| Clone Name | basd27m09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1481 Score = 85.7 bits (43), Expect = 7e-14 Identities = 70/79 (88%) Strand = Plus / Plus Query: 1 gtccgcccgctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgcc 60 |||||||||||||| ||||||| |||||| |||||| ||||||| ||| |||||| || Sbjct: 698 gtccgcccgctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctcc 757 Query: 61 accgtcctcgacctcccct 79 ||||||||||||||||||| Sbjct: 758 accgtcctcgacctcccct 776 Score = 73.8 bits (37), Expect = 3e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 247 gccatgacgcacagcttcatcagagcggtggagtgcgagccgcgc 291 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 941 gccatgacgcacagcttcatcaaggcggtggagtgcgagccgcgc 985
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 7e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 1 gtccgcccgctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgcc 60 |||||||||||||| ||||||| |||||| |||||| ||||||| ||| |||||| || Sbjct: 15369838 gtccgcccgctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctcc 15369779 Query: 61 accgtcctcgacctcccct 79 ||||||||||||||||||| Sbjct: 15369778 accgtcctcgacctcccct 15369760 Score = 73.8 bits (37), Expect = 3e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 247 gccatgacgcacagcttcatcagagcggtggagtgcgagccgcgc 291 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 15369512 gccatgacgcacagcttcatcaaggcggtggagtgcgagccgcgc 15369468 Score = 71.9 bits (36), Expect = 1e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 19 ggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccc 78 ||||| ||||||||||||||| |||| |||||||||||| |||| | |||||||||||| Sbjct: 15409757 ggcgtgaagctgcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccc 15409698 Query: 79 tacc 82 |||| Sbjct: 15409697 tacc 15409694 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 239 cgatcggcgccatgacgcacagcttcatcagagcggtggagt 280 ||||||| || |||||| ||||||||||||| |||||||||| Sbjct: 15401998 cgatcggggcgatgacgtacagcttcatcagggcggtggagt 15401957 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 247 gccatgacgcacagcttcatcagagcggtggag 279 ||||||||| |||||||||||| ||||||||| Sbjct: 15423436 gccatgacgtacagcttcatcaaggcggtggag 15423404
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 85.7 bits (43), Expect = 7e-14 Identities = 70/79 (88%) Strand = Plus / Plus Query: 1 gtccgcccgctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgcc 60 |||||||||||||| ||||||| |||||| |||||| ||||||| ||| |||||| || Sbjct: 131688 gtccgcccgctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctcc 131747 Query: 61 accgtcctcgacctcccct 79 ||||||||||||||||||| Sbjct: 131748 accgtcctcgacctcccct 131766 Score = 73.8 bits (37), Expect = 3e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 247 gccatgacgcacagcttcatcagagcggtggagtgcgagccgcgc 291 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 132014 gccatgacgcacagcttcatcaaggcggtggagtgcgagccgcgc 132058 Score = 71.9 bits (36), Expect = 1e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 19 ggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccc 78 ||||| ||||||||||||||| |||| |||||||||||| |||| | |||||||||||| Sbjct: 91769 ggcgtgaagctgcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccc 91828 Query: 79 tacc 82 |||| Sbjct: 91829 tacc 91832 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 239 cgatcggcgccatgacgcacagcttcatcagagcggtggagt 280 ||||||| || |||||| ||||||||||||| |||||||||| Sbjct: 99528 cgatcggggcgatgacgtacagcttcatcagggcggtggagt 99569 Score = 46.1 bits (23), Expect = 0.062 Identities = 47/55 (85%) Strand = Plus / Plus Query: 25 aagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 79 ||||| ||||||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 99221 aagctccacgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 99275 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Plus Query: 247 gccatgacgcacagcttcatcagagcggtggag 279 ||||||||| |||||||||||| ||||||||| Sbjct: 78090 gccatgacgtacagcttcatcaaggcggtggag 78122
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 7e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 1 gtccgcccgctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgcc 60 |||||||||||||| ||||||| |||||| |||||| ||||||| ||| |||||| || Sbjct: 15364372 gtccgcccgctcgtccacggcgccaagctccacgccgtcgtcgacgccgagcacagctcc 15364313 Query: 61 accgtcctcgacctcccct 79 ||||||||||||||||||| Sbjct: 15364312 accgtcctcgacctcccct 15364294 Score = 73.8 bits (37), Expect = 3e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 247 gccatgacgcacagcttcatcagagcggtggagtgcgagccgcgc 291 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 15364046 gccatgacgcacagcttcatcaaggcggtggagtgcgagccgcgc 15364002 Score = 71.9 bits (36), Expect = 1e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 19 ggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccc 78 ||||| ||||||||||||||| |||| |||||||||||| |||| | |||||||||||| Sbjct: 15404291 ggcgtgaagctgcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccc 15404232 Query: 79 tacc 82 |||| Sbjct: 15404231 tacc 15404228 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 239 cgatcggcgccatgacgcacagcttcatcagagcggtggagt 280 ||||||| || |||||| ||||||||||||| |||||||||| Sbjct: 15396532 cgatcggggcgatgacgtacagcttcatcagggcggtggagt 15396491 Score = 46.1 bits (23), Expect = 0.062 Identities = 47/55 (85%) Strand = Plus / Minus Query: 25 aagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 79 ||||| ||||||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 15396839 aagctccacgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 15396785 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 247 gccatgacgcacagcttcatcagagcggtggag 279 ||||||||| |||||||||||| ||||||||| Sbjct: 15417970 gccatgacgtacagcttcatcaaggcggtggag 15417938
>ref|XM_470786.1| Oryza sativa (japonica cultivar-group), mRNA Length = 857 Score = 73.8 bits (37), Expect = 3e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 247 gccatgacgcacagcttcatcagagcggtggagtgcgagccgcgc 291 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 284 gccatgacgcacagcttcatcaaggcggtggagtgcgagccgcgc 328
>ref|XM_470794.1| Oryza sativa (japonica cultivar-group), mRNA Length = 909 Score = 71.9 bits (36), Expect = 1e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 19 ggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccc 78 ||||| ||||||||||||||| |||| |||||||||||| |||| | |||||||||||| Sbjct: 418 ggcgtgaagctgcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccc 477 Query: 79 tacc 82 |||| Sbjct: 478 tacc 481
>dbj|AK063170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G09, full insert sequence Length = 1347 Score = 71.9 bits (36), Expect = 1e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 19 ggcgtcaagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccc 78 ||||| ||||||||||||||| |||| |||||||||||| |||| | |||||||||||| Sbjct: 452 ggcgtgaagctgcacgccatcatcgacacctgccacagcggcaccatgctcgacctcccc 511 Query: 79 tacc 82 |||| Sbjct: 512 tacc 515
>gb|AY107563.1| Zea mays PCO093543 mRNA sequence Length = 995 Score = 69.9 bits (35), Expect = 4e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 1 gtccgcccgctcgtgcacggcgtcaagctgcacgccatcgtcgatgcctgccacagcgcc 60 ||||| ||||| |||| ||||| |||||| |||||| ||||||| || |||||||||| Sbjct: 243 gtccggccgctggtgcccggcgccaagctccacgccgtcgtcgacgcgtgccacagcgat 302 Query: 61 accgtcctcgacctcccct 79 |||||||||||||||||| Sbjct: 303 tccgtcctcgacctcccct 321 Score = 63.9 bits (32), Expect = 3e-07 Identities = 119/148 (80%) Strand = Plus / Plus Query: 140 cgggcgcctgcaagggcaccagcggaggccaggccgtgctcatcagtggcagcagcaacg 199 |||||| |||||||||||| ||||| |||||||| ||||| ||||| ||| |||| ||| Sbjct: 379 cgggcgtctgcaagggcacgagcggcggccaggcggtgcttatcagcggctacagcgacg 438 Query: 200 ggaagagcaacatgagcgtgctgcctgagccctacgccacgatcggcgccatgacgcaca 259 | || ||||| | ||| || ||| ||| ||| ||| || | || |||||||| |||| Sbjct: 439 gcaaaagcaagttcagcatgacgccggaggcctgcgcggcggtgggggccatgacccaca 498 Query: 260 gcttcatcagagcggtggagtgcgagcc 287 ||||||||| |||||||| |||||||| Sbjct: 499 gcttcatcaaggcggtggaatgcgagcc 526
>ref|XM_470792.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1203 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 239 cgatcggcgccatgacgcacagcttcatcagagcggtggagt 280 ||||||| || |||||| ||||||||||||| |||||||||| Sbjct: 956 cgatcggggcgatgacgtacagcttcatcagggcggtggagt 997 Score = 46.1 bits (23), Expect = 0.062 Identities = 47/55 (85%) Strand = Plus / Plus Query: 25 aagctgcacgccatcgtcgatgcctgccacagcgccaccgtcctcgacctcccct 79 ||||| ||||||||||| || | |||||||||| |||| |||| |||||||||| Sbjct: 727 aagctccacgccatcgtggacacgtgccacagcggcaccatcctggacctcccct 781
>ref|XM_877373.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor (Alpha-2-M), transcript variant 6 (LOC513856), mRNA Length = 4896 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gccaggccgtgctcatcagtgg 188 |||||||||||||||||||||| Sbjct: 1512 gccaggccgtgctcatcagtgg 1491
>ref|XM_877327.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor (Alpha-2-M), transcript variant 5 (LOC513856), mRNA Length = 4848 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gccaggccgtgctcatcagtgg 188 |||||||||||||||||||||| Sbjct: 1512 gccaggccgtgctcatcagtgg 1491
>ref|XM_877276.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor (Alpha-2-M), transcript variant 4 (LOC513856), mRNA Length = 4923 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gccaggccgtgctcatcagtgg 188 |||||||||||||||||||||| Sbjct: 1512 gccaggccgtgctcatcagtgg 1491
>ref|XM_877233.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor (Alpha-2-M), transcript variant 3 (LOC513856), mRNA Length = 2803 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gccaggccgtgctcatcagtgg 188 |||||||||||||||||||||| Sbjct: 1512 gccaggccgtgctcatcagtgg 1491
>ref|XM_865861.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor (Alpha-2-M), transcript variant 2 (LOC513856), mRNA Length = 4911 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gccaggccgtgctcatcagtgg 188 |||||||||||||||||||||| Sbjct: 1512 gccaggccgtgctcatcagtgg 1491
>ref|XM_591612.2| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor (Alpha-2-M), transcript variant 1 (LOC513856), mRNA Length = 5019 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 gccaggccgtgctcatcagtgg 188 |||||||||||||||||||||| Sbjct: 1512 gccaggccgtgctcatcagtgg 1491
>ref|XM_470796.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Plus Query: 247 gccatgacgcacagcttcatcagagcggtggag 279 ||||||||| |||||||||||| ||||||||| Sbjct: 883 gccatgacgtacagcttcatcaaggcggtggag 915
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 ggaggtggagggatgagcgcc 133 ||||||||||||||||||||| Sbjct: 75813 ggaggtggagggatgagcgcc 75833
>ref|XM_573691.1| PREDICTED: Rattus norvegicus similar to myozenin 1 (LOC498440), mRNA Length = 1394 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 149 gcaagggcaccagcggaggccaggc 173 ||||||||| ||||||||||||||| Sbjct: 560 gcaagggcagcagcggaggccaggc 584
>ref|NM_190381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2376 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgcacgccatcgtcgatgc 47 |||||||||||||||||||| Sbjct: 1738 ctgcacgccatcgtcgatgc 1719
>ref|XM_988711.1| PREDICTED: Mus musculus zinc finger protein 167 (Zfp167), mRNA Length = 2400 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gaggccaggccgtgctcatc 183 |||||||||||||||||||| Sbjct: 713 gaggccaggccgtgctcatc 694
>gb|AC125374.4| Mus musculus BAC clone RP23-438P19 from chromosome 9, complete sequence Length = 175440 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gaggccaggccgtgctcatc 183 |||||||||||||||||||| Sbjct: 64334 gaggccaggccgtgctcatc 64353
>gb|AE005847.1| Caulobacter crescentus CB15 section 173 of 359 of the complete genome Length = 10886 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 24 caagctgcacgccatcgtcgatgc 47 ||||||||||| |||||||||||| Sbjct: 6056 caagctgcacgacatcgtcgatgc 6033
>gb|BC042569.1| Mus musculus zinc finger protein 167, mRNA (cDNA clone IMAGE:3994925), with apparent retained intron Length = 3973 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gaggccaggccgtgctcatc 183 |||||||||||||||||||| Sbjct: 1367 gaggccaggccgtgctcatc 1348
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgcacgccatcgtcgatgc 47 |||||||||||||||||||| Sbjct: 35155167 ctgcacgccatcgtcgatgc 35155148
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgcacgccatcgtcgatgc 47 |||||||||||||||||||| Sbjct: 34251 ctgcacgccatcgtcgatgc 34232
>ref|XM_220206.3| PREDICTED: Rattus norvegicus kringle containing transmembrane protein 2 (predicted) (Kremen2_predicted), mRNA Length = 1284 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggcagcagcaacgggaagag 206 |||||||||||||||||||| Sbjct: 53 ggcagcagcaacgggaagag 34
>emb|AL160471.5|CNS01RH4 Human chromosome 14 DNA sequence BAC R-304L20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 193559 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ctggaggtggagggatgagc 130 |||||||||||||||||||| Sbjct: 177719 ctggaggtggagggatgagc 177738
>gb|AC165888.18| Mus musculus chromosome 3, clone RP24-352B14, complete sequence Length = 181505 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gtgctcatcagtggcagcag 194 |||||||||||||||||||| Sbjct: 116162 gtgctcatcagtggcagcag 116143
>emb|AL805958.8| Mouse DNA sequence from clone RP23-179F9 on chromosome 2, complete sequence Length = 198627 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gcaccgtgtccaagcagacc 105 |||||||||||||||||||| Sbjct: 55078 gcaccgtgtccaagcagacc 55097 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,994,793 Number of Sequences: 3902068 Number of extensions: 1994793 Number of successful extensions: 36719 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36606 Number of HSP's gapped (non-prelim): 113 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)