ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27l04 |
|---|---|
| Clone Library Name | barley_pub |
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 50.8 bits (120), Expect = 1e-06 Identities = 26/42 (61%), Positives = 27/42 (64%) Frame = +3 Query: 3 DPAYPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 DPAYPGGP+FNPLGFG IKNGRLAMLA L Sbjct: 197 DPAYPGGPLFNPLGFG-KDEKSMKELKLKEIKNGRLAMLAIL 237
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 40.4 bits (93), Expect = 0.001 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = +3 Query: 3 DPAYPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 D YPGG F+PLG+G+ IKNGRLAMLA + Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 40.4 bits (93), Expect = 0.001 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = +3 Query: 3 DPAYPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 D YPGG F+PLG+G+ IKNGRLAMLA + Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 32.7 bits (73), Expect = 0.29 Identities = 20/39 (51%), Positives = 21/39 (53%) Frame = +3 Query: 12 YPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 YPGG IFNPL F + NGRLAMLAFL Sbjct: 185 YPGG-IFNPLNFAPTQEAKEKE-----LANGRLAMLAFL 217
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 31.6 bits (70), Expect = 0.64 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +3 Query: 12 YPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 YPGG F+PLG IK+ RLAM+AFL Sbjct: 217 YPGGKFFDPLGL-AADPEKTAQLQLAEIKHARLAMVAFL 254
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 30.4 bits (67), Expect = 1.4 Identities = 19/42 (45%), Positives = 21/42 (50%) Frame = +3 Query: 3 DPAYPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 D YPGGP F+PLG IKNGRLAM + L Sbjct: 174 DTLYPGGP-FDPLGLADDPDTFAELKVKE-IKNGRLAMFSCL 213
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 30.0 bits (66), Expect = 1.9 Identities = 19/42 (45%), Positives = 21/42 (50%) Frame = +3 Query: 3 DPAYPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 D +PGGP F+PLG IKNGRLAM A L Sbjct: 198 DKLHPGGP-FDPLGLAKDPEQGALLKVKE-IKNGRLAMFAML 237
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 30.0 bits (66), Expect = 1.9 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 12 YPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 YPGG F+PLG + IK+ RLAM+ FL Sbjct: 214 YPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFL 251
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 29.6 bits (65), Expect = 2.4 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +3 Query: 12 YPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLA 122 YPGG F+PLG IKNGRLAM + Sbjct: 188 YPGGQYFDPLGL-ADDPTTFAELKVKEIKNGRLAMFS 223
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 29.3 bits (64), Expect = 3.2 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +3 Query: 12 YPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLA 122 YPGG F+PLG IKNGRLAM + Sbjct: 191 YPGGQYFDPLGL-ADDPVTFAELKVKEIKNGRLAMFS 226
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 28.9 bits (63), Expect = 4.1 Identities = 19/42 (45%), Positives = 20/42 (47%) Frame = +3 Query: 3 DPAYPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 DP YPG F+PLG IKNGRLAM A L Sbjct: 195 DPLYPG-EAFDPLGLADDPDTFAELKVKE-IKNGRLAMFACL 234
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 28.1 bits (61), Expect = 7.1 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 12 YPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAFL 128 YPGG F+PLG+ + IKNGRLA+LA + Sbjct: 168 YPGGA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLAIV 204
>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29| Length = 279 Score = 27.7 bits (60), Expect = 9.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 12 YPGGPIFNPLGFGTXXXXXXXXXXXXXIKNGRLAMLAF 125 YPGG +F+PL + IK+ RLAM++F Sbjct: 212 YPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSF 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.119 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,498,406 Number of Sequences: 219361 Number of extensions: 117806 Number of successful extensions: 288 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 282 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 286 length of database: 80,573,946 effective HSP length: 18 effective length of database: 76,625,448 effective search space used: 1839010752 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
