>APK1B_ARATH (P46573) Protein kinase APK1B, chloroplast precursor (EC 2.7.11.1)|
          Length = 412

 Score = 66.2 bits (160), Expect(2) = 8e-17
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +3

Query: 369 RSEGEILESANVKAFTFNELRTATRNFRPDSVLGEGGFWVSLQG 500
           R+EGEIL+S N+K+FTF EL+ ATRNFRPDSVLGEGGF    +G
Sbjct: 43  RTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKG 86



 Score = 39.7 bits (91), Expect(2) = 8e-17
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 478 GFGSVFKGWIDEKTLAPTKP 537
           GFGSVFKGWIDE+TL  +KP
Sbjct: 79  GFGSVFKGWIDEQTLTASKP 98

>NAK_ARATH (P43293) Probable serine/threonine-protein kinase NAK (EC 2.7.11.1)|
          Length = 389

 Score = 62.8 bits (151), Expect(2) = 5e-16
 Identities = 28/44 (63%), Positives = 38/44 (86%)
 Frame = +3

Query: 369 RSEGEILESANVKAFTFNELRTATRNFRPDSVLGEGGFWVSLQG 500
           R+EGEIL++AN+K F+ +EL++ATRNFRPDSV+GEGGF    +G
Sbjct: 42  RTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKG 85



 Score = 40.4 bits (93), Expect(2) = 5e-16
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 478 GFGSVFKGWIDEKTLAPTKP 537
           GFG VFKGWIDE +LAP+KP
Sbjct: 78  GFGCVFKGWIDESSLAPSKP 97

>APK1A_ARATH (Q06548) Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1)|
          Length = 410

 Score = 65.5 bits (158), Expect(2) = 1e-15
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = +3

Query: 369 RSEGEILESANVKAFTFNELRTATRNFRPDSVLGEGGFWVSLQG 500
           R+EGEIL+S N+K+F+F EL++ATRNFRPDSVLGEGGF    +G
Sbjct: 42  RTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKG 85



 Score = 36.6 bits (83), Expect(2) = 1e-15
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 478 GFGSVFKGWIDEKTLAPTKP 537
           GFG VFKGWIDEK+L  ++P
Sbjct: 78  GFGCVFKGWIDEKSLTASRP 97

>CX32_ARATH (P27450) Probable serine/threonine-protein kinase Cx32, chloroplast|
           precursor (EC 2.7.11.1)
          Length = 419

 Score = 52.8 bits (125), Expect(2) = 7e-11
 Identities = 21/35 (60%), Positives = 31/35 (88%)
 Frame = +3

Query: 378 GEILESANVKAFTFNELRTATRNFRPDSVLGEGGF 482
           G++LES N+K + F +L+TAT+NF+PDS+LG+GGF
Sbjct: 63  GKLLESPNLKVYNFLDLKTATKNFKPDSMLGQGGF 97



 Score = 33.1 bits (74), Expect(2) = 7e-11
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 478 GFGSVFKGWIDEKTLAPTK 534
           GFG V++GW+D  TLAP++
Sbjct: 96  GFGKVYRGWVDATTLAPSR 114

>RLCK7_ARATH (Q9LQQ8) Probable serine/threonine-protein kinase RLCKVII (EC|
           2.7.11.1)
          Length = 423

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +3

Query: 405 KAFTFNELRTATRNFRPDSVLGEGGFWVSLQG 500
           + FTF EL  AT NFR D  LGEGGF    +G
Sbjct: 89  QTFTFQELAEATGNFRSDCFLGEGGFGKVFKG 120

>PBS1_ARATH (Q9FE20) Serine/threonine-protein kinase PBS1 (EC 2.7.11.1)|
           (AvrPphB susceptible protein 1)
          Length = 456

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 411 FTFNELRTATRNFRPDSVLGEGGF 482
           F F EL  AT NF PD+ LGEGGF
Sbjct: 74  FAFRELAAATMNFHPDTFLGEGGF 97

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 29.6 bits (65), Expect(2) = 0.21
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 402 VKAFTFNELRTATRNFRPDSVLGEGGF 482
           +K F+  EL+ A+ NF   ++LG GGF
Sbjct: 274 LKRFSLRELQVASDNFSNKNILGRGGF 300



 Score = 23.5 bits (49), Expect(2) = 0.21
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 472 REGFGSVFKGWIDEKTLAPTK 534
           R GFG V+KG + + TL   K
Sbjct: 297 RGGFGKVYKGRLADGTLVAVK 317

>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 381 EILESANVKAFTFNELRTATRNFRPDSVLGEGGFWVSLQG 500
           +++E+ N+   +   LR+ T NF  D++LG GGF V  +G
Sbjct: 567 QMVEAGNM-LISIQVLRSVTNNFSSDNILGSGGFGVVYKG 605

>CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa collectin)|
          Length = 321

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/33 (57%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -1

Query: 214 GRAGSSGPQIEP----PPGMEQPAGR*ENPSNR 128
           GR G  GPQ E     PPGM  PAGR E PS R
Sbjct: 52  GRDGKEGPQGEKGDPGPPGMPGPAGR-EGPSGR 83

>TRUA_PYRHO (O58941) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 262

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 375 EGEILESANVKAFTFNELRTATRNFRPDSVLG 470
           EGEI+++ N     FNEL++A+R  +  S LG
Sbjct: 27  EGEIIKALNNSGIMFNELKSASRTDKGVSALG 58

>REPS2_MOUSE (Q80XA6) RalBP1-associated Eps domain-containing protein 2|
           (RalBP1-interacting protein 2) (Partner of RalBP1)
          Length = 521

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 232 AVPHGQGRAGSSGPQIEPPPGMEQPAGR*ENPSNRSIGRTEPRR 101
           ++ HG  +  S   Q+ P P   QP G+ E PS+   G    RR
Sbjct: 67  SLSHGYSKLRSGTEQMHPAPYERQPIGQPEGPSSEGPGAKPFRR 110

>DPY7_CAEEL (P34688) Cuticle collagen dpy-7 precursor (Protein dumpy-7)|
          Length = 318

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -1

Query: 241 GAPAVPHGQGRAGSSGPQIEP----PPGMEQPAGR*ENPSNRSIGRT 113
           G P  P   GR G +GPQ EP     PG++ P      P + SIG T
Sbjct: 171 GLPGRPGKPGRVGDAGPQGEPGEQGEPGIKGP------PGDDSIGGT 211

>DRS1_CRYNE (Q5KIK3) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 808

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 204 DRAGLKSSRRRGWSSRPVGERTQAIDRSAGRNHGGLRSRP 85
           ++AG    +++G + R  G +  A D    ++H G+R++P
Sbjct: 750 EKAGKGKDKKKGKARRVTGGKGSAFDSEGKKSHEGMRAKP 789

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 241 GAPAVPHGQGRAGSSGPQIEPPPGMEQPAG 152
           G P +P   G+ G +GPQ   PPG   PAG
Sbjct: 599 GGPGLPGPAGKNGETGPQ--GPPGPTGPAG 626

>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 484  QNPPSPSTLSGRKFLVAVLSSLKVKALTFADSRISPSLRCTDTXXXXXXXXLKASPVPAS 305
            ++PPSPS L+  K    VLS L+ +A T  D +        +T         K  P+P +
Sbjct: 1319 ESPPSPSDLA--KLESTVLSILEAQASTLTDEKSVKRKELYETYSEQTKDQHKTKPLPVT 1376

>PANX2_MOUSE (Q6IMP4) Pannexin-2|
          Length = 607

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 247 DLGAPAVPHGQGRAGSSGPQIEPPPGMEQ 161
           D GA A  H +G  G SGP   PP   E+
Sbjct: 469 DAGARAAHHYKGSGGDSGPSSAPPAASEK 497

>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -1

Query: 241  GAPAVPHGQGRAGSSGPQIEPP----PGMEQPAG 152
            GAP  P  +G AG SGPQ  P     PG + P G
Sbjct: 1317 GAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPRG 1350

>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 244  LGAPAVPHGQGRAGSSGPQIEP-PPGMEQPAG 152
            LG P V    G AG  GP  EP PPG   P G
Sbjct: 1193 LGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPG 1224

>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1774

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 241  GAPAVPHGQGRAGSSGPQIEP-PPGMEQPAG 152
            G P VP  +G  G  GP   P PPG E P G
Sbjct: 956  GLPGVPGKEGPPGFPGPPGPPGPPGKEGPPG 986

>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -1

Query: 241  GAPAVPHGQGRAGSSGPQIEPPPGMEQPAGR 149
            GAP  P G GRAG  G +  P PG   P GR
Sbjct: 1083 GAP--PPGAGRAGPPGGRGMPAPGGAAPRGR 1111

>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 241 GAPAVPHGQGRAGSSGPQIEP-PPGMEQPAG 152
           G P +P   G  G  GP+  P PPG++ P G
Sbjct: 211 GGPGLPGQPGAKGDRGPKGPPGPPGLQGPKG 241

>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -1

Query: 241 GAPAVPHGQGRAGSSGPQIEP----PPGMEQPAGR 149
           G P +P   G  G  GP+ +P    PPG + P GR
Sbjct: 774 GLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGR 808

>SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 369

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
 Frame = -1

Query: 235 PAVPHG----QGRAGSSGPQIEP----PPGMEQPAGR*ENPSNR 128
           PA P G     G AG  GP+ +     PPGM  PAGR E PS +
Sbjct: 80  PAGPIGLKGDNGSAGEPGPKGDTGPPGPPGMPGPAGR-EGPSGK 122

>FCN3_HUMAN (O75636) Ficolin-3 precursor (Collagen/fibrinogen domain-containing|
           protein 3) (Collagen/fibrinogen domain-containing lectin
           3 p35) (Hakata antigen)
          Length = 299

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 235 PAVPHGQGRAGSSGPQIEP-PPGMEQPAGR*ENPSN 131
           P  P   G  G+ GPQ  P PPG   P G   +P N
Sbjct: 47  PGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGDPVN 82

>CL46_BOVIN (Q8MHZ9) Collectin-46 precursor (CL-46) (46 kDa collectin)|
          Length = 371

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -1

Query: 235 PAVPHGQ-GRAGSSGPQIEP----PPGMEQPAGR*ENPSNR 128
           P  P G  G AG  GP+ +     PPGM  PAGR E PS +
Sbjct: 83  PIGPKGDNGSAGEPGPKGDTGPPGPPGMPGPAGR-EGPSGK 122

>APX7_ORYSA (Q7XJ02) Probable L-ascorbate peroxidase 7, chloroplast precursor|
           (EC 1.11.1.11)
          Length = 359

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = -1

Query: 319 PVPASIPGICPXXXXXXXXXXXGTDLGAPAVPHGQGRAGSSGPQIEPPPGMEQPAG 152
           P+    P I               + G P +P   GR   +GP+  PP G    AG
Sbjct: 163 PIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAG 218

>IRAK4_MOUSE (Q8R4K2) Interleukin-1 receptor-associated kinase 4 (EC 2.7.11.1)|
           (IRAK-4)
          Length = 459

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
 Frame = +3

Query: 387 LESANVK--AFTFNELRTATRNF--RPDSV----LGEGGFWVSLQG 500
           +ES++ +  +F+F+EL++ T NF  +P S     +GEGGF V  +G
Sbjct: 158 VESSDTRFHSFSFHELKSITNNFDEQPASAGGNRMGEGGFGVVYKG 203

>COL2_CAEEL (P17656) Cuticle collagen 2 precursor|
          Length = 301

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
 Frame = -1

Query: 241 GAPAVPHGQGRAGSS--GPQIEP----PPGMEQPAGR*ENPSNRSIGRTEPR 104
           GAP  P G G  G+S  G   EP    PPG   PAG    P     G   P+
Sbjct: 198 GAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPK 249

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -1

Query: 247 DLGAPAVPHGQGRAGSSG----PQIEPPPGMEQPAG 152
           D GAP  P G+G AG+ G    P +   PG+   AG
Sbjct: 664 DAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAG 699

>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor|
          Length = 743

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 241 GAPAVPHGQGRAGSSGPQIEP-PPGMEQPAG 152
           G P +P   G  G  GP+  P PPG++ P G
Sbjct: 211 GGPGLPGQPGAKGERGPKGPPGPPGLQGPKG 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,148,091
Number of Sequences: 219361
Number of extensions: 1124850
Number of successful extensions: 4071
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4033
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)