||||||||||||||
Sbjct: 4781 aaagttgcaaacattgttgatgtt 4758
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>gb|AC110038.25| Mus musculus chromosome 1, clone RP23-258M15, complete sequence
          Length = 232830

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    tccttcagttttgaacatat 493
              ||||||||||||||||||||
Sbjct: 142319 tccttcagttttgaacatat 142338
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>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence
          Length = 241184

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   tctggattttgttgattttg 124
             ||||||||||||||||||||
Sbjct: 31550 tctggattttgttgattttg 31569
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>gb|AC099735.47| Mus musculus chromosome 1, clone RP23-218I9, complete sequence
          Length = 207768

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   tccttcagttttgaacatat 493
             ||||||||||||||||||||
Sbjct: 11974 tccttcagttttgaacatat 11993
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>gb|AC140373.2| Mus musculus BAC clone RP23-197O10 from chromosome 15, complete
             sequence
          Length = 215314

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   ttttgttgattttgatgttattga 134
             |||||||||||||| |||||||||
Sbjct: 89301 ttttgttgattttgttgttattga 89278
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>gb|AY208849.1| Dictyostelium discoideum putative FHA-HIT mRNA, complete cds
          Length = 1318

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tgttgattttgatgttattg 133
           ||||||||||||||||||||
Sbjct: 642 tgttgattttgatgttattg 623
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>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence
          Length = 113210

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tggattttgttgattttgat 126
             ||||||||||||||||||||
Sbjct: 54416 tggattttgttgattttgat 54435
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>emb|AL592428.6| Human DNA sequence from clone RP11-116P2 on chromosome 6, complete
             sequence
          Length = 86630

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    aaatgataatgaacagaccaagtg 43
             |||||||||||||||| |||||||
Sbjct: 58734 aaatgataatgaacagcccaagtg 58757
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>emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chromosome 6 Contains the 3'
              part of a novel gene, complete sequence
          Length = 157929

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 111    ttttgttgattttgatgttattga 134
              ||||||||||||||||| ||||||
Sbjct: 101626 ttttgttgattttgatgctattga 101603
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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
             sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tttgttgattttgatgttat 131
             ||||||||||||||||||||
Sbjct: 64291 tttgttgattttgatgttat 64272
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>emb|AL353756.5| Human DNA sequence from clone RP11-415D9 on chromosome 9, complete
             sequence
          Length = 146155

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   ttttgttgattttgatgttattga 134
             |||||||||| |||||||||||||
Sbjct: 80945 ttttgttgatgttgatgttattga 80968
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>emb|AL138706.9| Human DNA sequence from clone RP11-421P11 on chromosome 13 Contains the
              MADH9 gene for MAD (mothers against decapentaplegic homolog
              9 (Drosophila), the gene for dolichyl-phosphate
              beta-glucosyltransferase (ALG5), the gene for
              Opa-interacting protein 2 (OIP2), the 3' end of the gene
              for transcription factor (p38 interacting protein)
              (P38IP)part of as novel gene, a RPL29 pseudogene, a
              MAP2K1IP1 pseudogene and a CpG island, complete sequence
          Length = 195032

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 330    gtttctttcagttccttatgtgga 353
              |||||||||||||||| |||||||
Sbjct: 162953 gtttctttcagttcctaatgtgga 162976
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>gb|AC158972.4| Mus musculus chromosome 15, clone RP24-225M16, complete sequence
          Length = 163900

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 474   tccttcagttttgaacatatattctctt 501
             |||||||||||| | |||||||||||||
Sbjct: 90533 tccttcagttttaagcatatattctctt 90506
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>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13
          Length = 200001

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   attttgttgattttgatgtt 129
             ||||||||||||||||||||
Sbjct: 68430 attttgttgattttgatgtt 68411
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>gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, complete sequence
          Length = 134242

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   taactcatattaagaatgat 192
             ||||||||||||||||||||
Sbjct: 12721 taactcatattaagaatgat 12702
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>gb|AC105917.5| Homo sapiens BAC clone RP11-395C17 from 4, complete sequence
          Length = 191323

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   ttttgttgattttgatgttattga 134
             |||||||||| |||||||||||||
Sbjct: 70319 ttttgttgatgttgatgttattga 70296
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>gb|AC157661.2| Mus musculus BAC clone RP23-233F23 from chromosome 3, complete sequence
          Length = 195603

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    gattttgttgattttgatgttatt 132
              |||||||||||||| |||||||||
Sbjct: 118777 gattttgttgatttagatgttatt 118800
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>ref|XM_624733.1| PREDICTED: Apis mellifera similar to ENSANGP00000017682
           (LOC552357), mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 392 aaccaaaagttgaaaacatt 411
           ||||||||||||||||||||
Sbjct: 656 aaccaaaagttgaaaacatt 637
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>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence
          Length = 172400

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    gttcgtccttcagttttgaa 488
              ||||||||||||||||||||
Sbjct: 108751 gttcgtccttcagttttgaa 108770
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>gb|AC154545.2| Mus musculus BAC clone RP23-431G16 from chromosome 16, complete sequence
          Length = 202933

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    tctggattttgttgattttg 124
              ||||||||||||||||||||
Sbjct: 202700 tctggattttgttgattttg 202719
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>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4,
             complete sequence
          Length = 254733

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tgttgattttgatgttattg 133
             ||||||||||||||||||||
Sbjct: 65456 tgttgattttgatgttattg 65437
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>gb|AY078501.1| Canis familiaris type IV collagen alpha 5 chain (COL4A5) mRNA,
            partial cds
          Length = 5073

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  aaagttgaaaacattgttgatgtt 420
            ||||||| ||||||||||||||||
Sbjct: 4625 aaagttgcaaacattgttgatgtt 4602
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>gb|AC079437.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-275K4,
             complete sequence
          Length = 109809

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   ttgaacatatattctcttga 503
             ||||||||||||||||||||
Sbjct: 59788 ttgaacatatattctcttga 59769
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>ref|XM_222675.3| PREDICTED: Rattus norvegicus crumbs homolog 1 (Drosophila)
            (predicted) (Crb1_predicted), mRNA
          Length = 4236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  attgagaatcatcaatcaat 149
            ||||||||||||||||||||
Sbjct: 1519 attgagaatcatcaatcaat 1538
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>gb|AC083811.22| Homo sapiens 12 BAC RP11-810G6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173067

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 402    tgaaaacattgttgatgttaagaa 425
              |||||||||| |||||||||||||
Sbjct: 113983 tgaaaacatttttgatgttaagaa 113960
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>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence
          Length = 173842

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   gttcgtccttcagttttgaa 488
             ||||||||||||||||||||
Sbjct: 50232 gttcgtccttcagttttgaa 50251
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>gb|AC136365.5| Homo sapiens chromosome 8, clone RP11-97P4, complete sequence
          Length = 143756

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    taactcatattaagaatgat 192
              ||||||||||||||||||||
Sbjct: 143002 taactcatattaagaatgat 142983
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>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I,
             complete sequence
          Length = 118374

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    aatcatttatctggattttg 115
             ||||||||||||||||||||
Sbjct: 36428 aatcatttatctggattttg 36409
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      tcattttgaaatgataatga 31
               ||||||||||||||||||||
Sbjct: 1181473 tcattttgaaatgataatga 1181454
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>gb|AC110174.10| Mus musculus chromosome 3, clone RP23-293K21, complete sequence
          Length = 253469

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 474  tccttcagttttgaacatatattc 497
            ||||||||||||||||||| ||||
Sbjct: 5481 tccttcagttttgaacatacattc 5458
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>dbj|AP001034.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-729B4, complete
              sequence
          Length = 167934

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     atcatttatctggattttgt 116
              ||||||||||||||||||||
Sbjct: 115740 atcatttatctggattttgt 115721
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>emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1,
             complete sequence
          Length = 211668

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 379   gaagagccagcagaaccaaaagtt 402
             |||||||||||| |||||||||||
Sbjct: 31996 gaagagccagcacaaccaaaagtt 31973
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>dbj|AB010875.1| Arabidopsis thaliana gene for PHR1, complete cds
          Length = 3980

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   aatcatttatctggattttg 115
            ||||||||||||||||||||
Sbjct: 3101 aatcatttatctggattttg 3120
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>gb|U07888.1|CFU07888 Canis familiaris Samoyed collagen type IV A5 chain mRNA, partial cds
          Length = 2263

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  aaagttgaaaacattgttgatgtt 420
            ||||||| ||||||||||||||||
Sbjct: 1815 aaagttgcaaacattgttgatgtt 1792
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>gb|AC102591.14| Mus musculus chromosome 3, clone RP23-336B10, complete sequence
          Length = 216906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 474    tccttcagttttgaacatatattc 497
              ||||||||||||||||||| ||||
Sbjct: 163790 tccttcagttttgaacatacattc 163767
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>dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-870F11, complete
             sequences
          Length = 216975

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   gaaaacattgttgatgttaa 422
             ||||||||||||||||||||
Sbjct: 62816 gaaaacattgttgatgttaa 62835


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,735,928
Number of Sequences: 3902068
Number of extensions: 5735928
Number of successful extensions: 137341
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136867
Number of HSP's gapped (non-prelim): 474
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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