ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27l07 |
|---|---|
| Clone Library Name | barley_pub |
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/89 (23%), Positives = 37/89 (41%) Frame = +1 Query: 1 IRHEGNAFRQMVCGFDLLRCDGRSYVCDVNGWSFVKNSYKYYDDAACIMRKIFLDAKAPH 180 +RH + F + + L DG++YVCD+N + Y R +A P Sbjct: 103 LRHTSDYFEVLYLAAEKLIADGKAYVCDLN-----SQQVREY-------RGTLTEAGRPS 150 Query: 181 LSSTIPPTLPWKSKAPDQSTEGLTRQGSG 267 PW+ ++PD++ E + +G Sbjct: 151 ---------PWRERSPDENLELFRQMRAG 170
>ATC9_SCHPO (O74431) Probable cation-transporting ATPase C1672.11c (EC 3.6.3.-)| Length = 1315 Score = 31.2 bits (69), Expect = 2.3 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +1 Query: 163 DAKAPHLSSTIPPTL--PWKSKAPDQSTEGLTRQGSGIIGTFGQSEELRCVIVVIRHG 330 DA IPPT+ PW S + + + L GI+ TF +LR + V+++HG Sbjct: 717 DAAYVRTQQLIPPTVSPPWNSPSNNYTESDLEL---GIVRTFEFVSQLRRMAVIVKHG 771
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/89 (23%), Positives = 37/89 (41%) Frame = +1 Query: 1 IRHEGNAFRQMVCGFDLLRCDGRSYVCDVNGWSFVKNSYKYYDDAACIMRKIFLDAKAPH 180 +RH + F + + L DG++YVCD+N + Y R +A P Sbjct: 103 LRHTSDYFEVLYLAAEKLITDGKAYVCDLN-----SEQVREY-------RGTLTEAGRPS 150 Query: 181 LSSTIPPTLPWKSKAPDQSTEGLTRQGSG 267 PW+ ++PD++ E + +G Sbjct: 151 ---------PWRERSPDENLELFRQMRAG 170
>KRHB2_MOUSE (Q99M74) Keratin, type II cuticular Hb2 (Hair keratin, type II Hb2)| Length = 516 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = +2 Query: 197 LQPFLGNLKHQISLLKALHDKEVGLLVHSVSQ 292 L+ L L+H+I LKAL ++E+GLL +S+ Sbjct: 237 LETNLEALEHEIEFLKALFEEEIGLLQSQISE 268
>DPEP2_MOUSE (Q8C255) Dipeptidase 2 precursor (EC 3.4.13.19) (Membrane-bound| dipeptidase 2) (MBD-2) Length = 478 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3 Query: 273 WYIRSVRRTTLRHCCDTPW*SDTKAEGETESYRGKT 380 +Y+ VR TL H C+TPW ++T ++G Y T Sbjct: 205 FYLLGVRYLTLTHTCNTPW-AETSSKGVHAFYSSVT 239
>YHE1_YEAST (P38730) Hypothetical 17.6 kDa protein in CBP2 5'region| Length = 149 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = +2 Query: 122 IMTMLHASCEKYFLMQKLLIFHQPFLQPFLGNLKHQISLLKALHDKEVGLLVH 280 I+TM S L Q +L+FH P NL +++ +KE+ L+H Sbjct: 75 IVTMFEVSSVLEKLPQNILLFHYPLPSKMGNNLLMSFLTQRSIDEKEIDALLH 127
>LYTS_STAES (Q8CR79) Sensor protein lytS (EC 2.7.13.3) (Autolysin sensor| kinase) Length = 591 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 442 AVQLQDLLDATRQLVPPTRSGQESDSDAEDLEHIEKLRQVKAV 570 AVQ D+L + +P RSG S + E I KL QV AV Sbjct: 217 AVQTHDVLQLANETLPYFRSGLNEKSAQQAAEIILKLMQVSAV 259
>LYTS_STAEQ (Q5HLG3) Sensor protein lytS (EC 2.7.13.3) (Autolysin sensor| kinase) Length = 591 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 442 AVQLQDLLDATRQLVPPTRSGQESDSDAEDLEHIEKLRQVKAV 570 AVQ D+L + +P RSG S + E I KL QV AV Sbjct: 217 AVQTHDVLQLANETLPYFRSGLNEKSAQQAAEIILKLMQVSAV 259
>DPEP2_HUMAN (Q9H4A9) Dipeptidase 2 precursor (EC 3.4.13.19)| Length = 486 Score = 29.6 bits (65), Expect = 6.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 273 WYIRSVRRTTLRHCCDTPW*SDTKAEGETESY 368 +Y+ VR TL H C+TPW +++ A+G Y Sbjct: 203 FYMLGVRYLTLTHTCNTPW-AESSAKGVHSFY 233
>RPOB_BUCAI (P57146) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/61 (27%), Positives = 37/61 (60%) Frame = +1 Query: 394 LKYNGGKPRAETKLKSAVQLQDLLDATRQLVPPTRSGQESDSDAEDLEHIEKLRQVKAVL 573 +K+N R ETK S + +D++D ++++ R+G+ + +D++H+ R+V++V Sbjct: 403 MKFNRSLLREETKGSSTLNKEDIIDVIKKII-DIRNGK---GEVDDIDHLGN-RRVRSVG 457 Query: 574 E 576 E Sbjct: 458 E 458
>SF04_ARATH (Q94C11) Splicing factor 4-like protein (SF4-like protein)| Length = 443 Score = 29.6 bits (65), Expect = 6.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 460 LLDATRQLVPPTRSGQESDSDAEDLEHIEKLRQVK 564 L ++ L PP + G E D D ED++H + VK Sbjct: 76 LKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVK 110
>PPAP_RAT (P20646) Prostatic acid phosphatase precursor (EC 3.1.3.2)| Length = 381 Score = 29.6 bits (65), Expect = 6.6 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +1 Query: 283 GQSEELRCVIVVIRHGDRTP 342 GQ++EL+ V +V RHGDR P Sbjct: 29 GQAKELKFVTLVFRHGDRGP 48
>PDUW_SALTY (P74879) Probable propionate kinase (EC 2.7.2.15)| Length = 404 Score = 29.3 bits (64), Expect = 8.6 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = +1 Query: 196 PPTLPW----KSKAPDQSTEGLTRQGSGIIGTFGQSEELRCVIVVIRHGDRTPK 345 P LPW +SK P Q + L + SG++G G S + R V G+R K Sbjct: 246 PSILPWIAQRESKTPQQLNQLLNNE-SGLLGVSGVSSDYRDVEQAANTGNRQAK 298 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,781,498 Number of Sequences: 219361 Number of extensions: 1451653 Number of successful extensions: 3978 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3976 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
