ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27m10 |
|---|---|
| Clone Library Name | barley_pub |
>BCHH_RHOS4 (Q9RFD5) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1193 Score = 194 bits (494), Expect = 1e-49 Identities = 89/187 (47%), Positives = 130/187 (69%) Frame = +1 Query: 4 VFSFPPDKGNVGTAAYLNVFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIHDKEAQFN 183 ++ FPP+ G VGTAAYL VF S+++VL +K++GY +E +PE+ + L + V+ +Q+ Sbjct: 444 LYGFPPNAGAVGTAAYLAVFESLFNVLNAMKREGYQLE-VPESVQALRDAVLGGTASQYG 502 Query: 184 SPNLNVVYRMNVREYQALTPYANMLEENWGKPPGHLNSDGENLLVYGKQYGNIFIGVQPT 363 P N+ ++ + + TP+ +E+ WG PG + SDG + + G+Q+GN+F+GVQP Sbjct: 503 QP-ANIAAHVSAEKIVSGTPWLADIEKAWGAAPGRIQSDGRGVYILGQQFGNVFVGVQPV 561 Query: 364 FGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDA 543 FGYEGDPMRLLF K +P H F+ +Y ++ + F AD +LHFG HG+LEFMPGKQ GMS A Sbjct: 562 FGYEGDPMRLLFEKGFAPTHAFSVFYRWLREDFGADVLLHFGMHGALEFMPGKQAGMSGA 621 Query: 544 CFPDSLI 564 C+PD LI Sbjct: 622 CWPDRLI 628
>BCHH_RHOCA (P26162) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1194 Score = 190 bits (483), Expect = 2e-48 Identities = 87/187 (46%), Positives = 124/187 (66%) Frame = +1 Query: 4 VFSFPPDKGNVGTAAYLNVFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIHDKEAQFN 183 ++ FPP+ G GTAAYL+VF S+++V+ +K GY + LPE+ +EL + V+ Sbjct: 445 LYGFPPNAGAAGTAAYLSVFESLFNVMHAMKASGYQMGELPESVQELRDAVLCGPNTTHG 504 Query: 184 SPNLNVVYRMNVREYQALTPYANMLEENWGKPPGHLNSDGENLLVYGKQYGNIFIGVQPT 363 P + R+ E+ A T + +E WG PG +DG ++ V G+Q+GN+F+G+QP Sbjct: 505 QP-AQIAARIPAAEFVARTKWLKDIEAAWGSTPGKHQTDGRDVFVLGRQFGNVFVGLQPV 563 Query: 364 FGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDA 543 FGYEGDPMRLLF K +P H FAA+Y ++ + F AD +LHFG HG+LEFMPGKQ GM ++ Sbjct: 564 FGYEGDPMRLLFEKGFAPTHAFAAFYRWLREDFAADTLLHFGMHGALEFMPGKQAGMCES 623 Query: 544 CFPDSLI 564 C+PD LI Sbjct: 624 CWPDRLI 630
>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1279 Score = 148 bits (373), Expect = 1e-35 Identities = 78/192 (40%), Positives = 116/192 (60%), Gaps = 5/192 (2%) Frame = +1 Query: 4 VFSFPPDKGNVGTAAYLNVFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIHDKEAQF- 180 V+ +PP G TAA L+V +++ +L LKK+GYNV LPE+P +L E + + Q Sbjct: 419 VYDYPPGLGKKATAALLDVPTTLLRILERLKKEGYNVGTLPESPTKLFEMLDRATDYQIM 478 Query: 181 -NSPNLNVVYRMNVREYQALTPY--ANMLEENWGKPPGHLNSDG-ENLLVYGKQYGNIFI 348 N P V R +Y L Y +EE W PG + G E + + G + GNI+I Sbjct: 479 QNKPEAIKVSR---EKYNELATYHERERIEERWQAFPGEIAPVGSEEVFLGGLRLGNIYI 535 Query: 349 GVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFKADAVLHFGTHGSLEFMPGKQV 528 GVQP G +GDPMRL+F K+ +PHH + ++Y ++ + F A A++H G HGS+E+MPG Q Sbjct: 536 GVQPRLGVQGDPMRLIFDKANTPHHQYISFYRWISREFDAHALVHVGMHGSVEWMPGLQT 595 Query: 529 GMSDACFPDSLI 564 G++ C+PD+L+ Sbjct: 596 GLTGECWPDALL 607
>Y908_METJA (Q58318) Hypothetical protein MJ0908| Length = 1232 Score = 119 bits (298), Expect = 6e-27 Identities = 66/195 (33%), Positives = 112/195 (57%), Gaps = 13/195 (6%) Frame = +1 Query: 10 SFPPDKGNVGTAAYLNVFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIH----DKEAQ 177 ++PP + +A L+ S+ ++L+++KK G+ V+ +P+ ELI+++++ DK Sbjct: 380 NYPPRNDKIASAFGLDSPESVVNILKEMKKRGFIVDEIPKNGTELIKKMLNYATNDKRFL 439 Query: 178 FNSPNLNVVYRMNVREYQALTPYANMLEE--------NWGKPPGH-LNSDGENLLVYGKQ 330 V ++ +Y+ + N L E NWG PG +N DGE L++ G Sbjct: 440 TEEMIKKAVGKVKKEDYEK---WFNSLSEKVKQELIKNWGAIPGDVMNFDGE-LIIPGII 495 Query: 331 YGNIFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFKADAVLHFGTHGSLEF 510 GN+FI VQP G+ +P + S P H + A+Y +++ +FKADA++H G HG+LE+ Sbjct: 496 NGNVFISVQPPRGFGENPSAIYHSPDLPPTHYYIAFYKWIKDVFKADAIMHIGKHGNLEW 555 Query: 511 MPGKQVGMSDACFPD 555 +PGK VG+S+ C+PD Sbjct: 556 LPGKCVGLSNECYPD 570
>Y1441_METJA (Q58836) Hypothetical protein MJ1441| Length = 1226 Score = 109 bits (272), Expect = 6e-24 Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 29/209 (13%) Frame = +1 Query: 25 KGNVGTAAYLNVFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIHDKE-AQFNSPNLNV 201 + VG+AA+L+ F S+ ++++ LK++GY VE +PE EEL + ++ K ++F +N Sbjct: 351 EATVGSAAHLDSFQSVINIMKKLKEEGYYVENIPENGEELAQLIMQKKAISEFRWTTVNE 410 Query: 202 V-------YRMNVREYQALTPYANMLEEN--------WGK------PPGHLNS-DGEN-L 312 + Y M+ EY Y N L EN WG P G + +G+N + Sbjct: 411 IIAKGGYLYLMDEEEYYE---YFNTLPENVKNKILETWGDLNGKDIPAGMIYKVNGKNKI 467 Query: 313 LVYGKQYGNIFIGVQPTFGY-----EGDPMRLLFSKSASPHHGFAAYYTFVEKIFKADAV 477 ++ G ++GN+++ VQP G +G ++L P H + A Y + I AD + Sbjct: 468 VITGLKFGNVYVCVQPKRGCAGARCDGRVCKILHDPYCPPTHQYIASYKYFNDI--ADII 525 Query: 478 LHFGTHGSLEFMPGKQVGMSDACFPDSLI 564 +H GTHG+LEF+PGK VG+S+ C+PD I Sbjct: 526 IHVGTHGTLEFLPGKNVGLSNECYPDICI 554
>COBN_PSEDE (P29929) Aerobic cobaltochelatase cobN subunit (EC 6.6.1.2)| (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobN subunit) Length = 1275 Score = 90.5 bits (223), Expect = 3e-18 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 12/196 (6%) Frame = +1 Query: 10 SFPPDKGNVGTAAYLNVFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIHDKEAQFNSP 189 ++P G +G L+ + VL + ++GY V +P + LI ++ P Sbjct: 394 NYPNRDGRLGNGVGLDTPAGTVEVLSAMAREGYAVGEVPADGDALIRFLMA-------GP 446 Query: 190 NLNVVYRMNVREYQALTPYANMLEE-----------NWGKPPGH-LNSDGENLLVYGKQY 333 + +RE +L Y + WG P DG L + + Sbjct: 447 TNAASHDREIRERISLNDYKTFFDSLPKQIKDEVAGRWGVPEADPFFLDGAFALPLAR-F 505 Query: 334 GNIFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFVEKIFKADAVLHFGTHGSLEFM 513 G + +G+QP GY DP S P HG+ A+Y F+ + F A A++H G HG+LE++ Sbjct: 506 GEVIVGIQPARGYNIDPKESYHSPDLVPPHGYLAFYAFLRQQFGAQAIVHMGKHGNLEWL 565 Query: 514 PGKQVGMSDACFPDSL 561 PGK + +S+ C+P+++ Sbjct: 566 PGKALALSETCYPEAI 581
>SYH_METJA (Q58406) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 416 Score = 31.2 bits (69), Expect = 2.1 Identities = 30/109 (27%), Positives = 44/109 (40%) Frame = +1 Query: 58 VFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIHDKEAQFNSPNLNVVYRMNVREYQAL 237 V + +L+D K + L EE++E VIHDK Y +N+ + L Sbjct: 223 VLDELKEILKDFPKSMEAINNL----EEILEFVIHDK------------YTINLGIARGL 266 Query: 238 TPYANMLEENWGKPPGHLNSDGENLLVYGKQYGNIFIGVQPTFGYEGDP 384 Y M+ E +GK G + G +Y N+ TFG E P Sbjct: 267 DYYTGMVFEIYGK-------KGAKQICGGGRYDNLI----ETFGGEPTP 304
>Y1834_THETN (Q8R8Z8) UPF0042 protein TTE1834| Length = 284 Score = 30.8 bits (68), Expect = 2.8 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Frame = +1 Query: 61 FSSIYSVLRDLKKDGYNVE--GLPETPEELIEEVIHDKEAQFNSPNLNVVYRMNV--REY 228 F IYS L LKK+ Y+ E L + E LI+ + S +V +N + Sbjct: 65 FEDIYSSLDFLKKNNYDYEIVFLEASDEVLIKRFKETRRRHPLSEEGRIVDGINEERKRL 124 Query: 229 QALTPYANMLEENWGKPPGHLNSDGENLLVYGKQYGNIFIGVQPTFGYE 375 + AN + + L + N+ + GK++ I I V +FGY+ Sbjct: 125 SDIRKIANYIIDTSNLTSSQLKEELSNIFLKGKKFKGIIIDVM-SFGYK 172
>SYV_MESFL (Q6F1B1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 873 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +1 Query: 142 LIEEVIHDKEAQFNSPNLNVVYRM--NVREYQALTPYANMLEENWGKPPGHL 291 ++EE DKE F + +NVV + ++RE++A N + NW G+L Sbjct: 707 ILEESWFDKEFVFETDYINVVIELINSIREFRATNNIKNNVLLNWNATNGNL 758
>Y1520_METJA (Q58915) Hypothetical protein MJ1520| Length = 387 Score = 30.0 bits (66), Expect = 4.7 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = +1 Query: 286 HLNSDGENLLVYGKQYGNIFIGVQPTFGYE---GDPMRLLFSKSASPHHGFAAYYTFVEK 456 +LN D ENL +Y K++ + TFG E G +R LF K G +EK Sbjct: 297 YLNEDIENLELYDKRW-------KETFGSEIKNGLRVRKLFLKL-----GNDTLDKIIEK 344 Query: 457 IFKADAVLHFGTHGSLE 507 + K+D + + HG ++ Sbjct: 345 LSKSDLIDYINKHGDMD 361
>ZP3R_CAVPO (O08569) Zona pellucida 3 receptor precursor (Acrosomal matrix| component 67) (Protein AM67) (p67) Length = 533 Score = 30.0 bits (66), Expect = 4.7 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Frame = -1 Query: 447 KSIVCCKPVVRTGRL*EEKPHWITFIAKSGLHSDEDVAILLP---IDKEVLTIRVEMPR- 280 +S VC KP + G+L EK H+ T +H D ++ P I E T E+P+ Sbjct: 407 ESAVCLKPDILNGKLSVEKDHY-TETENVTIHCDSGYEVVGPQNIICSENRTWTPEIPKC 465 Query: 279 -WLAPVLLQHVGVGG---ECLVLP 220 W P + V G ECL P Sbjct: 466 EWEVPEECKQVAAGRKLLECLPNP 489
>YE87_SCHPO (O14303) Hypothetical protein C9G1.07 in chromosome I| Length = 418 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/68 (23%), Positives = 33/68 (48%) Frame = +1 Query: 16 PPDKGNVGTAAYLNVFSSIYSVLRDLKKDGYNVEGLPETPEELIEEVIHDKEAQFNSPNL 195 PP + ++ + Y+ + ++ + R L + GYN + L E + I ++ + +N Sbjct: 76 PPKRISLASKDYIGITATSETNFRQLIRLGYNEKSLGELKQGTISRLLKEHMTLWNQERS 135 Query: 196 NVVYRMNV 219 NV + NV Sbjct: 136 NVNRKSNV 143
>IDH_ANASP (P50214) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 473 Score = 30.0 bits (66), Expect = 4.7 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 7/86 (8%) Frame = +1 Query: 190 NLNVVYRMNVREYQALTP---YANMLEENWGKPPGHLNSDGENLLVYGKQYGNIFIGVQP 360 +LNV R Y + P YA G P H N + +++VY + +I++G++ Sbjct: 113 SLNVALRQIFDLYACVRPCRYYA-------GTPSPHKNPEKLDVIVYRENTEDIYLGIEW 165 Query: 361 TFGYE-GDPMRLLFSKS---ASPHHG 426 G E GD + + +K A+P HG Sbjct: 166 KQGSEIGDRLISILNKELIPATPEHG 191
>NAMA_LISIN (Q928C2) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)| Length = 338 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Frame = +1 Query: 127 ETPEELIEEVIHD--------KEAQFNSPNLNVVYRMNVREYQALTPYANMLEENWGKPP 282 E +E I+EV+ D KEA F+ ++ + + ++ L+P +N E+N+G P Sbjct: 132 ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQF--LSPISNRREDNYGGPA 189 Query: 283 GH 288 G+ Sbjct: 190 GN 191
>NAMA_LISMO (Q8Y4H1) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)| Length = 338 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Frame = +1 Query: 127 ETPEELIEEVIHD--------KEAQFNSPNLNVVYRMNVREYQALTPYANMLEENWGKPP 282 E +E I+EV+ D KEA F+ ++ + + ++ L+P N E+N+G P Sbjct: 132 ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQF--LSPITNRREDNYGGPA 189 Query: 283 GH 288 G+ Sbjct: 190 GN 191
>NAMA_LISMF (Q71WV6) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)| Length = 338 Score = 29.3 bits (64), Expect = 8.0 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Frame = +1 Query: 127 ETPEELIEEVIHD--------KEAQFNSPNLNVVYRMNVREYQALTPYANMLEENWGKPP 282 E +E I+EV+ D KEA F+ ++ + + ++ L+P N E+N+G P Sbjct: 132 ELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQF--LSPITNRREDNYGGPA 189 Query: 283 GH 288 G+ Sbjct: 190 GN 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,946,660 Number of Sequences: 219361 Number of extensions: 2078578 Number of successful extensions: 5980 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5970 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
